Wall clock time and date at job start Tue Mar 31 2020 23:57:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30183 * 125.08562 * 2 1 4 4 C 1.34895 * 109.73139 * 180.02562 * 3 2 1 5 5 C 1.46289 * 126.49593 * 180.02562 * 4 3 2 6 6 O 1.21773 * 119.99815 * 179.97438 * 5 4 3 7 7 N 1.34769 * 119.99884 * 359.97290 * 5 4 3 8 8 C 1.46504 * 119.99787 * 179.97438 * 7 5 4 9 9 C 1.50706 * 109.47049 * 179.97438 * 8 7 5 10 10 C 1.29457 * 117.68943 * 94.99857 * 9 8 7 11 11 C 1.50329 * 123.64803 * 180.85391 * 10 9 8 12 12 N 1.47003 * 109.16647 * 349.03109 * 11 10 9 13 13 C 1.36935 * 121.37669 * 222.96737 * 12 11 10 14 14 H 1.07999 * 120.00103 * 155.97640 * 13 12 11 15 15 C 1.38811 * 119.99867 * 335.97841 * 13 12 11 16 16 N 1.31617 * 120.00023 * 344.49340 * 15 13 12 17 17 Si 1.86798 * 120.00430 * 164.49725 * 15 13 12 18 18 H 1.48503 * 109.47305 * 94.45014 * 17 15 13 19 19 H 1.48497 * 109.47253 * 214.45466 * 17 15 13 20 20 H 1.48508 * 109.46922 * 334.45177 * 17 15 13 21 21 C 1.47342 * 117.25218 * 42.94040 * 12 11 10 22 22 C 1.49965 * 117.69800 * 274.74385 * 9 8 7 23 23 C 1.40144 * 107.00423 * 359.97438 * 4 3 2 24 24 C 1.40183 * 133.57517 * 180.02562 * 23 4 3 25 25 C 1.36339 * 119.19630 * 180.24016 * 24 23 4 26 26 C 1.40392 * 119.55935 * 359.46161 * 25 24 23 27 27 C 1.35026 * 120.44240 * 0.55316 * 26 25 24 28 28 N 1.36245 * 125.09269 * 180.02562 * 2 1 3 29 29 H 1.09000 * 109.47064 * 90.02533 * 1 2 3 30 30 H 1.09000 * 109.47432 * 210.02157 * 1 2 3 31 31 H 1.08999 * 109.47430 * 330.02405 * 1 2 3 32 32 H 0.96999 * 120.00625 * 0.02562 * 7 5 4 33 33 H 1.08998 * 109.47177 * 300.00076 * 8 7 5 34 34 H 1.09000 * 109.46958 * 59.99993 * 8 7 5 35 35 H 1.07993 * 118.17839 * 0.88968 * 10 9 8 36 36 H 1.09002 * 109.51638 * 108.93169 * 11 10 9 37 37 H 1.08995 * 109.52175 * 229.12450 * 11 10 9 38 38 H 0.96998 * 120.00515 * 180.02562 * 16 15 13 39 39 H 1.09006 * 109.77794 * 57.81377 * 21 12 11 40 40 H 1.08997 * 109.77828 * 178.61716 * 21 12 11 41 41 H 1.09003 * 109.31012 * 281.29009 * 22 9 8 42 42 H 1.09002 * 109.31216 * 40.71100 * 22 9 8 43 43 H 1.07994 * 120.40189 * 359.96451 * 24 23 4 44 44 H 1.07998 * 120.21786 * 179.69936 * 25 24 23 45 45 H 1.08001 * 119.77712 * 180.26964 * 26 25 24 46 46 H 1.07997 * 119.70278 * 179.73450 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2552 1.0653 0.0000 4 6 3.5561 0.7081 -0.0006 5 6 4.7065 1.6118 -0.0002 6 8 5.8367 1.1585 -0.0004 7 7 4.5154 2.9458 0.0002 8 6 5.6675 3.8508 0.0011 9 6 5.1849 5.2785 0.0008 10 6 5.0860 5.8803 1.1427 11 6 4.6023 7.2950 1.2995 12 7 4.5283 7.9294 -0.0246 13 6 4.9691 9.2099 -0.2273 14 1 5.2720 9.5268 -1.2143 15 6 5.0265 10.1006 0.8358 16 7 4.3864 9.8326 1.9542 17 14 6.0123 11.6796 0.6793 18 1 5.1154 12.7825 0.2498 19 1 6.6182 12.0171 1.9923 20 1 7.0869 11.4943 -0.3288 21 6 3.9609 7.1302 -1.1248 22 6 4.8586 5.9037 -1.3227 23 6 3.5964 -0.6928 -0.0003 24 6 4.6394 -1.6294 -0.0002 25 6 4.3390 -2.9593 -0.0050 26 6 2.9952 -3.3658 0.0016 27 6 2.0033 -2.4497 0.0013 28 7 2.2902 -1.1148 -0.0005 29 1 -0.3633 -0.0005 -1.0277 30 1 -0.3634 -0.8898 0.5142 31 1 -0.3634 0.8902 0.5134 32 1 3.6151 3.3069 0.0006 33 1 6.2702 3.6708 0.8913 34 1 6.2711 3.6715 -0.8887 35 1 5.3670 5.3360 2.0320 36 1 3.6135 7.2931 1.7582 37 1 5.2967 7.8495 1.9307 38 1 4.4262 10.4551 2.6970 39 1 2.9498 6.8144 -0.8678 40 1 3.9416 7.7230 -2.0393 41 1 5.7825 6.2045 -1.8168 42 1 4.3397 5.1762 -1.9469 43 1 5.6684 -1.3016 -0.0009 44 1 5.1295 -3.6951 -0.0099 45 1 2.7533 -4.4184 0.0022 46 1 0.9737 -2.7757 0.0020 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001000943669.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:57:00 Heat of formation + Delta-G solvation = 67.598988 kcal Electronic energy + Delta-G solvation = -28309.005964 eV Core-core repulsion = 24392.743594 eV Total energy + Delta-G solvation = -3916.262370 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.93303 -40.60931 -39.29955 -38.50168 -36.40770 -34.68489 -34.46278 -32.65322 -32.55519 -31.46573 -31.02086 -28.98486 -27.71389 -26.03362 -24.89689 -24.55154 -24.09883 -22.76008 -22.19466 -21.44780 -19.56005 -19.12157 -18.09194 -17.62196 -17.34456 -17.20230 -16.95466 -16.80605 -16.44579 -16.09896 -15.85524 -15.50059 -15.30889 -15.24106 -14.86688 -14.51981 -14.40420 -14.02773 -13.95373 -13.64778 -13.45159 -13.28341 -13.09807 -12.96532 -12.80352 -12.68007 -12.61611 -12.58896 -12.24110 -12.11572 -11.72392 -11.70799 -11.65870 -11.33678 -11.16665 -10.69048 -10.41059 -10.14406 -9.68403 -8.76210 -8.51992 -7.88465 -5.30066 -0.38929 0.05901 1.13928 1.18706 1.44314 1.46573 1.48282 1.58368 2.24446 2.44226 2.51158 2.55327 3.20922 3.28464 3.42311 3.60079 3.67939 3.75754 3.83773 3.92413 3.94981 4.14233 4.16093 4.41475 4.50985 4.53231 4.61294 4.70478 4.71708 4.73333 4.81481 4.83617 4.89055 5.00231 5.07827 5.12187 5.18969 5.22793 5.28729 5.34134 5.40016 5.45488 5.53366 5.60759 5.74111 6.09525 6.13932 6.33254 6.40629 6.71063 7.12510 7.17950 7.82064 8.37136 9.20503 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.025271 B = 0.002080 C = 0.001993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.737747 B =13457.680086 C =14045.549364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.165 3.835 3 N -0.444 5.444 4 C -0.118 4.118 5 C 0.601 3.399 6 O -0.582 6.582 7 N -0.704 5.704 8 C 0.169 3.831 9 C -0.140 4.140 10 C -0.142 4.142 11 C 0.207 3.793 12 N -0.615 5.615 13 C -0.257 4.257 14 H 0.071 0.929 15 C -0.056 4.056 16 N -0.940 5.940 17 Si 0.970 3.030 18 H -0.285 1.285 19 H -0.293 1.293 20 H -0.271 1.271 21 C 0.140 3.860 22 C -0.083 4.083 23 C 0.075 3.925 24 C -0.119 4.119 25 C -0.080 4.080 26 C -0.131 4.131 27 C 0.051 3.949 28 N -0.364 5.364 29 H 0.096 0.904 30 H 0.106 0.894 31 H 0.091 0.909 32 H 0.410 0.590 33 H 0.064 0.936 34 H 0.071 0.929 35 H 0.111 0.889 36 H 0.013 0.987 37 H 0.059 0.941 38 H 0.250 0.750 39 H 0.025 0.975 40 H 0.062 0.938 41 H 0.067 0.933 42 H 0.081 0.919 43 H 0.141 0.859 44 H 0.173 0.827 45 H 0.199 0.801 46 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.222 -32.965 -4.687 34.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.093 4.093 3 N -0.160 5.160 4 C -0.250 4.250 5 C 0.390 3.610 6 O -0.464 6.464 7 N -0.353 5.353 8 C 0.046 3.954 9 C -0.140 4.140 10 C -0.163 4.163 11 C 0.082 3.918 12 N -0.339 5.339 13 C -0.387 4.387 14 H 0.089 0.911 15 C -0.251 4.251 16 N -0.587 5.587 17 Si 0.798 3.202 18 H -0.212 1.212 19 H -0.219 1.219 20 H -0.195 1.195 21 C 0.014 3.986 22 C -0.122 4.122 23 C -0.039 4.039 24 C -0.139 4.139 25 C -0.101 4.101 26 C -0.151 4.151 27 C -0.069 4.069 28 N -0.035 5.035 29 H 0.115 0.885 30 H 0.125 0.875 31 H 0.110 0.890 32 H 0.246 0.754 33 H 0.082 0.918 34 H 0.090 0.910 35 H 0.128 0.872 36 H 0.031 0.969 37 H 0.078 0.922 38 H 0.059 0.941 39 H 0.043 0.957 40 H 0.080 0.920 41 H 0.086 0.914 42 H 0.100 0.900 43 H 0.159 0.841 44 H 0.190 0.810 45 H 0.216 0.784 46 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -7.844 -32.246 -4.577 33.500 hybrid contribution 0.589 0.941 0.392 1.177 sum -7.255 -31.304 -4.185 32.406 Atomic orbital electron populations 1.20414 0.80595 1.05800 1.05135 1.24178 0.97216 0.78399 1.09546 1.69936 1.01424 1.29486 1.15118 1.20261 0.91503 0.90565 1.22653 1.16783 0.86737 0.81888 0.75595 1.90741 1.24428 1.77354 1.53877 1.45823 1.10803 1.04843 1.73851 1.20292 0.87568 0.85517 1.02039 1.20608 1.03517 0.94271 0.95639 1.22968 0.98092 0.97507 0.97690 1.19390 0.97124 0.87944 0.87362 1.44411 1.71777 1.11805 1.05863 1.19525 1.35658 0.87759 0.95715 0.91091 1.25783 1.01009 1.01056 0.97259 1.70176 1.44664 1.38250 1.05608 0.85211 0.78625 0.79560 0.76760 1.21152 1.21912 1.19532 1.21159 0.94158 0.91925 0.91321 1.20711 1.00293 0.97189 0.93982 1.19458 0.85752 0.93916 1.04794 1.20816 0.98142 0.92697 1.02208 1.21767 0.98783 0.94764 0.94824 1.21533 0.90948 1.02174 1.00415 1.22681 1.04324 0.78500 1.01443 1.43110 1.06711 1.07973 1.45691 0.88501 0.87503 0.89002 0.75388 0.91767 0.91030 0.87151 0.96893 0.92238 0.94094 0.95691 0.91966 0.91423 0.90046 0.84146 0.80968 0.78399 0.76994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.59 10.32 71.23 0.74 0.14 16 2 C 0.16 3.34 7.94 137.83 1.09 4.43 16 3 N -0.44 -12.65 10.90 -175.24 -1.91 -14.56 16 4 C -0.12 -3.69 7.05 41.23 0.29 -3.40 16 5 C 0.60 20.91 7.77 86.34 0.67 21.58 16 6 O -0.58 -22.46 15.75 -4.58 -0.07 -22.53 16 7 N -0.70 -23.11 5.54 -471.14 -2.61 -25.72 16 8 C 0.17 5.61 5.66 85.63 0.48 6.09 16 9 C -0.14 -5.13 5.22 -15.14 -0.08 -5.21 16 10 C -0.14 -5.85 9.47 27.11 0.26 -5.59 16 11 C 0.21 10.56 5.23 85.42 0.45 11.00 16 12 N -0.61 -32.22 3.01 -703.03 -2.11 -34.33 16 13 C -0.26 -14.54 9.71 84.03 0.82 -13.73 16 14 H 0.07 3.89 7.88 -2.91 -0.02 3.86 16 15 C -0.06 -3.24 5.01 84.86 0.42 -2.81 16 16 N -0.94 -56.89 11.08 21.65 0.24 -56.65 16 17 Si 0.97 46.08 29.58 68.60 2.03 48.11 16 18 H -0.28 -13.26 7.11 99.48 0.71 -12.56 16 19 H -0.29 -13.92 7.11 99.48 0.71 -13.22 16 20 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 21 C 0.14 5.99 6.59 86.31 0.57 6.56 16 22 C -0.08 -3.00 5.95 29.71 0.18 -2.82 16 23 C 0.08 1.91 6.72 39.23 0.26 2.17 16 24 C -0.12 -2.45 9.73 22.30 0.22 -2.23 16 25 C -0.08 -0.83 10.08 22.35 0.23 -0.60 16 26 C -0.13 -0.67 9.98 22.05 0.22 -0.45 16 27 C 0.05 0.39 10.77 83.22 0.90 1.29 16 28 N -0.36 -6.59 2.94 -337.20 -0.99 -7.58 16 29 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.11 0.30 7.98 -2.39 -0.02 0.28 16 31 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.41 13.22 8.17 -92.71 -0.76 12.46 16 33 H 0.06 2.18 7.78 -2.39 -0.02 2.16 16 34 H 0.07 2.34 8.11 -2.39 -0.02 2.32 16 35 H 0.11 4.14 7.73 -2.91 -0.02 4.11 16 36 H 0.01 0.73 8.14 -2.39 -0.02 0.71 16 37 H 0.06 3.39 6.41 -2.39 -0.02 3.38 16 38 H 0.25 14.62 8.31 -92.71 -0.77 13.85 16 39 H 0.03 1.07 8.14 -2.38 -0.02 1.05 16 40 H 0.06 2.56 7.96 -2.39 -0.02 2.54 16 41 H 0.07 2.45 8.14 -2.39 -0.02 2.44 16 42 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 43 H 0.14 3.32 7.17 -2.91 -0.02 3.30 16 44 H 0.17 0.69 8.06 -2.91 -0.02 0.66 16 45 H 0.20 -0.78 8.06 -2.91 -0.02 -0.80 16 46 H 0.21 -0.39 7.94 -2.91 -0.02 -0.42 16 Total: -1.00 -80.68 383.74 2.53 -78.15 By element: Atomic # 1 Polarization: 18.42 SS G_CDS: 0.25 Total: 18.67 kcal Atomic # 6 Polarization: 8.72 SS G_CDS: 7.71 Total: 16.43 kcal Atomic # 7 Polarization: -131.45 SS G_CDS: -7.39 Total: -138.84 kcal Atomic # 8 Polarization: -22.46 SS G_CDS: -0.07 Total: -22.53 kcal Atomic # 14 Polarization: 46.08 SS G_CDS: 2.03 Total: 48.11 kcal Total: -80.68 2.53 -78.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000943669.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.750 kcal (2) G-P(sol) polarization free energy of solvation -80.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.151 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds