Wall clock time and date at job start Tue Mar 31 2020 23:09:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.40567 * 120.13904 * 2 1 4 4 C 1.34854 * 120.34561 * 180.02562 * 3 2 1 5 5 N 1.36679 * 120.63561 * 359.97438 * 4 3 2 6 6 C 1.36201 * 132.29411 * 180.37737 * 5 4 3 7 7 C 1.36577 * 107.09457 * 180.02562 * 6 5 4 8 8 C 1.47593 * 125.91768 * 179.84240 * 7 6 5 9 9 O 1.21592 * 120.00066 * 6.38246 * 8 7 6 10 10 N 1.34777 * 119.99782 * 186.38236 * 8 7 6 11 11 C 1.47154 * 120.70906 * 6.58643 * 10 8 7 12 12 C 1.55891 * 107.95012 * 132.45325 * 11 10 8 13 13 H 1.09002 * 112.45898 * 181.84701 * 12 11 10 14 14 C 1.54552 * 108.44416 * 307.13317 * 12 11 10 15 15 C 1.53726 * 104.95282 * 88.28658 * 14 12 11 16 16 C 1.54543 * 104.95984 * 359.97438 * 15 14 12 17 17 H 1.08994 * 112.18600 * 146.28676 * 16 15 14 18 18 C 1.47159 * 120.70485 * 186.60677 * 10 8 7 19 19 N 1.48312 * 104.35528 * 24.57767 * 16 15 14 20 20 C 1.36932 * 128.07589 * 139.08222 * 19 16 15 21 21 H 1.07996 * 119.99981 * 343.14555 * 20 19 16 22 22 C 1.38809 * 120.00083 * 163.14914 * 20 19 16 23 23 N 1.31621 * 119.99905 * 351.90020 * 22 20 19 24 24 Si 1.86802 * 120.00396 * 171.90623 * 22 20 19 25 25 H 1.48502 * 109.47273 * 179.97438 * 24 22 20 26 26 H 1.48501 * 109.46865 * 299.99848 * 24 22 20 27 27 H 1.48504 * 109.46808 * 59.99486 * 24 22 20 28 28 N 1.34585 * 108.16168 * 359.58480 * 7 6 5 29 29 C 1.32229 * 109.02528 * 0.25641 * 28 7 6 30 30 C 1.35899 * 120.12935 * 180.02562 * 2 1 3 31 31 H 1.09003 * 109.46921 * 269.98018 * 1 2 3 32 32 H 1.09001 * 109.46848 * 29.97382 * 1 2 3 33 33 H 1.08995 * 109.47571 * 149.97254 * 1 2 3 34 34 H 1.08001 * 119.82911 * 0.04877 * 3 2 1 35 35 H 1.07995 * 119.68601 * 180.02562 * 4 3 2 36 36 H 1.08002 * 126.45222 * 359.95273 * 6 5 4 37 37 H 1.08994 * 109.75210 * 252.40815 * 11 10 8 38 38 H 1.09001 * 109.75375 * 13.10058 * 11 10 8 39 39 H 1.08995 * 110.36336 * 207.00685 * 14 12 11 40 40 H 1.08996 * 110.36017 * 329.20750 * 14 12 11 41 41 H 1.09003 * 110.41742 * 241.06715 * 15 14 12 42 42 H 1.09001 * 110.20798 * 118.82498 * 15 14 12 43 43 H 1.09003 * 109.75141 * 107.58914 * 18 10 8 44 44 H 1.08993 * 109.79400 * 346.88065 * 18 10 8 45 45 H 0.96999 * 120.00011 * 179.97438 * 23 22 20 46 46 H 1.08000 * 120.32872 * 359.97438 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2128 1.2156 0.0000 4 6 3.5613 1.2205 -0.0005 5 7 4.2620 0.0470 -0.0005 6 6 5.5969 -0.2234 0.0057 7 6 5.7312 -1.5826 0.0015 8 6 7.0058 -2.3267 0.0024 9 8 8.0582 -1.7298 0.1242 10 7 7.0033 -3.6677 -0.1319 11 6 5.7558 -4.3914 -0.4240 12 6 6.0394 -5.3868 -1.5897 13 1 5.1503 -5.9420 -1.8888 14 6 6.6732 -4.6013 -2.7601 15 6 8.1849 -4.6265 -2.4822 16 6 8.3356 -5.4245 -1.1674 17 1 9.2544 -6.0103 -1.1445 18 6 8.2481 -4.4395 0.0110 19 7 7.1245 -6.2791 -1.1151 20 6 7.0312 -7.5885 -0.7255 21 1 7.9199 -8.1994 -0.6679 22 6 5.7943 -8.1306 -0.4046 23 7 4.7365 -7.3520 -0.3196 24 14 5.6309 -9.9653 -0.0934 25 1 4.2178 -10.2889 0.2287 26 1 6.0458 -10.7122 -1.3080 27 1 6.4994 -10.3531 1.0471 28 7 4.4999 -2.1258 0.0022 29 6 3.6009 -1.1561 0.0011 30 6 2.1891 -1.1754 -0.0005 31 1 -0.3633 -0.0004 1.0277 32 1 -0.3633 0.8902 -0.5134 33 1 -0.3634 -0.8897 -0.5142 34 1 1.6723 2.1507 0.0008 35 1 4.0928 2.1606 -0.0001 36 1 6.3983 0.5006 0.0114 37 1 5.4300 -4.9364 0.4620 38 1 4.9826 -3.6853 -0.7271 39 1 6.4564 -5.0930 -3.7084 40 1 6.3041 -3.5758 -2.7724 41 1 8.5653 -3.6128 -2.3560 42 1 8.7087 -5.1306 -3.2944 43 1 8.2340 -4.9906 0.9514 44 1 9.1045 -3.7656 -0.0080 45 1 3.8721 -7.7309 -0.0957 46 1 1.6566 -2.1150 -0.0005 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001029382504.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:09:25 Heat of formation + Delta-G solvation = 90.089492 kcal Electronic energy + Delta-G solvation = -30290.230078 eV Core-core repulsion = 26374.942969 eV Total energy + Delta-G solvation = -3915.287109 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.90236 -41.39800 -39.40988 -38.44287 -35.57328 -35.07698 -34.20295 -32.29406 -31.63981 -31.06444 -30.81636 -28.40916 -27.56914 -25.97365 -25.36114 -24.54844 -23.50878 -22.70298 -21.32538 -21.08716 -20.25400 -19.18563 -18.35181 -17.76463 -17.36673 -17.28499 -16.81208 -16.68562 -16.31291 -15.83203 -15.63969 -15.41779 -15.10818 -15.00119 -14.63517 -14.49279 -14.30081 -14.20928 -13.56407 -13.40002 -13.31962 -13.20937 -12.97428 -12.88058 -12.73205 -12.59324 -12.55058 -12.43412 -12.02697 -11.90564 -11.59470 -11.58125 -11.46814 -11.29153 -11.14643 -10.90648 -10.38712 -9.93411 -9.65553 -8.84609 -8.63029 -7.81431 -5.18839 -0.31576 0.19342 1.03159 1.48135 1.49271 1.51133 1.57319 2.14220 2.30405 2.52362 2.55797 3.03785 3.36266 3.41020 3.54092 3.73170 3.79971 4.02301 4.08977 4.14880 4.16310 4.21791 4.28772 4.35403 4.45958 4.54167 4.64876 4.71220 4.79567 4.82137 4.85741 4.89427 4.99031 5.02384 5.07600 5.09455 5.18033 5.20685 5.28424 5.35447 5.41705 5.55472 5.57849 5.62170 5.70548 5.84889 6.03421 6.25771 6.51754 6.69007 7.09209 7.17157 7.74423 8.55877 9.29779 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013057 B = 0.003674 C = 0.003056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2143.989203 B = 7618.692352 C = 9159.992598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.047 4.047 3 C -0.128 4.128 4 C 0.050 3.950 5 N -0.367 5.367 6 C -0.012 4.012 7 C -0.022 4.022 8 C 0.587 3.413 9 O -0.580 6.580 10 N -0.576 5.576 11 C 0.113 3.887 12 C 0.166 3.834 13 H 0.080 0.920 14 C -0.123 4.123 15 C -0.110 4.110 16 C 0.130 3.870 17 H 0.089 0.911 18 C 0.105 3.895 19 N -0.605 5.605 20 C -0.240 4.240 21 H 0.076 0.924 22 C -0.052 4.052 23 N -0.932 5.932 24 Si 0.973 3.027 25 H -0.295 1.295 26 H -0.280 1.280 27 H -0.282 1.282 28 N -0.499 5.499 29 C 0.216 3.784 30 C -0.120 4.120 31 H 0.088 0.912 32 H 0.097 0.903 33 H 0.071 0.929 34 H 0.198 0.802 35 H 0.206 0.794 36 H 0.219 0.781 37 H 0.031 0.969 38 H 0.117 0.883 39 H 0.058 0.942 40 H 0.053 0.947 41 H 0.063 0.937 42 H 0.072 0.928 43 H 0.043 0.957 44 H 0.089 0.911 45 H 0.248 0.752 46 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.071 21.821 -1.491 23.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.053 4.053 3 C -0.148 4.148 4 C -0.070 4.070 5 N -0.039 5.039 6 C -0.148 4.148 7 C -0.153 4.153 8 C 0.375 3.625 9 O -0.462 6.462 10 N -0.305 5.305 11 C -0.011 4.011 12 C 0.058 3.942 13 H 0.098 0.902 14 C -0.162 4.162 15 C -0.149 4.149 16 C 0.023 3.977 17 H 0.107 0.893 18 C -0.019 4.019 19 N -0.327 5.327 20 C -0.369 4.369 21 H 0.094 0.906 22 C -0.247 4.247 23 N -0.579 5.579 24 Si 0.802 3.198 25 H -0.221 1.221 26 H -0.206 1.206 27 H -0.208 1.208 28 N -0.221 5.221 29 C -0.029 4.029 30 C -0.141 4.141 31 H 0.106 0.894 32 H 0.116 0.884 33 H 0.090 0.910 34 H 0.215 0.785 35 H 0.223 0.777 36 H 0.235 0.765 37 H 0.049 0.951 38 H 0.134 0.866 39 H 0.077 0.923 40 H 0.072 0.928 41 H 0.082 0.918 42 H 0.090 0.910 43 H 0.061 0.939 44 H 0.107 0.893 45 H 0.057 0.943 46 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -7.765 21.059 -1.345 22.485 hybrid contribution 0.147 -0.878 0.565 1.055 sum -7.618 20.180 -0.780 21.584 Atomic orbital electron populations 1.20896 0.87266 1.04691 1.03975 1.20237 0.98694 0.91406 0.94979 1.21334 0.91733 1.00340 1.01353 1.22524 0.93893 0.88541 1.02006 1.42953 1.06560 1.08526 1.45830 1.22746 0.84626 0.96756 1.10653 1.20553 0.92006 0.92275 1.10460 1.17319 0.86788 0.81719 0.76668 1.90673 1.32197 1.68830 1.54487 1.48039 1.10726 1.05237 1.66526 1.23156 0.84495 0.94917 0.98515 1.22185 0.92748 0.88737 0.90519 0.90167 1.22358 0.96397 0.98856 0.98618 1.22266 0.96007 0.99321 0.97309 1.22137 0.91837 0.90693 0.93041 0.89326 1.22297 0.86359 0.94042 0.99226 1.45373 1.03956 1.08178 1.75212 1.19257 0.94027 0.85462 1.38178 0.90582 1.25594 0.96177 1.01763 1.01182 1.70060 0.99313 1.34468 1.54076 0.85249 0.76118 0.80510 0.77901 1.22138 1.20584 1.20794 1.70869 0.98735 1.29318 1.23191 1.21528 0.95395 0.80614 1.05373 1.20367 0.87037 1.01253 1.05398 0.89359 0.88432 0.91006 0.78538 0.77734 0.76453 0.95099 0.86599 0.92307 0.92849 0.91803 0.90971 0.93899 0.89303 0.94311 0.83553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.88 10.02 71.24 0.71 -0.17 16 2 C -0.05 -0.68 5.88 -19.84 -0.12 -0.79 16 3 C -0.13 -1.24 9.67 22.06 0.21 -1.03 16 4 C 0.05 0.66 10.93 83.16 0.91 1.57 16 5 N -0.37 -8.88 2.93 -351.24 -1.03 -9.91 16 6 C -0.01 -0.34 11.47 83.63 0.96 0.62 16 7 C -0.02 -0.82 6.62 40.80 0.27 -0.55 16 8 C 0.59 24.91 7.69 86.71 0.67 25.58 16 9 O -0.58 -25.31 16.34 -4.00 -0.07 -25.38 16 10 N -0.58 -25.80 2.29 -814.79 -1.86 -27.67 16 11 C 0.11 5.51 5.41 87.26 0.47 5.98 16 12 C 0.17 8.23 3.21 46.18 0.15 8.37 16 13 H 0.08 4.54 6.44 -2.39 -0.02 4.52 16 14 C -0.12 -5.12 6.19 31.37 0.19 -4.93 16 15 C -0.11 -4.22 6.18 31.36 0.19 -4.03 16 16 C 0.13 5.62 4.27 45.45 0.19 5.82 16 17 H 0.09 3.55 8.14 -2.39 -0.02 3.53 16 18 C 0.11 4.56 5.94 86.53 0.51 5.07 16 19 N -0.61 -31.26 2.77 -633.08 -1.76 -33.01 16 20 C -0.24 -13.43 10.37 84.03 0.87 -12.56 16 21 H 0.08 4.10 7.84 -2.91 -0.02 4.07 16 22 C -0.05 -2.95 5.42 84.86 0.46 -2.49 16 23 N -0.93 -55.05 10.33 21.65 0.22 -54.83 16 24 Si 0.97 45.90 29.56 68.60 2.03 47.93 16 25 H -0.30 -14.01 7.11 99.48 0.71 -13.30 16 26 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 27 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 28 N -0.50 -19.36 7.80 -183.48 -1.43 -20.79 16 29 C 0.22 6.61 7.79 134.20 1.05 7.66 16 30 C -0.12 -2.83 9.75 22.45 0.22 -2.61 16 31 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.10 0.31 8.10 -2.39 -0.02 0.29 16 33 H 0.07 0.65 8.08 -2.39 -0.02 0.63 16 34 H 0.20 0.11 8.06 -2.91 -0.02 0.08 16 35 H 0.21 0.92 8.06 -2.91 -0.02 0.89 16 36 H 0.22 4.74 8.06 -2.91 -0.02 4.71 16 37 H 0.03 1.77 7.71 -2.39 -0.02 1.75 16 38 H 0.12 5.52 4.47 -4.52 -0.02 5.50 16 39 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 40 H 0.05 2.15 7.88 -2.39 -0.02 2.13 16 41 H 0.06 2.35 7.86 -2.39 -0.02 2.33 16 42 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 43 H 0.04 2.00 8.14 -2.39 -0.02 1.98 16 44 H 0.09 3.56 7.08 -2.39 -0.02 3.55 16 45 H 0.25 14.35 8.31 -92.71 -0.77 13.58 16 46 H 0.15 3.46 8.06 -2.91 -0.02 3.44 16 Total: -1.00 -76.52 366.87 5.02 -71.49 By element: Atomic # 1 Polarization: 19.67 SS G_CDS: 0.99 Total: 20.66 kcal Atomic # 6 Polarization: 23.58 SS G_CDS: 7.93 Total: 31.51 kcal Atomic # 7 Polarization: -140.35 SS G_CDS: -5.86 Total: -146.21 kcal Atomic # 8 Polarization: -25.31 SS G_CDS: -0.07 Total: -25.38 kcal Atomic # 14 Polarization: 45.90 SS G_CDS: 2.03 Total: 47.93 kcal Total: -76.52 5.02 -71.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029382504.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.584 kcal (2) G-P(sol) polarization free energy of solvation -76.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.494 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds