Wall clock time and date at job start Tue Mar 31 2020 23:08:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.40155 * 120.29692 * 2 1 4 4 C 1.35185 * 120.31722 * 180.02562 * 3 2 1 5 5 N 1.36238 * 120.70872 * 0.02562 * 4 3 2 6 6 N 1.40022 * 132.01661 * 180.02562 * 5 4 3 7 7 C 1.30735 * 109.60397 * 179.72939 * 6 5 4 8 8 C 1.40551 * 108.75028 * 0.39206 * 7 6 5 9 9 C 1.46565 * 126.58706 * 179.87702 * 8 7 6 10 10 O 1.21718 * 120.00346 * 206.36455 * 9 8 7 11 11 N 1.34781 * 119.99412 * 26.36305 * 9 8 7 12 12 C 1.47160 * 120.71269 * 4.38602 * 11 9 8 13 13 C 1.53886 * 108.03522 * 132.73202 * 12 11 9 14 14 H 1.08993 * 112.10081 * 181.90794 * 13 12 11 15 15 C 1.54545 * 108.37000 * 306.25470 * 13 12 11 16 16 C 1.54824 * 104.74555 * 89.16688 * 15 13 12 17 17 C 1.54544 * 104.74804 * 0.02562 * 16 15 13 18 18 H 1.08997 * 112.68631 * 146.80597 * 17 16 15 19 19 C 1.47163 * 120.70304 * 184.36098 * 11 9 8 20 20 N 1.48306 * 107.20470 * 58.35704 * 13 12 11 21 21 C 1.36936 * 128.07497 * 106.09886 * 20 13 12 22 22 H 1.08004 * 120.00325 * 165.07017 * 21 20 13 23 23 C 1.38812 * 120.00285 * 345.06581 * 21 20 13 24 24 N 1.31618 * 119.99762 * 350.56072 * 23 21 20 25 25 Si 1.86799 * 120.00343 * 170.55341 * 23 21 20 26 26 H 1.48495 * 109.47340 * 180.02562 * 25 23 21 27 27 H 1.48496 * 109.47087 * 300.00890 * 25 23 21 28 28 H 1.48504 * 109.46861 * 60.00607 * 25 23 21 29 29 C 1.36575 * 120.07782 * 359.97438 * 5 4 3 30 30 C 1.36448 * 120.29009 * 180.02562 * 2 1 3 31 31 H 1.08998 * 109.47172 * 269.97878 * 1 2 3 32 32 H 1.09007 * 109.46925 * 29.97140 * 1 2 3 33 33 H 1.09002 * 109.47631 * 149.97094 * 1 2 3 34 34 H 1.08003 * 119.84174 * 0.05252 * 3 2 1 35 35 H 1.08004 * 119.64455 * 180.02562 * 4 3 2 36 36 H 1.08005 * 125.62381 * 180.26721 * 7 6 5 37 37 H 1.09009 * 109.74832 * 13.09983 * 12 11 9 38 38 H 1.08997 * 109.79153 * 252.39445 * 12 11 9 39 39 H 1.08991 * 110.36801 * 208.13781 * 15 13 12 40 40 H 1.09004 * 110.36147 * 330.45283 * 15 13 12 41 41 H 1.09006 * 110.31191 * 241.24547 * 16 15 13 42 42 H 1.09003 * 110.61607 * 118.91436 * 16 15 13 43 43 H 1.08991 * 109.75367 * 346.90242 * 19 11 9 44 44 H 1.09001 * 109.74857 * 107.59092 * 19 11 9 45 45 H 0.96999 * 120.00016 * 179.97438 * 24 23 21 46 46 H 1.07993 * 120.37702 * 0.02562 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2141 1.2101 0.0000 4 6 3.5659 1.2106 -0.0005 5 7 4.2621 0.0395 -0.0016 6 7 5.6352 -0.2346 -0.0018 7 6 5.8243 -1.5281 0.0028 8 6 4.5727 -2.1677 -0.0027 9 6 4.3303 -3.6132 -0.0027 10 8 3.3005 -4.0576 -0.4755 11 7 5.2479 -4.4502 0.5208 12 6 6.4533 -3.9255 1.1820 13 6 6.6246 -4.6679 2.5191 14 1 7.4846 -4.3053 3.0821 15 6 5.3082 -4.5412 3.3186 16 6 4.4578 -5.7557 2.8725 17 6 5.3424 -6.4998 1.8467 18 1 5.1956 -7.5796 1.8702 19 6 5.0653 -5.9085 0.4438 20 7 6.7280 -6.1142 2.2077 21 6 7.8437 -6.9074 2.2405 22 1 7.7426 -7.9826 2.2263 23 6 9.1049 -6.3297 2.2918 24 7 9.2414 -5.0316 2.1223 25 14 10.6081 -7.3944 2.6017 26 1 11.8246 -6.5429 2.6101 27 1 10.4711 -8.0741 3.9148 28 1 10.7236 -8.4126 1.5268 29 6 3.5959 -1.1528 -0.0016 30 6 2.1952 -1.1782 -0.0005 31 1 -0.3633 -0.0004 1.0276 32 1 -0.3633 0.8903 -0.5134 33 1 -0.3634 -0.8897 -0.5143 34 1 1.6763 2.1468 0.0009 35 1 4.0998 2.1495 -0.0001 36 1 6.7840 -2.0236 0.0079 37 1 6.3371 -2.8574 1.3660 38 1 7.3251 -4.0977 0.5508 39 1 5.5085 -4.5876 4.3890 40 1 4.7997 -3.6105 3.0670 41 1 3.5337 -5.4185 2.4029 42 1 4.2367 -6.4022 3.7218 43 1 4.0421 -6.1363 0.1454 44 1 5.7626 -6.3292 -0.2806 45 1 10.1226 -4.6279 2.1585 46 1 1.6662 -2.1197 -0.0014 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001029346589.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:08:27 Heat of formation + Delta-G solvation = 118.270505 kcal Electronic energy + Delta-G solvation = -30502.453686 eV Core-core repulsion = 26588.388598 eV Total energy + Delta-G solvation = -3914.065088 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.16868 -39.76547 -37.82685 -37.35737 -33.85722 -33.45942 -32.38866 -31.39453 -30.70213 -29.37001 -29.16587 -27.43614 -25.97453 -24.34488 -23.79570 -23.42203 -21.96142 -21.93856 -19.69332 -19.55189 -18.63075 -17.78838 -16.80995 -16.60620 -15.87025 -15.70978 -15.51523 -15.10327 -14.90672 -14.57712 -14.48233 -13.86100 -13.73144 -13.67854 -13.24842 -12.95300 -12.83466 -12.68114 -12.63938 -12.10856 -11.93546 -11.74315 -11.68561 -11.61603 -11.37726 -11.00178 -10.85350 -10.83077 -10.74502 -10.37056 -10.29721 -10.04170 -9.79949 -9.58343 -9.53211 -9.35557 -9.29098 -8.72402 -8.00795 -7.57826 -6.79965 -5.84267 -3.17899 0.56691 0.93773 2.14919 2.37311 3.10237 3.37003 3.42594 3.42829 3.61501 3.90170 4.18121 4.35839 4.43203 4.49642 4.71248 4.96006 5.09009 5.21600 5.26227 5.29280 5.33359 5.36507 5.45895 5.52316 5.66157 5.72647 5.77409 5.83216 5.86337 5.98937 6.07609 6.14010 6.18813 6.29146 6.35488 6.43906 6.48584 6.58577 6.66595 6.71440 6.76827 6.77620 6.93707 7.04135 7.30597 7.47987 7.51303 7.67757 8.13910 8.21489 8.85335 9.06826 9.68794 10.46332 11.29228 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.019537 B = 0.003356 C = 0.003066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1432.805959 B = 8341.343470 C = 9129.823979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.051 4.051 3 C -0.163 4.163 4 C 0.114 3.886 5 N -0.272 5.272 6 N -0.323 5.323 7 C 0.119 3.881 8 C -0.296 4.296 9 C 0.591 3.409 10 O -0.573 6.573 11 N -0.586 5.586 12 C 0.093 3.907 13 C 0.168 3.832 14 H 0.118 0.882 15 C -0.134 4.134 16 C -0.122 4.122 17 C 0.134 3.866 18 H 0.077 0.923 19 C 0.104 3.896 20 N -0.585 5.585 21 C -0.223 4.223 22 H 0.076 0.924 23 C -0.003 4.003 24 N -0.916 5.916 25 Si 0.912 3.088 26 H -0.291 1.291 27 H -0.286 1.286 28 H -0.285 1.285 29 C 0.157 3.843 30 C -0.106 4.106 31 H 0.078 0.922 32 H 0.072 0.928 33 H 0.074 0.926 34 H 0.154 0.846 35 H 0.170 0.830 36 H 0.209 0.791 37 H 0.069 0.931 38 H 0.084 0.916 39 H 0.053 0.947 40 H 0.049 0.951 41 H 0.055 0.945 42 H 0.053 0.947 43 H 0.075 0.925 44 H 0.062 0.938 45 H 0.255 0.745 46 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.279 12.383 -2.530 19.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.057 4.057 3 C -0.185 4.185 4 C -0.013 4.013 5 N -0.037 5.037 6 N -0.144 5.144 7 C -0.061 4.061 8 C -0.310 4.310 9 C 0.380 3.620 10 O -0.455 6.455 11 N -0.317 5.317 12 C -0.030 4.030 13 C 0.060 3.940 14 H 0.136 0.864 15 C -0.173 4.173 16 C -0.161 4.161 17 C 0.026 3.974 18 H 0.095 0.905 19 C -0.020 4.020 20 N -0.306 5.306 21 C -0.351 4.351 22 H 0.094 0.906 23 C -0.200 4.200 24 N -0.563 5.563 25 Si 0.742 3.258 26 H -0.216 1.216 27 H -0.213 1.213 28 H -0.212 1.212 29 C 0.037 3.963 30 C -0.126 4.126 31 H 0.096 0.904 32 H 0.091 0.909 33 H 0.093 0.907 34 H 0.172 0.828 35 H 0.187 0.813 36 H 0.225 0.775 37 H 0.087 0.913 38 H 0.102 0.898 39 H 0.072 0.928 40 H 0.067 0.933 41 H 0.074 0.926 42 H 0.072 0.928 43 H 0.093 0.907 44 H 0.080 0.920 45 H 0.065 0.935 46 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -13.747 13.225 -2.759 19.274 hybrid contribution 0.709 -1.152 0.102 1.357 sum -13.038 12.073 -2.657 17.966 Atomic orbital electron populations 1.20813 0.89670 1.03524 1.03031 1.19981 0.97187 0.92169 0.96343 1.20750 0.91850 0.99456 1.06415 1.21499 0.91999 0.88435 0.99327 1.46094 1.06546 1.05151 1.45915 1.77625 0.87726 1.17226 1.31826 1.24590 0.99473 0.90009 0.92000 1.19811 0.91294 0.93884 1.26020 1.16888 0.83063 0.84165 0.77882 1.90692 1.27312 1.78073 1.49433 1.47940 1.22055 1.06410 1.55255 1.22989 0.85857 0.96961 0.97228 1.21852 0.95119 0.85219 0.91788 0.86426 1.22692 0.98216 0.96781 0.99627 1.22525 0.97699 0.97313 0.98548 1.22147 0.87074 0.96968 0.91237 0.90474 1.22493 1.00797 0.79268 0.99472 1.45178 1.02446 1.05799 1.77192 1.18975 0.82963 0.89224 1.43984 0.90644 1.24795 0.97223 0.96187 1.01819 1.69800 1.22426 1.09150 1.54876 0.86207 0.82209 0.79202 0.78148 1.21637 1.21262 1.21160 1.19246 0.92870 0.85756 0.98416 1.20634 0.90038 0.99938 1.01947 0.90355 0.90947 0.90684 0.82802 0.81283 0.77457 0.91337 0.89775 0.92845 0.93251 0.92634 0.92787 0.90708 0.91982 0.93502 0.82727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.73 10.03 36.01 0.36 -0.37 16 2 C -0.05 -0.50 5.89 -104.55 -0.62 -1.11 16 3 C -0.16 -1.32 9.67 -39.95 -0.39 -1.71 16 4 C 0.11 1.15 11.17 -16.68 -0.19 0.96 16 5 N -0.27 -3.93 3.86 -10.54 -0.04 -3.98 16 6 N -0.32 -5.22 12.57 30.75 0.39 -4.83 16 7 C 0.12 1.97 9.55 -17.15 -0.16 1.81 16 8 C -0.30 -5.25 5.66 -104.67 -0.59 -5.84 16 9 C 0.59 11.63 7.62 -12.90 -0.10 11.53 16 10 O -0.57 -12.26 15.72 5.17 0.08 -12.18 16 11 N -0.59 -11.58 2.28 -172.57 -0.39 -11.97 16 12 C 0.09 1.89 4.38 -3.22 -0.01 1.87 16 13 C 0.17 3.69 3.09 -65.66 -0.20 3.49 16 14 H 0.12 2.92 6.36 -51.93 -0.33 2.59 16 15 C -0.13 -2.60 6.23 -24.96 -0.16 -2.75 16 16 C -0.12 -2.26 6.24 -24.96 -0.16 -2.42 16 17 C 0.13 2.71 4.32 -65.21 -0.28 2.43 16 18 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 19 C 0.10 2.07 5.98 -2.76 -0.02 2.05 16 20 N -0.59 -13.82 2.79 -152.11 -0.42 -14.24 16 21 C -0.22 -5.80 10.37 -15.06 -0.16 -5.95 16 22 H 0.08 1.92 7.85 -52.48 -0.41 1.51 16 23 C 0.00 -0.09 5.42 -17.43 -0.09 -0.18 16 24 N -0.92 -24.32 10.35 55.49 0.57 -23.75 16 25 Si 0.91 21.06 29.56 -169.99 -5.03 16.04 16 26 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 27 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 28 H -0.29 -6.58 7.11 56.52 0.40 -6.17 16 29 C 0.16 2.49 6.75 -84.06 -0.57 1.92 16 30 C -0.11 -1.40 9.48 -39.53 -0.37 -1.78 16 31 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.07 0.33 8.10 -51.93 -0.42 -0.09 16 33 H 0.07 0.49 8.09 -51.93 -0.42 0.07 16 34 H 0.15 0.67 8.06 -52.48 -0.42 0.25 16 35 H 0.17 1.18 8.06 -52.48 -0.42 0.75 16 36 H 0.21 3.27 6.08 -52.48 -0.32 2.95 16 37 H 0.07 1.27 4.35 -51.92 -0.23 1.05 16 38 H 0.08 1.91 7.72 -51.93 -0.40 1.51 16 39 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.05 0.92 7.86 -51.93 -0.41 0.52 16 41 H 0.05 1.01 7.87 -51.93 -0.41 0.60 16 42 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 43 H 0.07 1.44 7.08 -51.93 -0.37 1.07 16 44 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 45 H 0.25 6.68 8.31 -40.82 -0.34 6.34 16 46 H 0.16 2.13 7.53 -52.49 -0.40 1.73 16 LS Contribution 364.32 15.07 5.49 5.49 Total: -1.00 -31.09 364.32 -9.26 -40.35 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: -6.20 Total: 5.12 kcal Atomic # 6 Polarization: 7.65 SS G_CDS: -3.70 Total: 3.95 kcal Atomic # 7 Polarization: -58.87 SS G_CDS: 0.10 Total: -58.77 kcal Atomic # 8 Polarization: -12.26 SS G_CDS: 0.08 Total: -12.18 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.03 Total: 16.04 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -31.09 -9.26 -40.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029346589.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.620 kcal (2) G-P(sol) polarization free energy of solvation -31.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 127.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.350 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds