Wall clock time and date at job start Tue Mar 31 2020 23:08:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.40155 * 120.29692 * 2 1 4 4 C 1.35185 * 120.31722 * 180.02562 * 3 2 1 5 5 N 1.36238 * 120.70872 * 0.02562 * 4 3 2 6 6 N 1.40022 * 132.01661 * 180.02562 * 5 4 3 7 7 C 1.30735 * 109.60397 * 179.72939 * 6 5 4 8 8 C 1.40551 * 108.75028 * 0.39206 * 7 6 5 9 9 C 1.46565 * 126.58706 * 179.87702 * 8 7 6 10 10 O 1.21718 * 120.00346 * 206.36455 * 9 8 7 11 11 N 1.34781 * 119.99412 * 26.36305 * 9 8 7 12 12 C 1.47160 * 120.71269 * 4.38602 * 11 9 8 13 13 C 1.53886 * 108.03522 * 132.73202 * 12 11 9 14 14 H 1.08993 * 112.10081 * 181.90794 * 13 12 11 15 15 C 1.54545 * 108.37000 * 306.25470 * 13 12 11 16 16 C 1.54824 * 104.74555 * 89.16688 * 15 13 12 17 17 C 1.54544 * 104.74804 * 0.02562 * 16 15 13 18 18 H 1.08997 * 112.68631 * 146.80597 * 17 16 15 19 19 C 1.47163 * 120.70304 * 184.36098 * 11 9 8 20 20 N 1.48306 * 107.20470 * 58.35704 * 13 12 11 21 21 C 1.36936 * 128.07497 * 106.09886 * 20 13 12 22 22 H 1.08004 * 120.00325 * 165.07017 * 21 20 13 23 23 C 1.38812 * 120.00285 * 345.06581 * 21 20 13 24 24 N 1.31618 * 119.99762 * 350.56072 * 23 21 20 25 25 Si 1.86799 * 120.00343 * 170.55341 * 23 21 20 26 26 H 1.48495 * 109.47340 * 180.02562 * 25 23 21 27 27 H 1.48496 * 109.47087 * 300.00890 * 25 23 21 28 28 H 1.48504 * 109.46861 * 60.00607 * 25 23 21 29 29 C 1.36575 * 120.07782 * 359.97438 * 5 4 3 30 30 C 1.36448 * 120.29009 * 180.02562 * 2 1 3 31 31 H 1.08998 * 109.47172 * 269.97878 * 1 2 3 32 32 H 1.09007 * 109.46925 * 29.97140 * 1 2 3 33 33 H 1.09002 * 109.47631 * 149.97094 * 1 2 3 34 34 H 1.08003 * 119.84174 * 0.05252 * 3 2 1 35 35 H 1.08004 * 119.64455 * 180.02562 * 4 3 2 36 36 H 1.08005 * 125.62381 * 180.26721 * 7 6 5 37 37 H 1.09009 * 109.74832 * 13.09983 * 12 11 9 38 38 H 1.08997 * 109.79153 * 252.39445 * 12 11 9 39 39 H 1.08991 * 110.36801 * 208.13781 * 15 13 12 40 40 H 1.09004 * 110.36147 * 330.45283 * 15 13 12 41 41 H 1.09006 * 110.31191 * 241.24547 * 16 15 13 42 42 H 1.09003 * 110.61607 * 118.91436 * 16 15 13 43 43 H 1.08991 * 109.75367 * 346.90242 * 19 11 9 44 44 H 1.09001 * 109.74857 * 107.59092 * 19 11 9 45 45 H 0.96999 * 120.00016 * 179.97438 * 24 23 21 46 46 H 1.07993 * 120.37702 * 0.02562 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2141 1.2101 0.0000 4 6 3.5659 1.2106 -0.0005 5 7 4.2621 0.0395 -0.0016 6 7 5.6352 -0.2346 -0.0018 7 6 5.8243 -1.5281 0.0028 8 6 4.5727 -2.1677 -0.0027 9 6 4.3303 -3.6132 -0.0027 10 8 3.3005 -4.0576 -0.4755 11 7 5.2479 -4.4502 0.5208 12 6 6.4533 -3.9255 1.1820 13 6 6.6246 -4.6679 2.5191 14 1 7.4846 -4.3053 3.0821 15 6 5.3082 -4.5412 3.3186 16 6 4.4578 -5.7557 2.8725 17 6 5.3424 -6.4998 1.8467 18 1 5.1956 -7.5796 1.8702 19 6 5.0653 -5.9085 0.4438 20 7 6.7280 -6.1142 2.2077 21 6 7.8437 -6.9074 2.2405 22 1 7.7426 -7.9826 2.2263 23 6 9.1049 -6.3297 2.2918 24 7 9.2414 -5.0316 2.1223 25 14 10.6081 -7.3944 2.6017 26 1 11.8246 -6.5429 2.6101 27 1 10.4711 -8.0741 3.9148 28 1 10.7236 -8.4126 1.5268 29 6 3.5959 -1.1528 -0.0016 30 6 2.1952 -1.1782 -0.0005 31 1 -0.3633 -0.0004 1.0276 32 1 -0.3633 0.8903 -0.5134 33 1 -0.3634 -0.8897 -0.5143 34 1 1.6763 2.1468 0.0009 35 1 4.0998 2.1495 -0.0001 36 1 6.7840 -2.0236 0.0079 37 1 6.3371 -2.8574 1.3660 38 1 7.3251 -4.0977 0.5508 39 1 5.5085 -4.5876 4.3890 40 1 4.7997 -3.6105 3.0670 41 1 3.5337 -5.4185 2.4029 42 1 4.2367 -6.4022 3.7218 43 1 4.0421 -6.1363 0.1454 44 1 5.7626 -6.3292 -0.2806 45 1 10.1226 -4.6279 2.1585 46 1 1.6662 -2.1197 -0.0014 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001029346589.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:08:26 Heat of formation + Delta-G solvation = 101.242034 kcal Electronic energy + Delta-G solvation = -30503.192096 eV Core-core repulsion = 26588.388598 eV Total energy + Delta-G solvation = -3914.803498 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -43.26019 -41.33914 -39.17483 -38.57761 -35.37724 -34.67308 -34.11986 -32.41343 -32.28159 -31.03499 -30.37518 -28.48731 -27.48861 -25.74331 -25.58185 -24.55785 -23.27742 -22.94832 -21.31582 -21.04831 -20.27214 -19.10781 -18.15449 -17.77012 -17.14066 -17.03933 -16.93942 -16.58884 -16.37942 -15.82677 -15.69872 -15.43513 -15.14060 -14.67340 -14.66273 -14.32640 -14.30834 -14.06937 -13.53460 -13.49126 -13.28451 -13.15394 -12.92847 -12.89394 -12.70420 -12.67794 -12.55706 -12.35986 -12.01688 -11.96421 -11.78576 -11.47594 -11.45193 -11.35760 -11.14325 -10.91438 -10.58443 -10.30010 -9.68387 -8.78315 -8.57722 -7.82418 -5.16924 -0.36644 -0.02134 1.07082 1.15637 1.51669 1.52663 1.58532 2.06017 2.20359 2.50026 2.55118 3.15660 3.36704 3.44942 3.51838 3.69116 3.85713 3.92690 4.06714 4.11074 4.14529 4.22178 4.22919 4.34364 4.44430 4.47276 4.53463 4.61130 4.74888 4.79883 4.82705 4.85883 4.92230 4.98889 5.04901 5.06733 5.12139 5.14185 5.23165 5.35227 5.35792 5.39842 5.48736 5.55581 5.63521 5.78607 5.86314 6.25150 6.35472 6.63944 7.10158 7.31709 7.74627 8.54795 9.29113 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.019537 B = 0.003356 C = 0.003066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1432.805959 B = 8341.343470 C = 9129.823979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.019 4.019 3 C -0.141 4.141 4 C 0.100 3.900 5 N -0.273 5.273 6 N -0.342 5.342 7 C 0.117 3.883 8 C -0.343 4.343 9 C 0.594 3.406 10 O -0.596 6.596 11 N -0.589 5.589 12 C 0.113 3.887 13 C 0.164 3.836 14 H 0.087 0.913 15 C -0.125 4.125 16 C -0.110 4.110 17 C 0.132 3.868 18 H 0.087 0.913 19 C 0.109 3.891 20 N -0.603 5.603 21 C -0.236 4.236 22 H 0.076 0.924 23 C -0.050 4.050 24 N -0.933 5.933 25 Si 0.970 3.030 26 H -0.296 1.296 27 H -0.283 1.283 28 H -0.283 1.283 29 C 0.155 3.845 30 C -0.147 4.147 31 H 0.094 0.906 32 H 0.103 0.897 33 H 0.071 0.929 34 H 0.208 0.792 35 H 0.204 0.796 36 H 0.204 0.796 37 H 0.084 0.916 38 H 0.053 0.947 39 H 0.058 0.942 40 H 0.055 0.945 41 H 0.061 0.939 42 H 0.069 0.931 43 H 0.082 0.918 44 H 0.044 0.956 45 H 0.249 0.751 46 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.053 14.954 -2.216 22.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.025 4.025 3 C -0.162 4.162 4 C -0.025 4.025 5 N -0.037 5.037 6 N -0.163 5.163 7 C -0.062 4.062 8 C -0.357 4.357 9 C 0.385 3.615 10 O -0.480 6.480 11 N -0.319 5.319 12 C -0.011 4.011 13 C 0.057 3.943 14 H 0.105 0.895 15 C -0.164 4.164 16 C -0.149 4.149 17 C 0.024 3.976 18 H 0.105 0.895 19 C -0.015 4.015 20 N -0.325 5.325 21 C -0.365 4.365 22 H 0.094 0.906 23 C -0.245 4.245 24 N -0.580 5.580 25 Si 0.800 3.200 26 H -0.222 1.222 27 H -0.210 1.210 28 H -0.209 1.209 29 C 0.034 3.966 30 C -0.167 4.167 31 H 0.113 0.887 32 H 0.122 0.878 33 H 0.090 0.910 34 H 0.225 0.775 35 H 0.221 0.779 36 H 0.220 0.780 37 H 0.102 0.898 38 H 0.071 0.929 39 H 0.076 0.924 40 H 0.074 0.926 41 H 0.079 0.921 42 H 0.088 0.912 43 H 0.101 0.899 44 H 0.063 0.937 45 H 0.058 0.942 46 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -16.536 15.802 -2.444 23.002 hybrid contribution 1.322 -1.723 -0.046 2.172 sum -15.214 14.079 -2.491 20.878 Atomic orbital electron populations 1.20980 0.86854 1.04978 1.04410 1.20534 0.99110 0.91385 0.91492 1.21436 0.91035 1.00802 1.02934 1.22457 0.93148 0.88247 0.98682 1.46324 1.05926 1.06075 1.45413 1.77511 0.89152 1.16623 1.33008 1.24443 0.99121 0.90417 0.92227 1.19641 0.92503 0.93086 1.30507 1.17147 0.82365 0.85043 0.76922 1.90651 1.28182 1.78729 1.50452 1.47903 1.22012 1.06352 1.55631 1.22628 0.85003 0.97666 0.95763 1.21780 0.95286 0.84707 0.92546 0.89478 1.22580 0.96846 0.97536 0.99405 1.22427 0.97164 0.96827 0.98484 1.22311 0.85765 0.97829 0.91700 0.89514 1.22372 1.00623 0.79590 0.98953 1.45346 1.03156 1.06330 1.77624 1.19241 0.84018 0.89666 1.43533 0.90621 1.25456 0.99389 0.97275 1.02365 1.69969 1.22243 1.10130 1.55640 0.85290 0.79169 0.77675 0.77889 1.22215 1.20955 1.20924 1.19437 0.93716 0.85813 0.97657 1.20665 0.89100 1.01141 1.05790 0.88716 0.87830 0.90997 0.77486 0.77907 0.78013 0.89805 0.92901 0.92352 0.92640 0.92051 0.91224 0.89927 0.93747 0.94178 0.84152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.94 10.03 71.24 0.71 -0.23 16 2 C -0.02 -0.30 5.89 -19.82 -0.12 -0.42 16 3 C -0.14 -1.53 9.67 22.03 0.21 -1.32 16 4 C 0.10 1.64 11.17 83.30 0.93 2.57 16 5 N -0.27 -7.57 3.86 -187.27 -0.72 -8.29 16 6 N -0.34 -11.13 12.57 -56.62 -0.71 -11.85 16 7 C 0.12 4.08 9.55 85.42 0.82 4.90 16 8 C -0.34 -12.64 5.66 -19.90 -0.11 -12.75 16 9 C 0.59 24.34 7.62 86.41 0.66 24.99 16 10 O -0.60 -26.36 15.72 -4.40 -0.07 -26.43 16 11 N -0.59 -24.28 2.28 -818.09 -1.87 -26.15 16 12 C 0.11 4.84 4.38 86.55 0.38 5.22 16 13 C 0.16 7.49 3.09 45.47 0.14 7.63 16 14 H 0.09 4.53 6.36 -2.39 -0.02 4.51 16 15 C -0.12 -4.85 6.23 31.74 0.20 -4.65 16 16 C -0.11 -4.03 6.24 31.74 0.20 -3.83 16 17 C 0.13 5.38 4.32 45.77 0.20 5.58 16 18 H 0.09 3.34 8.14 -2.39 -0.02 3.32 16 19 C 0.11 4.49 5.98 86.85 0.52 5.00 16 20 N -0.60 -29.25 2.79 -635.16 -1.77 -31.03 16 21 C -0.24 -12.54 10.37 84.03 0.87 -11.67 16 22 H 0.08 3.92 7.85 -2.91 -0.02 3.89 16 23 C -0.05 -2.69 5.42 84.86 0.46 -2.23 16 24 N -0.93 -51.49 10.35 21.65 0.22 -51.27 16 25 Si 0.97 44.27 29.56 68.60 2.03 46.30 16 26 H -0.30 -13.65 7.11 99.48 0.71 -12.94 16 27 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 28 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 29 C 0.15 4.89 6.75 39.50 0.27 5.15 16 30 C -0.15 -3.75 9.48 22.30 0.21 -3.54 16 31 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.10 0.28 8.10 -2.38 -0.02 0.27 16 33 H 0.07 0.70 8.09 -2.39 -0.02 0.68 16 34 H 0.21 0.13 8.06 -2.91 -0.02 0.11 16 35 H 0.20 1.87 8.06 -2.91 -0.02 1.84 16 36 H 0.20 6.95 6.08 -2.91 -0.02 6.93 16 37 H 0.08 3.31 4.35 -2.38 -0.01 3.30 16 38 H 0.05 2.57 7.72 -2.39 -0.02 2.56 16 39 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 40 H 0.05 2.08 7.86 -2.38 -0.02 2.06 16 41 H 0.06 2.19 7.87 -2.38 -0.02 2.17 16 42 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 43 H 0.08 3.24 7.08 -2.39 -0.02 3.23 16 44 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 45 H 0.25 13.56 8.31 -92.71 -0.77 12.78 16 46 H 0.14 3.93 7.53 -2.91 -0.02 3.90 16 Total: -1.00 -71.28 364.32 4.66 -66.63 By element: Atomic # 1 Polarization: 20.64 SS G_CDS: 1.01 Total: 21.65 kcal Atomic # 6 Polarization: 13.89 SS G_CDS: 6.55 Total: 20.43 kcal Atomic # 7 Polarization: -123.73 SS G_CDS: -4.85 Total: -128.58 kcal Atomic # 8 Polarization: -26.36 SS G_CDS: -0.07 Total: -26.43 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.30 kcal Total: -71.28 4.66 -66.63 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029346589.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.868 kcal (2) G-P(sol) polarization free energy of solvation -71.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.626 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds