Wall clock time and date at job start Tue Mar 31 2020 23:09:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.40567 * 120.13904 * 2 1 4 4 C 1.34854 * 120.34561 * 180.02562 * 3 2 1 5 5 N 1.36679 * 120.63561 * 359.97438 * 4 3 2 6 6 C 1.36201 * 132.29411 * 180.37737 * 5 4 3 7 7 C 1.36577 * 107.09457 * 180.02562 * 6 5 4 8 8 C 1.47593 * 125.91768 * 179.84240 * 7 6 5 9 9 O 1.21592 * 120.00066 * 6.38246 * 8 7 6 10 10 N 1.34777 * 119.99782 * 186.38236 * 8 7 6 11 11 C 1.47154 * 120.70906 * 6.58643 * 10 8 7 12 12 C 1.55891 * 107.95012 * 132.45325 * 11 10 8 13 13 H 1.09002 * 112.45898 * 181.84701 * 12 11 10 14 14 C 1.54552 * 108.44416 * 307.13317 * 12 11 10 15 15 C 1.53726 * 104.95282 * 88.28658 * 14 12 11 16 16 C 1.54543 * 104.95984 * 359.97438 * 15 14 12 17 17 H 1.08994 * 112.18600 * 146.28676 * 16 15 14 18 18 C 1.47159 * 120.70485 * 186.60677 * 10 8 7 19 19 N 1.48312 * 104.35528 * 24.57767 * 16 15 14 20 20 C 1.36932 * 128.07589 * 139.08222 * 19 16 15 21 21 H 1.07996 * 119.99981 * 343.14555 * 20 19 16 22 22 C 1.38809 * 120.00083 * 163.14914 * 20 19 16 23 23 N 1.31621 * 119.99905 * 351.90020 * 22 20 19 24 24 Si 1.86802 * 120.00396 * 171.90623 * 22 20 19 25 25 H 1.48502 * 109.47273 * 179.97438 * 24 22 20 26 26 H 1.48501 * 109.46865 * 299.99848 * 24 22 20 27 27 H 1.48504 * 109.46808 * 59.99486 * 24 22 20 28 28 N 1.34585 * 108.16168 * 359.58480 * 7 6 5 29 29 C 1.32229 * 109.02528 * 0.25641 * 28 7 6 30 30 C 1.35899 * 120.12935 * 180.02562 * 2 1 3 31 31 H 1.09003 * 109.46921 * 269.98018 * 1 2 3 32 32 H 1.09001 * 109.46848 * 29.97382 * 1 2 3 33 33 H 1.08995 * 109.47571 * 149.97254 * 1 2 3 34 34 H 1.08001 * 119.82911 * 0.04877 * 3 2 1 35 35 H 1.07995 * 119.68601 * 180.02562 * 4 3 2 36 36 H 1.08002 * 126.45222 * 359.95273 * 6 5 4 37 37 H 1.08994 * 109.75210 * 252.40815 * 11 10 8 38 38 H 1.09001 * 109.75375 * 13.10058 * 11 10 8 39 39 H 1.08995 * 110.36336 * 207.00685 * 14 12 11 40 40 H 1.08996 * 110.36017 * 329.20750 * 14 12 11 41 41 H 1.09003 * 110.41742 * 241.06715 * 15 14 12 42 42 H 1.09001 * 110.20798 * 118.82498 * 15 14 12 43 43 H 1.09003 * 109.75141 * 107.58914 * 18 10 8 44 44 H 1.08993 * 109.79400 * 346.88065 * 18 10 8 45 45 H 0.96999 * 120.00011 * 179.97438 * 23 22 20 46 46 H 1.08000 * 120.32872 * 359.97438 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2128 1.2156 0.0000 4 6 3.5613 1.2205 -0.0005 5 7 4.2620 0.0470 -0.0005 6 6 5.5969 -0.2234 0.0057 7 6 5.7312 -1.5826 0.0015 8 6 7.0058 -2.3267 0.0024 9 8 8.0582 -1.7298 0.1242 10 7 7.0033 -3.6677 -0.1319 11 6 5.7558 -4.3914 -0.4240 12 6 6.0394 -5.3868 -1.5897 13 1 5.1503 -5.9420 -1.8888 14 6 6.6732 -4.6013 -2.7601 15 6 8.1849 -4.6265 -2.4822 16 6 8.3356 -5.4245 -1.1674 17 1 9.2544 -6.0103 -1.1445 18 6 8.2481 -4.4395 0.0110 19 7 7.1245 -6.2791 -1.1151 20 6 7.0312 -7.5885 -0.7255 21 1 7.9199 -8.1994 -0.6679 22 6 5.7943 -8.1306 -0.4046 23 7 4.7365 -7.3520 -0.3196 24 14 5.6309 -9.9653 -0.0934 25 1 4.2178 -10.2889 0.2287 26 1 6.0458 -10.7122 -1.3080 27 1 6.4994 -10.3531 1.0471 28 7 4.4999 -2.1258 0.0022 29 6 3.6009 -1.1561 0.0011 30 6 2.1891 -1.1754 -0.0005 31 1 -0.3633 -0.0004 1.0277 32 1 -0.3633 0.8902 -0.5134 33 1 -0.3634 -0.8897 -0.5142 34 1 1.6723 2.1507 0.0008 35 1 4.0928 2.1606 -0.0001 36 1 6.3983 0.5006 0.0114 37 1 5.4300 -4.9364 0.4620 38 1 4.9826 -3.6853 -0.7271 39 1 6.4564 -5.0930 -3.7084 40 1 6.3041 -3.5758 -2.7724 41 1 8.5653 -3.6128 -2.3560 42 1 8.7087 -5.1306 -3.2944 43 1 8.2340 -4.9906 0.9514 44 1 9.1045 -3.7656 -0.0080 45 1 3.8721 -7.7309 -0.0957 46 1 1.6566 -2.1150 -0.0005 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001029382504.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:09:27 Heat of formation + Delta-G solvation = 107.250892 kcal Electronic energy + Delta-G solvation = -30289.485903 eV Core-core repulsion = 26374.942969 eV Total energy + Delta-G solvation = -3914.542935 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.86808 -39.74488 -38.02462 -37.25168 -34.42867 -33.47835 -32.33291 -30.93493 -30.39040 -29.89321 -29.13323 -27.26173 -26.08528 -24.43884 -23.51876 -23.39413 -22.28887 -21.76853 -19.64124 -19.46499 -18.55983 -18.00808 -16.93031 -16.66342 -16.10283 -15.79004 -15.36385 -15.10429 -14.85227 -14.61895 -14.45255 -14.07668 -13.81957 -13.65952 -13.41065 -12.86705 -12.81633 -12.76856 -12.51523 -12.29221 -11.83328 -11.76248 -11.66781 -11.55944 -11.38660 -11.01281 -10.82840 -10.77834 -10.69075 -10.30762 -10.11858 -9.87922 -9.67489 -9.53199 -9.42531 -9.24161 -8.89156 -8.53988 -7.98510 -7.78981 -6.67114 -5.74093 -3.09634 0.53751 1.11651 2.24396 2.42911 3.28567 3.41716 3.46682 3.47149 3.67154 3.88516 4.04536 4.28626 4.49595 4.53985 4.60351 4.87501 5.02147 5.22907 5.30179 5.32326 5.35548 5.40341 5.43369 5.54063 5.69080 5.80537 5.84880 5.87900 5.91548 6.07359 6.10322 6.21446 6.28375 6.34247 6.42704 6.51792 6.57983 6.67966 6.78813 6.86939 6.91526 6.97190 7.05131 7.39724 7.50281 7.58656 7.75551 7.80508 8.23793 8.27503 8.77215 9.16007 9.77654 10.56982 11.38695 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013057 B = 0.003674 C = 0.003056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2143.989203 B = 7618.692352 C = 9159.992598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.078 4.078 3 C -0.137 4.137 4 C 0.056 3.944 5 N -0.367 5.367 6 C -0.030 4.030 7 C 0.024 3.976 8 C 0.585 3.415 9 O -0.566 6.566 10 N -0.569 5.569 11 C 0.089 3.911 12 C 0.168 3.832 13 H 0.115 0.885 14 C -0.134 4.134 15 C -0.123 4.123 16 C 0.134 3.866 17 H 0.076 0.924 18 C 0.101 3.899 19 N -0.587 5.587 20 C -0.227 4.227 21 H 0.074 0.926 22 C -0.002 4.002 23 N -0.910 5.910 24 Si 0.910 3.090 25 H -0.291 1.291 26 H -0.286 1.286 27 H -0.285 1.285 28 N -0.444 5.444 29 C 0.222 3.778 30 C -0.073 4.073 31 H 0.075 0.925 32 H 0.069 0.931 33 H 0.073 0.927 34 H 0.149 0.851 35 H 0.163 0.837 36 H 0.193 0.807 37 H 0.079 0.921 38 H 0.108 0.892 39 H 0.051 0.949 40 H 0.048 0.952 41 H 0.055 0.945 42 H 0.053 0.947 43 H 0.064 0.936 44 H 0.074 0.926 45 H 0.254 0.746 46 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.143 18.456 -0.842 19.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.084 4.084 3 C -0.158 4.158 4 C -0.065 4.065 5 N -0.040 5.040 6 C -0.164 4.164 7 C -0.109 4.109 8 C 0.371 3.629 9 O -0.447 6.447 10 N -0.297 5.297 11 C -0.034 4.034 12 C 0.061 3.939 13 H 0.133 0.867 14 C -0.173 4.173 15 C -0.162 4.162 16 C 0.026 3.974 17 H 0.094 0.906 18 C -0.024 4.024 19 N -0.308 5.308 20 C -0.355 4.355 21 H 0.091 0.909 22 C -0.199 4.199 23 N -0.556 5.556 24 Si 0.741 3.259 25 H -0.216 1.216 26 H -0.213 1.213 27 H -0.212 1.212 28 N -0.165 5.165 29 C -0.022 4.022 30 C -0.093 4.093 31 H 0.093 0.907 32 H 0.088 0.912 33 H 0.092 0.908 34 H 0.167 0.833 35 H 0.181 0.819 36 H 0.210 0.790 37 H 0.097 0.903 38 H 0.126 0.874 39 H 0.070 0.930 40 H 0.067 0.933 41 H 0.073 0.927 42 H 0.072 0.928 43 H 0.082 0.918 44 H 0.093 0.907 45 H 0.064 0.936 46 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -6.858 17.662 -0.690 18.960 hybrid contribution 0.056 -0.060 0.308 0.319 sum -6.803 17.603 -0.381 18.875 Atomic orbital electron populations 1.20754 0.89698 1.03372 1.02826 1.19719 0.97011 0.91976 0.99700 1.20699 0.92076 0.99229 1.03793 1.21602 0.93015 0.88696 1.03158 1.42805 1.07181 1.07734 1.46252 1.22524 0.83344 0.97865 1.12688 1.20803 0.92849 0.90805 1.06451 1.16989 0.85779 0.82213 0.77921 1.90713 1.31320 1.68753 1.53874 1.48085 1.11393 1.04665 1.65577 1.23604 0.83513 0.95285 1.01023 1.22301 0.93851 0.88704 0.89055 0.86698 1.22489 0.95771 0.99186 0.99858 1.22368 0.96880 0.99008 0.97960 1.21942 0.92613 0.90824 0.92033 0.90582 1.22400 0.85792 0.93912 1.00250 1.45189 1.02422 1.08218 1.74947 1.18933 0.93828 0.84188 1.38527 0.90873 1.24851 0.96328 0.97991 1.00736 1.69853 0.99317 1.33213 1.53176 0.86242 0.76675 0.85033 0.77998 1.21648 1.21269 1.21190 1.71153 0.98010 1.27068 1.20303 1.21238 0.94613 0.80246 1.06152 1.20235 0.88128 0.99813 1.01117 0.90667 0.91174 0.90813 0.83325 0.81932 0.79033 0.90302 0.87435 0.93009 0.93337 0.92676 0.92821 0.91800 0.90734 0.93561 0.82849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.63 10.02 36.01 0.36 -0.27 16 2 C -0.08 -0.68 5.88 -104.58 -0.62 -1.29 16 3 C -0.14 -1.01 9.67 -39.90 -0.39 -1.39 16 4 C 0.06 0.49 10.93 -16.59 -0.18 0.31 16 5 N -0.37 -4.75 2.93 -62.37 -0.18 -4.93 16 6 C -0.03 -0.43 11.47 -16.21 -0.19 -0.62 16 7 C 0.02 0.44 6.62 -83.44 -0.55 -0.11 16 8 C 0.58 12.05 7.69 -12.44 -0.10 11.95 16 9 O -0.57 -12.27 16.34 5.28 0.09 -12.19 16 10 N -0.57 -12.16 2.29 -171.51 -0.39 -12.56 16 11 C 0.09 2.02 5.41 -2.14 -0.01 2.01 16 12 C 0.17 3.98 3.21 -64.59 -0.21 3.77 16 13 H 0.12 3.04 6.44 -51.93 -0.33 2.71 16 14 C -0.13 -2.75 6.19 -25.54 -0.16 -2.91 16 15 C -0.12 -2.40 6.18 -25.54 -0.16 -2.56 16 16 C 0.13 2.86 4.27 -65.69 -0.28 2.58 16 17 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 18 C 0.10 2.12 5.94 -3.25 -0.02 2.10 16 19 N -0.59 -14.62 2.77 -151.45 -0.42 -15.04 16 20 C -0.23 -6.14 10.37 -15.06 -0.16 -6.29 16 21 H 0.07 1.93 7.84 -52.49 -0.41 1.52 16 22 C 0.00 -0.05 5.42 -17.43 -0.09 -0.14 16 23 N -0.91 -25.45 10.33 55.49 0.57 -24.87 16 24 Si 0.91 21.67 29.56 -169.99 -5.03 16.65 16 25 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 26 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 27 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 28 N -0.44 -8.14 7.80 -9.35 -0.07 -8.22 16 29 C 0.22 3.34 7.79 -156.04 -1.22 2.12 16 30 C -0.07 -0.86 9.75 -39.30 -0.38 -1.24 16 31 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.07 0.30 8.10 -51.93 -0.42 -0.12 16 33 H 0.07 0.42 8.08 -51.93 -0.42 0.00 16 34 H 0.15 0.59 8.06 -52.49 -0.42 0.17 16 35 H 0.16 0.84 8.06 -52.49 -0.42 0.42 16 36 H 0.19 2.30 8.06 -52.49 -0.42 1.87 16 37 H 0.08 2.08 7.71 -51.93 -0.40 1.68 16 38 H 0.11 2.37 4.47 -53.01 -0.24 2.13 16 39 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 40 H 0.05 0.97 7.88 -51.93 -0.41 0.56 16 41 H 0.05 1.05 7.86 -51.93 -0.41 0.64 16 42 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 43 H 0.06 1.41 8.14 -51.93 -0.42 0.99 16 44 H 0.07 1.48 7.08 -51.93 -0.37 1.11 16 45 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 46 H 0.15 1.68 8.06 -52.49 -0.42 1.25 16 LS Contribution 366.87 15.07 5.53 5.53 Total: -1.00 -32.56 366.87 -10.59 -43.16 By element: Atomic # 1 Polarization: 10.81 SS G_CDS: -6.35 Total: 4.46 kcal Atomic # 6 Polarization: 12.35 SS G_CDS: -4.34 Total: 8.01 kcal Atomic # 7 Polarization: -65.13 SS G_CDS: -0.50 Total: -65.62 kcal Atomic # 8 Polarization: -12.27 SS G_CDS: 0.09 Total: -12.19 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.03 Total: 16.65 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -32.56 -10.59 -43.16 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029382504.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.408 kcal (2) G-P(sol) polarization free energy of solvation -32.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.157 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds