Wall clock time and date at job start Tue Mar 31 2020 23:57:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30183 * 125.08562 * 2 1 4 4 C 1.34895 * 109.73139 * 180.02562 * 3 2 1 5 5 C 1.46289 * 126.49593 * 180.02562 * 4 3 2 6 6 O 1.21773 * 119.99815 * 179.97438 * 5 4 3 7 7 N 1.34769 * 119.99884 * 359.97290 * 5 4 3 8 8 C 1.46504 * 119.99787 * 179.97438 * 7 5 4 9 9 C 1.50706 * 109.47049 * 179.97438 * 8 7 5 10 10 C 1.29457 * 117.68943 * 94.99857 * 9 8 7 11 11 C 1.50329 * 123.64803 * 180.85391 * 10 9 8 12 12 N 1.47003 * 109.16647 * 349.03109 * 11 10 9 13 13 C 1.36935 * 121.37669 * 222.96737 * 12 11 10 14 14 H 1.07999 * 120.00103 * 155.97640 * 13 12 11 15 15 C 1.38811 * 119.99867 * 335.97841 * 13 12 11 16 16 N 1.31617 * 120.00023 * 344.49340 * 15 13 12 17 17 Si 1.86798 * 120.00430 * 164.49725 * 15 13 12 18 18 H 1.48503 * 109.47305 * 94.45014 * 17 15 13 19 19 H 1.48497 * 109.47253 * 214.45466 * 17 15 13 20 20 H 1.48508 * 109.46922 * 334.45177 * 17 15 13 21 21 C 1.47342 * 117.25218 * 42.94040 * 12 11 10 22 22 C 1.49965 * 117.69800 * 274.74385 * 9 8 7 23 23 C 1.40144 * 107.00423 * 359.97438 * 4 3 2 24 24 C 1.40183 * 133.57517 * 180.02562 * 23 4 3 25 25 C 1.36339 * 119.19630 * 180.24016 * 24 23 4 26 26 C 1.40392 * 119.55935 * 359.46161 * 25 24 23 27 27 C 1.35026 * 120.44240 * 0.55316 * 26 25 24 28 28 N 1.36245 * 125.09269 * 180.02562 * 2 1 3 29 29 H 1.09000 * 109.47064 * 90.02533 * 1 2 3 30 30 H 1.09000 * 109.47432 * 210.02157 * 1 2 3 31 31 H 1.08999 * 109.47430 * 330.02405 * 1 2 3 32 32 H 0.96999 * 120.00625 * 0.02562 * 7 5 4 33 33 H 1.08998 * 109.47177 * 300.00076 * 8 7 5 34 34 H 1.09000 * 109.46958 * 59.99993 * 8 7 5 35 35 H 1.07993 * 118.17839 * 0.88968 * 10 9 8 36 36 H 1.09002 * 109.51638 * 108.93169 * 11 10 9 37 37 H 1.08995 * 109.52175 * 229.12450 * 11 10 9 38 38 H 0.96998 * 120.00515 * 180.02562 * 16 15 13 39 39 H 1.09006 * 109.77794 * 57.81377 * 21 12 11 40 40 H 1.08997 * 109.77828 * 178.61716 * 21 12 11 41 41 H 1.09003 * 109.31012 * 281.29009 * 22 9 8 42 42 H 1.09002 * 109.31216 * 40.71100 * 22 9 8 43 43 H 1.07994 * 120.40189 * 359.96451 * 24 23 4 44 44 H 1.07998 * 120.21786 * 179.69936 * 25 24 23 45 45 H 1.08001 * 119.77712 * 180.26964 * 26 25 24 46 46 H 1.07997 * 119.70278 * 179.73450 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2552 1.0653 0.0000 4 6 3.5561 0.7081 -0.0006 5 6 4.7065 1.6118 -0.0002 6 8 5.8367 1.1585 -0.0004 7 7 4.5154 2.9458 0.0002 8 6 5.6675 3.8508 0.0011 9 6 5.1849 5.2785 0.0008 10 6 5.0860 5.8803 1.1427 11 6 4.6023 7.2950 1.2995 12 7 4.5283 7.9294 -0.0246 13 6 4.9691 9.2099 -0.2273 14 1 5.2720 9.5268 -1.2143 15 6 5.0265 10.1006 0.8358 16 7 4.3864 9.8326 1.9542 17 14 6.0123 11.6796 0.6793 18 1 5.1154 12.7825 0.2498 19 1 6.6182 12.0171 1.9923 20 1 7.0869 11.4943 -0.3288 21 6 3.9609 7.1302 -1.1248 22 6 4.8586 5.9037 -1.3227 23 6 3.5964 -0.6928 -0.0003 24 6 4.6394 -1.6294 -0.0002 25 6 4.3390 -2.9593 -0.0050 26 6 2.9952 -3.3658 0.0016 27 6 2.0033 -2.4497 0.0013 28 7 2.2902 -1.1148 -0.0005 29 1 -0.3633 -0.0005 -1.0277 30 1 -0.3634 -0.8898 0.5142 31 1 -0.3634 0.8902 0.5134 32 1 3.6151 3.3069 0.0006 33 1 6.2702 3.6708 0.8913 34 1 6.2711 3.6715 -0.8887 35 1 5.3670 5.3360 2.0320 36 1 3.6135 7.2931 1.7582 37 1 5.2967 7.8495 1.9307 38 1 4.4262 10.4551 2.6970 39 1 2.9498 6.8144 -0.8678 40 1 3.9416 7.7230 -2.0393 41 1 5.7825 6.2045 -1.8168 42 1 4.3397 5.1762 -1.9469 43 1 5.6684 -1.3016 -0.0009 44 1 5.1295 -3.6951 -0.0099 45 1 2.7533 -4.4184 0.0022 46 1 0.9737 -2.7757 0.0020 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001000943669.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:57:01 Heat of formation + Delta-G solvation = 88.709219 kcal Electronic energy + Delta-G solvation = -28308.090556 eV Core-core repulsion = 24392.743594 eV Total energy + Delta-G solvation = -3915.346962 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.18777 -39.34872 -37.87878 -37.58953 -34.82632 -33.90394 -32.78549 -31.92814 -30.91426 -30.36795 -29.64472 -27.71291 -26.51133 -24.52159 -24.21697 -23.17604 -22.60136 -21.51491 -21.01116 -20.33757 -18.25334 -17.56781 -17.30318 -16.66904 -16.54386 -15.95388 -15.65035 -15.57343 -15.13100 -14.86606 -14.69924 -14.15470 -13.90625 -13.64060 -13.55856 -13.51605 -13.26067 -12.99077 -12.88173 -12.60678 -12.22351 -12.08120 -12.05592 -11.90180 -11.49841 -11.28751 -10.97450 -10.88189 -10.76233 -10.69083 -10.34671 -10.27614 -9.99618 -9.78158 -9.72935 -9.53298 -8.84393 -8.63723 -7.98949 -7.77578 -6.69974 -5.76051 -3.14426 0.28238 0.71921 2.08232 2.12019 2.70701 2.90171 3.40448 3.47468 3.50198 3.57554 3.62030 3.93256 4.04204 4.22812 4.37809 4.52751 4.53590 4.66379 4.96254 4.98763 5.12149 5.21248 5.26544 5.39489 5.41825 5.47101 5.47966 5.63572 5.66562 5.83634 5.91233 5.98452 6.09557 6.14591 6.16579 6.25381 6.41567 6.55427 6.65021 6.72174 6.80021 6.94203 7.23732 7.31669 7.34805 7.41173 7.77276 7.82181 7.88124 8.38840 8.41950 9.23354 9.86329 10.44791 11.34464 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.025271 B = 0.002080 C = 0.001993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.737747 B =13457.680086 C =14045.549364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.168 3.832 3 N -0.412 5.412 4 C -0.055 4.055 5 C 0.602 3.398 6 O -0.553 6.553 7 N -0.704 5.704 8 C 0.158 3.842 9 C -0.165 4.165 10 C -0.125 4.125 11 C 0.195 3.805 12 N -0.596 5.596 13 C -0.244 4.244 14 H 0.068 0.932 15 C -0.003 4.003 16 N -0.910 5.910 17 Si 0.904 3.096 18 H -0.288 1.288 19 H -0.290 1.290 20 H -0.279 1.279 21 C 0.144 3.856 22 C -0.090 4.090 23 C 0.073 3.927 24 C -0.066 4.066 25 C -0.118 4.118 26 C -0.131 4.131 27 C 0.048 3.952 28 N -0.363 5.363 29 H 0.082 0.918 30 H 0.073 0.927 31 H 0.097 0.903 32 H 0.409 0.591 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.094 0.906 36 H 0.041 0.959 37 H 0.093 0.907 38 H 0.253 0.747 39 H 0.024 0.976 40 H 0.056 0.944 41 H 0.064 0.936 42 H 0.053 0.947 43 H 0.160 0.840 44 H 0.142 0.858 45 H 0.151 0.849 46 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.986 -29.023 -3.516 30.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.089 4.089 3 N -0.127 5.127 4 C -0.190 4.190 5 C 0.389 3.611 6 O -0.432 6.432 7 N -0.354 5.354 8 C 0.036 3.964 9 C -0.166 4.166 10 C -0.145 4.145 11 C 0.070 3.930 12 N -0.319 5.319 13 C -0.373 4.373 14 H 0.086 0.914 15 C -0.200 4.200 16 N -0.555 5.555 17 Si 0.734 3.266 18 H -0.215 1.215 19 H -0.216 1.216 20 H -0.205 1.205 21 C 0.017 3.983 22 C -0.129 4.129 23 C -0.039 4.039 24 C -0.085 4.085 25 C -0.139 4.139 26 C -0.152 4.152 27 C -0.073 4.073 28 N -0.034 5.034 29 H 0.101 0.899 30 H 0.092 0.908 31 H 0.115 0.885 32 H 0.245 0.755 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.112 0.888 36 H 0.059 0.941 37 H 0.111 0.889 38 H 0.063 0.937 39 H 0.042 0.958 40 H 0.075 0.925 41 H 0.083 0.917 42 H 0.072 0.928 43 H 0.178 0.822 44 H 0.160 0.840 45 H 0.169 0.831 46 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -6.599 -28.304 -3.380 29.259 hybrid contribution 0.321 0.042 0.092 0.337 sum -6.278 -28.262 -3.288 29.137 Atomic orbital electron populations 1.20208 0.83781 1.04422 1.03817 1.23370 0.95735 0.78789 1.11018 1.70059 1.01424 1.27432 1.13809 1.20547 0.91598 0.89639 1.17202 1.16495 0.86306 0.81825 0.76494 1.90786 1.23203 1.76952 1.52258 1.45949 1.11191 1.04859 1.73408 1.20485 0.87311 0.86774 1.01856 1.20486 1.06200 0.93628 0.96246 1.23273 0.95623 0.99522 0.96112 1.19752 0.99158 0.85949 0.88175 1.44134 1.71264 1.11796 1.04685 1.19180 1.35935 0.86691 0.95512 0.91391 1.24987 0.99845 0.97781 0.97423 1.70011 1.43294 1.37214 1.05007 0.86246 0.80007 0.83366 0.76981 1.21544 1.21598 1.20489 1.20993 0.93673 0.91207 0.92391 1.20779 1.00536 0.97940 0.93620 1.19273 0.84017 0.94307 1.06320 1.20844 0.99218 0.91198 0.97252 1.21232 0.96608 0.95929 1.00156 1.20918 0.92329 0.99988 1.01978 1.21664 1.01554 0.80284 1.03823 1.42872 1.07913 1.06508 1.46078 0.89932 0.90810 0.88470 0.75516 0.91567 0.91501 0.88789 0.94108 0.88929 0.93654 0.95775 0.92507 0.91746 0.92849 0.82235 0.84044 0.83130 0.81527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.39 10.32 36.00 0.37 -0.02 16 2 C 0.17 1.80 7.94 -154.57 -1.23 0.57 16 3 N -0.41 -5.72 10.90 -6.74 -0.07 -5.79 16 4 C -0.06 -0.82 7.05 -82.57 -0.58 -1.40 16 5 C 0.60 9.91 7.77 -13.03 -0.10 9.81 16 6 O -0.55 -10.06 15.75 5.12 0.08 -9.98 16 7 N -0.70 -11.16 5.54 -62.91 -0.35 -11.51 16 8 C 0.16 2.60 5.66 -5.19 -0.03 2.57 16 9 C -0.16 -3.01 5.22 -100.99 -0.53 -3.54 16 10 C -0.12 -2.49 9.47 -35.78 -0.34 -2.82 16 11 C 0.19 4.72 5.23 -5.10 -0.03 4.70 16 12 N -0.60 -15.19 3.01 -173.56 -0.52 -15.71 16 13 C -0.24 -6.77 9.71 -15.06 -0.15 -6.92 16 14 H 0.07 1.85 7.88 -52.49 -0.41 1.43 16 15 C 0.00 -0.08 5.01 -17.43 -0.09 -0.16 16 16 N -0.91 -26.51 11.08 55.49 0.61 -25.90 16 17 Si 0.90 21.98 29.58 -169.99 -5.03 16.95 16 18 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 19 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 20 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 21 C 0.14 3.07 6.59 -3.44 -0.02 3.04 16 22 C -0.09 -1.65 5.95 -28.09 -0.17 -1.81 16 23 C 0.07 0.92 6.72 -83.99 -0.56 0.36 16 24 C -0.07 -0.68 9.73 -39.54 -0.38 -1.07 16 25 C -0.12 -0.81 10.08 -39.46 -0.40 -1.21 16 26 C -0.13 -0.69 9.98 -39.91 -0.40 -1.08 16 27 C 0.05 0.30 10.77 -16.60 -0.18 0.12 16 28 N -0.36 -3.66 2.94 -57.93 -0.17 -3.83 16 29 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 0.27 7.98 -51.93 -0.41 -0.15 16 31 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.41 6.35 8.17 -40.82 -0.33 6.01 16 33 H 0.07 1.10 7.78 -51.93 -0.40 0.70 16 34 H 0.07 1.10 8.11 -51.93 -0.42 0.68 16 35 H 0.09 1.70 7.73 -52.49 -0.41 1.30 16 36 H 0.04 1.06 8.14 -51.93 -0.42 0.63 16 37 H 0.09 2.49 6.41 -51.93 -0.33 2.16 16 38 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 39 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.06 1.17 7.96 -51.93 -0.41 0.76 16 41 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 42 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.16 1.74 7.17 -52.49 -0.38 1.36 16 44 H 0.14 0.59 8.06 -52.49 -0.42 0.17 16 45 H 0.15 0.27 8.06 -52.49 -0.42 -0.15 16 46 H 0.17 0.41 7.94 -52.49 -0.42 -0.01 16 LS Contribution 383.74 15.07 5.78 5.78 Total: -1.00 -34.30 383.74 -10.92 -45.22 By element: Atomic # 1 Polarization: 10.08 SS G_CDS: -6.45 Total: 3.63 kcal Atomic # 6 Polarization: 5.94 SS G_CDS: -4.81 Total: 1.13 kcal Atomic # 7 Polarization: -62.24 SS G_CDS: -0.50 Total: -62.74 kcal Atomic # 8 Polarization: -10.06 SS G_CDS: 0.08 Total: -9.98 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.03 Total: 16.95 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -34.30 -10.92 -45.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000943669.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.933 kcal (2) G-P(sol) polarization free energy of solvation -34.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.224 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds