Wall clock time and date at job start Tue Mar 31 2020 23:09:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.40565 * 120.13491 * 2 1 4 4 C 1.34854 * 120.34369 * 179.97438 * 3 2 1 5 5 N 1.36678 * 120.64024 * 359.97438 * 4 3 2 6 6 C 1.36193 * 132.29508 * 180.36208 * 5 4 3 7 7 C 1.36575 * 107.09413 * 180.11082 * 6 5 4 8 8 C 1.47586 * 125.91939 * 179.84409 * 7 6 5 9 9 O 1.21595 * 120.00161 * 359.70953 * 8 7 6 10 10 N 1.34772 * 120.00197 * 179.71391 * 8 7 6 11 11 C 1.46502 * 120.00569 * 179.97438 * 10 8 7 12 12 C 1.50694 * 109.47861 * 179.97438 * 11 10 8 13 13 C 1.29457 * 117.69284 * 94.99351 * 12 11 10 14 14 C 1.50319 * 123.65117 * 180.57773 * 13 12 11 15 15 N 1.47010 * 109.16396 * 349.28755 * 14 13 12 16 16 C 1.36939 * 121.37262 * 222.96294 * 15 14 13 17 17 H 1.08006 * 119.99321 * 155.96770 * 16 15 14 18 18 C 1.38810 * 120.00352 * 335.97266 * 16 15 14 19 19 N 1.31617 * 119.99875 * 344.52484 * 18 16 15 20 20 Si 1.86807 * 119.99988 * 164.52017 * 18 16 15 21 21 H 1.48495 * 109.46984 * 60.00138 * 20 18 16 22 22 H 1.48500 * 109.46904 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.47058 * 299.99897 * 20 18 16 24 24 C 1.47338 * 117.25069 * 42.95114 * 15 14 13 25 25 C 1.49964 * 117.69058 * 275.22495 * 12 11 10 26 26 N 1.34580 * 108.16362 * 359.57205 * 7 6 5 27 27 C 1.32235 * 109.02258 * 0.27213 * 26 7 6 28 28 C 1.35893 * 120.13539 * 179.97438 * 2 1 3 29 29 H 1.09001 * 109.46946 * 90.00150 * 1 2 3 30 30 H 1.09001 * 109.46957 * 209.99766 * 1 2 3 31 31 H 1.08996 * 109.47016 * 329.99841 * 1 2 3 32 32 H 1.08005 * 119.82791 * 359.95978 * 3 2 1 33 33 H 1.08000 * 119.68009 * 179.97438 * 4 3 2 34 34 H 1.07993 * 126.45382 * 359.94206 * 6 5 4 35 35 H 0.96998 * 120.00142 * 359.97438 * 10 8 7 36 36 H 1.09006 * 109.46917 * 59.99057 * 11 10 8 37 37 H 1.09004 * 109.46730 * 300.00357 * 11 10 8 38 38 H 1.08003 * 118.17487 * 0.86945 * 13 12 11 39 39 H 1.09004 * 109.52258 * 109.19397 * 14 13 12 40 40 H 1.08999 * 109.52598 * 229.38084 * 14 13 12 41 41 H 0.97002 * 119.99820 * 180.02562 * 19 18 16 42 42 H 1.09002 * 109.78070 * 57.80258 * 24 15 14 43 43 H 1.09002 * 109.77840 * 178.61854 * 24 15 14 44 44 H 1.08995 * 109.43781 * 40.81758 * 25 12 11 45 45 H 1.09004 * 109.12988 * 281.42366 * 25 12 11 46 46 H 1.08001 * 120.32966 * 0.06330 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2127 1.2157 0.0000 4 6 3.5612 1.2206 0.0005 5 7 4.2621 0.0472 0.0016 6 6 5.5969 -0.2231 0.0086 7 6 5.7314 -1.5822 0.0034 8 6 7.0060 -2.3262 0.0047 9 8 8.0619 -1.7232 0.0056 10 7 6.9997 -3.6739 0.0049 11 6 8.2649 -4.4125 0.0056 12 6 7.9826 -5.8927 0.0063 13 6 7.9683 -6.5030 -1.1353 14 6 7.6893 -7.9718 -1.2913 15 7 7.7013 -8.6086 0.0337 16 6 8.3174 -9.8141 0.2397 17 1 8.6591 -10.0839 1.2281 18 6 8.5029 -10.6892 -0.8217 19 7 7.8352 -10.5151 -1.9425 20 14 9.7004 -12.1138 -0.6595 21 1 9.2756 -12.9924 0.4597 22 1 9.7159 -12.8936 -1.9232 23 1 11.0618 -11.5874 -0.3864 24 6 7.0234 -7.8962 1.1308 25 6 7.7329 -6.5540 1.3289 26 7 4.5001 -2.1256 0.0029 27 6 3.6011 -1.1559 0.0017 28 6 2.1893 -1.1753 0.0005 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8899 0.5138 32 1 1.6721 2.1507 -0.0007 33 1 4.0926 2.1608 0.0001 34 1 6.3982 0.5009 0.0143 35 1 6.1574 -4.1549 0.0045 36 1 8.8373 -4.1516 0.8959 37 1 8.8382 -4.1519 -0.8841 38 1 8.1726 -5.9255 -2.0249 39 1 6.7115 -8.1099 -1.7529 40 1 8.4568 -8.4237 -1.9196 41 1 7.9645 -11.1269 -2.6841 42 1 5.9787 -7.7262 0.8703 43 1 7.0851 -8.4846 2.0463 44 1 7.1119 -5.9057 1.9470 45 1 8.6862 -6.7206 1.8306 46 1 1.6569 -2.1149 -0.0001 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001000915263.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:09:35 Heat of formation + Delta-G solvation = 70.840574 kcal Electronic energy + Delta-G solvation = -27901.678922 eV Core-core repulsion = 23985.557117 eV Total energy + Delta-G solvation = -3916.121805 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.91778 -40.76151 -39.37225 -38.52707 -36.44923 -35.29918 -34.50751 -32.69209 -31.81569 -31.43453 -30.89397 -28.85515 -27.91048 -26.23018 -24.80800 -24.34015 -23.69040 -22.75885 -22.73287 -21.28014 -19.54650 -19.24391 -18.34644 -17.67254 -17.31598 -17.19931 -17.03311 -16.78276 -16.14248 -16.04285 -15.69933 -15.54082 -15.38070 -15.24366 -15.00320 -14.77680 -14.48792 -14.23215 -13.95410 -13.64606 -13.40034 -13.28569 -12.96903 -12.93982 -12.77795 -12.67551 -12.58707 -12.51734 -12.26440 -12.12665 -11.72277 -11.62492 -11.59312 -11.34193 -11.20143 -10.68440 -10.24470 -9.87790 -9.68348 -8.89185 -8.76150 -7.88177 -5.29979 -0.35977 0.15434 0.95955 1.12070 1.47013 1.47706 1.50210 1.56578 2.25153 2.36121 2.51397 2.51825 2.97602 3.28496 3.44733 3.60236 3.69909 3.78199 3.85009 3.94985 4.09628 4.13599 4.26093 4.41841 4.44380 4.50971 4.62412 4.69051 4.71470 4.80496 4.82481 4.88369 4.89466 5.01041 5.08084 5.18532 5.19466 5.28440 5.28934 5.38082 5.41764 5.46029 5.55112 5.60660 5.74126 5.93413 6.14177 6.33380 6.36178 6.64909 7.07192 7.12719 7.82320 8.37276 9.20512 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.020023 B = 0.002006 C = 0.001886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.033983 B =13956.718374 C =14845.233029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.048 4.048 3 C -0.127 4.127 4 C 0.048 3.952 5 N -0.369 5.369 6 C -0.014 4.014 7 C -0.025 4.025 8 C 0.598 3.402 9 O -0.571 6.571 10 N -0.699 5.699 11 C 0.166 3.834 12 C -0.141 4.141 13 C -0.142 4.142 14 C 0.206 3.794 15 N -0.614 5.614 16 C -0.258 4.258 17 H 0.071 0.929 18 C -0.056 4.056 19 N -0.940 5.940 20 Si 0.971 3.029 21 H -0.274 1.274 22 H -0.294 1.294 23 H -0.280 1.280 24 C 0.139 3.861 25 C -0.084 4.084 26 N -0.504 5.504 27 C 0.219 3.781 28 C -0.117 4.117 29 H 0.088 0.912 30 H 0.074 0.926 31 H 0.094 0.906 32 H 0.195 0.805 33 H 0.203 0.797 34 H 0.216 0.784 35 H 0.412 0.588 36 H 0.076 0.924 37 H 0.068 0.932 38 H 0.112 0.888 39 H 0.013 0.987 40 H 0.060 0.940 41 H 0.250 0.750 42 H 0.023 0.977 43 H 0.062 0.938 44 H 0.083 0.917 45 H 0.068 0.932 46 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.246 29.927 4.643 33.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.054 4.054 3 C -0.147 4.147 4 C -0.072 4.072 5 N -0.040 5.040 6 C -0.150 4.150 7 C -0.156 4.156 8 C 0.385 3.615 9 O -0.451 6.451 10 N -0.349 5.349 11 C 0.044 3.956 12 C -0.142 4.142 13 C -0.162 4.162 14 C 0.081 3.919 15 N -0.338 5.338 16 C -0.388 4.388 17 H 0.089 0.911 18 C -0.251 4.251 19 N -0.587 5.587 20 Si 0.799 3.201 21 H -0.200 1.200 22 H -0.220 1.220 23 H -0.206 1.206 24 C 0.014 3.986 25 C -0.122 4.122 26 N -0.226 5.226 27 C -0.027 4.027 28 C -0.138 4.138 29 H 0.106 0.894 30 H 0.093 0.907 31 H 0.113 0.887 32 H 0.212 0.788 33 H 0.220 0.780 34 H 0.233 0.767 35 H 0.248 0.752 36 H 0.094 0.906 37 H 0.087 0.913 38 H 0.130 0.870 39 H 0.030 0.970 40 H 0.078 0.922 41 H 0.059 0.941 42 H 0.042 0.958 43 H 0.080 0.920 44 H 0.101 0.899 45 H 0.086 0.914 46 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -14.549 29.383 4.528 33.099 hybrid contribution 0.645 -0.804 -0.393 1.103 sum -13.904 28.578 4.135 32.049 Atomic orbital electron populations 1.20903 0.87298 1.04738 1.04003 1.20244 0.98696 0.91505 0.94990 1.21347 0.91764 1.00506 1.01100 1.22485 0.93884 0.88586 1.02215 1.42934 1.06670 1.08626 1.45794 1.22827 0.84624 0.97203 1.10358 1.20506 0.92075 0.92172 1.10889 1.17145 0.86516 0.82055 0.75801 1.90758 1.32140 1.69319 1.52844 1.45912 1.10600 1.05454 1.72906 1.20355 0.85204 0.87609 1.02449 1.20605 1.04205 0.93755 0.95596 1.22978 0.97970 0.97487 0.97758 1.19399 0.98023 0.87164 0.87335 1.44401 1.63114 1.20373 1.05945 1.19494 1.30132 0.93486 0.95672 0.91089 1.25787 1.01479 1.00559 0.97253 1.70172 1.43027 1.39938 1.05541 0.85282 0.79190 0.79008 0.76620 1.19989 1.22027 1.20589 1.21125 0.93792 0.92327 0.91369 1.20685 1.00982 0.96501 0.94069 1.70753 0.98355 1.30429 1.23095 1.21346 0.95294 0.80478 1.05583 1.20382 0.86888 1.01324 1.05165 0.89367 0.90705 0.88716 0.78820 0.77971 0.76695 0.75170 0.90603 0.91341 0.86984 0.96965 0.92224 0.94091 0.95844 0.91990 0.89901 0.91407 0.82819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.36 10.02 71.24 0.71 0.35 16 2 C -0.05 -0.44 5.88 -19.84 -0.12 -0.56 16 3 C -0.13 -0.69 9.67 22.06 0.21 -0.47 16 4 C 0.05 0.41 10.93 83.16 0.91 1.32 16 5 N -0.37 -6.76 2.93 -351.25 -1.03 -7.79 16 6 C -0.01 -0.31 11.47 83.63 0.96 0.65 16 7 C -0.02 -0.71 6.94 40.80 0.28 -0.42 16 8 C 0.60 19.12 7.82 86.71 0.68 19.80 16 9 O -0.57 -20.42 16.87 -4.01 -0.07 -20.49 16 10 N -0.70 -21.59 5.55 -469.94 -2.61 -24.20 16 11 C 0.17 5.24 5.66 85.63 0.48 5.72 16 12 C -0.14 -5.03 5.23 -15.14 -0.08 -5.11 16 13 C -0.14 -5.70 9.47 27.10 0.26 -5.45 16 14 C 0.21 10.42 5.23 85.42 0.45 10.87 16 15 N -0.61 -32.00 3.01 -703.36 -2.12 -34.11 16 16 C -0.26 -14.55 9.71 84.03 0.82 -13.73 16 17 H 0.07 3.86 7.88 -2.91 -0.02 3.84 16 18 C -0.06 -3.20 5.01 84.86 0.43 -2.78 16 19 N -0.94 -56.72 11.08 21.65 0.24 -56.48 16 20 Si 0.97 45.92 29.58 68.60 2.03 47.94 16 21 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 22 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 23 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 24 C 0.14 5.92 6.58 86.25 0.57 6.49 16 25 C -0.08 -2.95 5.94 29.65 0.18 -2.78 16 26 N -0.50 -14.69 11.01 -183.49 -2.02 -16.71 16 27 C 0.22 5.08 7.80 134.21 1.05 6.12 16 28 C -0.12 -1.93 9.75 22.45 0.22 -1.71 16 29 H 0.09 0.18 8.14 -2.39 -0.02 0.16 16 30 H 0.07 0.28 8.08 -2.39 -0.02 0.26 16 31 H 0.09 -0.06 8.09 -2.39 -0.02 -0.08 16 32 H 0.19 -0.57 8.06 -2.91 -0.02 -0.59 16 33 H 0.20 0.15 8.06 -2.91 -0.02 0.13 16 34 H 0.22 3.49 8.06 -2.91 -0.02 3.46 16 35 H 0.41 12.69 8.16 -92.71 -0.76 11.93 16 36 H 0.08 2.32 8.11 -2.38 -0.02 2.30 16 37 H 0.07 2.18 7.78 -2.39 -0.02 2.16 16 38 H 0.11 4.08 7.73 -2.91 -0.02 4.05 16 39 H 0.01 0.69 8.14 -2.38 -0.02 0.67 16 40 H 0.06 3.38 6.41 -2.39 -0.02 3.36 16 41 H 0.25 14.63 8.31 -92.71 -0.77 13.86 16 42 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 43 H 0.06 2.53 7.96 -2.39 -0.02 2.52 16 44 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 45 H 0.07 2.40 8.14 -2.38 -0.02 2.38 16 46 H 0.15 2.32 8.06 -2.91 -0.02 2.29 16 Total: -1.00 -77.22 385.91 2.67 -74.54 By element: Atomic # 1 Polarization: 18.72 SS G_CDS: 0.25 Total: 18.97 kcal Atomic # 6 Polarization: 10.32 SS G_CDS: 8.00 Total: 18.32 kcal Atomic # 7 Polarization: -131.76 SS G_CDS: -7.53 Total: -139.29 kcal Atomic # 8 Polarization: -20.42 SS G_CDS: -0.07 Total: -20.49 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 2.03 Total: 47.94 kcal Total: -77.22 2.67 -74.54 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000915263.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.384 kcal (2) G-P(sol) polarization free energy of solvation -77.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.543 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds