Wall clock time and date at job start Tue Mar 31 2020 23:41:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35443 * 125.69152 * 2 1 4 4 N 1.36443 * 107.22372 * 179.97438 * 3 2 1 5 5 C 1.36716 * 132.27063 * 179.97438 * 4 3 2 6 6 C 1.34537 * 120.95889 * 180.02562 * 5 4 3 7 7 C 1.41775 * 120.14562 * 0.02580 * 6 5 4 8 8 C 1.47654 * 120.37483 * 180.02562 * 7 6 5 9 9 O 1.21579 * 120.00269 * 211.98952 * 8 7 6 10 10 N 1.34773 * 119.99843 * 31.98836 * 8 7 6 11 11 C 1.47163 * 120.71145 * 5.51977 * 10 8 7 12 12 C 1.55892 * 107.95414 * 132.40732 * 11 10 8 13 13 H 1.08999 * 112.45905 * 181.84473 * 12 11 10 14 14 C 1.54540 * 108.44239 * 307.13942 * 12 11 10 15 15 C 1.53734 * 104.96016 * 88.28472 * 14 12 11 16 16 C 1.54546 * 104.95155 * 359.97438 * 15 14 12 17 17 H 1.08995 * 112.18339 * 146.28348 * 16 15 14 18 18 C 1.47164 * 120.71090 * 185.49622 * 10 8 7 19 19 N 1.48309 * 104.35576 * 24.57748 * 16 15 14 20 20 C 1.36936 * 128.07649 * 139.08360 * 19 16 15 21 21 H 1.08000 * 119.99666 * 344.95428 * 20 19 16 22 22 C 1.38807 * 120.00227 * 164.95314 * 20 19 16 23 23 N 1.31620 * 120.00019 * 349.84797 * 22 20 19 24 24 Si 1.86799 * 120.00056 * 169.85053 * 22 20 19 25 25 H 1.48506 * 109.47066 * 269.99766 * 24 22 20 26 26 H 1.48496 * 109.47367 * 29.99861 * 24 22 20 27 27 H 1.48504 * 109.47198 * 150.00123 * 24 22 20 28 28 C 1.38445 * 119.25407 * 0.27167 * 7 6 5 29 29 C 1.37193 * 106.96574 * 359.97438 * 4 3 2 30 30 N 1.32648 * 108.06282 * 359.97438 * 29 4 3 31 31 H 1.08995 * 109.47190 * 270.00656 * 1 2 3 32 32 H 1.08999 * 109.46570 * 30.00566 * 1 2 3 33 33 H 1.09000 * 109.47044 * 149.99979 * 1 2 3 34 34 H 1.08003 * 126.39263 * 359.97438 * 3 2 1 35 35 H 1.08008 * 119.52127 * 0.02838 * 5 4 3 36 36 H 1.07994 * 119.92996 * 179.97438 * 6 5 4 37 37 H 1.09001 * 109.74978 * 252.36962 * 11 10 8 38 38 H 1.09004 * 109.74823 * 13.09953 * 11 10 8 39 39 H 1.09004 * 110.36506 * 207.00236 * 14 12 11 40 40 H 1.09005 * 110.36633 * 329.20251 * 14 12 11 41 41 H 1.09004 * 110.41739 * 241.06890 * 15 14 12 42 42 H 1.08997 * 110.20657 * 118.82140 * 15 14 12 43 43 H 1.09004 * 109.74581 * 107.62729 * 18 10 8 44 44 H 1.08995 * 109.78687 * 346.92463 * 18 10 8 45 45 H 0.97003 * 120.00098 * 180.02562 * 23 22 20 46 46 H 1.08000 * 120.45266 * 179.72736 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2972 1.1000 0.0000 4 7 3.5914 0.6678 0.0006 5 6 4.7841 1.3361 0.0004 6 6 5.9518 0.6679 0.0006 7 6 5.9609 -0.7498 0.0005 8 6 7.2395 -1.4883 0.0012 9 8 7.3197 -2.5656 -0.5566 10 7 8.3177 -0.9681 0.6203 11 6 8.2091 0.2740 1.4020 12 6 8.9154 0.0428 2.7724 13 1 8.8501 0.9123 3.4264 14 6 8.3272 -1.2330 3.4164 15 6 9.1882 -2.3849 2.8731 16 6 10.2227 -1.7069 1.9466 17 1 11.1851 -2.2182 1.9605 18 6 9.6287 -1.6304 0.5296 19 7 10.3188 -0.3177 2.4571 20 6 11.4421 0.4507 2.6082 21 1 12.4190 -0.0089 2.5766 22 6 11.3254 1.8202 2.8019 23 7 10.1598 2.4104 2.6424 24 14 12.8225 2.8256 3.2888 25 1 12.9249 2.8759 4.7694 26 1 14.0453 2.1957 2.7292 27 1 12.6876 4.2048 2.7549 28 6 4.7573 -1.4341 -0.0056 29 6 3.5554 -0.7036 0.0015 30 7 2.2840 -1.0817 0.0021 31 1 -0.3633 0.0001 1.0276 32 1 -0.3632 0.8900 -0.5139 33 1 -0.3633 -0.8900 -0.5138 34 1 1.9650 2.1277 -0.0004 35 1 4.7890 2.4162 0.0001 36 1 6.8843 1.2126 0.0000 37 1 8.6924 1.0904 0.8653 38 1 7.1588 0.5132 1.5693 39 1 8.4085 -1.1818 4.5022 40 1 7.2860 -1.3618 3.1205 41 1 8.5735 -3.0847 2.3068 42 1 9.6912 -2.8979 3.6927 43 1 10.2895 -1.0521 -0.1162 44 1 9.5072 -2.6357 0.1265 45 1 10.0783 3.3675 2.7774 46 1 4.7417 -2.5140 -0.0103 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001029473013.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:41:39 Heat of formation + Delta-G solvation = 106.596855 kcal Electronic energy + Delta-G solvation = -30255.931430 eV Core-core repulsion = 26341.360134 eV Total energy + Delta-G solvation = -3914.571296 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.90080 -40.26142 -38.15672 -37.04651 -34.00243 -33.60478 -32.58898 -31.83440 -30.57396 -29.38883 -29.31113 -27.79336 -26.27202 -24.37390 -24.02109 -23.16764 -22.89466 -21.01206 -19.96223 -19.66296 -18.74029 -17.89004 -17.77246 -16.68717 -16.10438 -15.78446 -15.44226 -15.37069 -14.79139 -14.67889 -14.44822 -13.96768 -13.82235 -13.59366 -13.37711 -13.17953 -13.05949 -12.83912 -12.69341 -12.37046 -12.04559 -11.86583 -11.81792 -11.70028 -11.40916 -11.17744 -10.99286 -10.86974 -10.78523 -10.44778 -10.20435 -10.13253 -9.92666 -9.71298 -9.66909 -9.56001 -8.90842 -8.68178 -8.22165 -7.88320 -6.93001 -5.95916 -3.29053 0.51630 1.04586 2.50388 2.63321 2.98151 3.29234 3.31071 3.36367 3.36657 3.65906 4.11937 4.32643 4.34136 4.57905 4.65500 4.95280 5.06098 5.08353 5.14527 5.23689 5.30404 5.46380 5.51338 5.60552 5.63059 5.65993 5.72960 5.77485 5.83226 5.88915 5.92706 6.01243 6.07869 6.22988 6.31017 6.33655 6.48188 6.51203 6.51889 6.56194 6.62888 6.81808 6.84269 6.94962 7.12810 7.36113 7.56461 7.76734 7.91122 8.03115 8.49321 8.95803 9.57811 10.34325 11.17939 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.016621 B = 0.003271 C = 0.002937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1684.255644 B = 8557.082721 C = 9531.312216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.054 3.946 3 C -0.097 4.097 4 N -0.351 5.351 5 C 0.042 3.958 6 C -0.113 4.113 7 C -0.104 4.104 8 C 0.554 3.446 9 O -0.553 6.553 10 N -0.581 5.581 11 C 0.091 3.909 12 C 0.169 3.831 13 H 0.120 0.880 14 C -0.135 4.135 15 C -0.124 4.124 16 C 0.134 3.866 17 H 0.079 0.921 18 C 0.103 3.897 19 N -0.585 5.585 20 C -0.223 4.223 21 H 0.077 0.923 22 C -0.003 4.003 23 N -0.916 5.916 24 Si 0.912 3.088 25 H -0.289 1.289 26 H -0.281 1.281 27 H -0.291 1.291 28 C -0.019 4.019 29 C 0.216 3.784 30 N -0.484 5.484 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.074 0.926 34 H 0.182 0.818 35 H 0.169 0.831 36 H 0.169 0.831 37 H 0.088 0.912 38 H 0.069 0.931 39 H 0.055 0.945 40 H 0.049 0.951 41 H 0.056 0.944 42 H 0.055 0.945 43 H 0.066 0.934 44 H 0.078 0.922 45 H 0.254 0.746 46 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.181 -0.564 -3.496 13.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.081 4.081 3 C -0.229 4.229 4 N -0.022 5.022 5 C -0.079 4.079 6 C -0.134 4.134 7 C -0.113 4.113 8 C 0.341 3.659 9 O -0.433 6.433 10 N -0.311 5.311 11 C -0.032 4.032 12 C 0.061 3.939 13 H 0.138 0.862 14 C -0.174 4.174 15 C -0.163 4.163 16 C 0.025 3.975 17 H 0.097 0.903 18 C -0.021 4.021 19 N -0.306 5.306 20 C -0.351 4.351 21 H 0.095 0.905 22 C -0.200 4.200 23 N -0.563 5.563 24 Si 0.743 3.257 25 H -0.216 1.216 26 H -0.207 1.207 27 H -0.217 1.217 28 C -0.040 4.040 29 C -0.026 4.026 30 N -0.205 5.205 31 H 0.092 0.908 32 H 0.091 0.909 33 H 0.093 0.907 34 H 0.199 0.801 35 H 0.186 0.814 36 H 0.186 0.814 37 H 0.106 0.894 38 H 0.087 0.913 39 H 0.073 0.927 40 H 0.068 0.932 41 H 0.075 0.925 42 H 0.074 0.926 43 H 0.084 0.916 44 H 0.096 0.904 45 H 0.064 0.936 46 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -13.253 -1.590 -3.737 13.861 hybrid contribution 1.069 1.678 0.256 2.006 sum -12.184 0.088 -3.481 12.672 Atomic orbital electron populations 1.20122 0.86886 1.03078 1.02717 1.20944 0.96857 0.87971 1.02313 1.22460 0.80860 1.01102 1.18513 1.42792 1.06174 1.08792 1.44462 1.21491 0.82479 0.98825 1.05116 1.21362 0.98466 0.93570 0.99967 1.20022 0.93965 0.93549 1.03781 1.17921 0.83227 0.85044 0.79661 1.90748 1.84540 1.21297 1.46709 1.48083 1.08308 1.26257 1.48453 1.23467 0.99780 0.84803 0.95182 1.22287 0.83492 0.95720 0.92437 0.86226 1.22506 0.97837 0.97355 0.99726 1.22378 0.97724 0.97401 0.98802 1.21973 0.96366 0.88387 0.90732 0.90317 1.22397 0.82770 0.97297 0.99674 1.45199 1.03027 1.10065 1.72284 1.19036 0.84934 0.88329 1.42823 0.90527 1.24791 0.97202 0.96087 1.01898 1.69813 1.22718 1.09615 1.54132 0.86116 0.81880 0.79420 0.78298 1.21593 1.20659 1.21743 1.20559 0.86505 1.00853 0.96082 1.20691 0.94156 0.80385 1.07372 1.70558 0.98073 1.29439 1.22430 0.90810 0.90896 0.90737 0.80078 0.81404 0.81369 0.89421 0.91274 0.92655 0.93182 0.92494 0.92609 0.91582 0.90409 0.93558 0.82316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.58 10.42 36.01 0.38 -0.20 16 2 C 0.05 0.66 7.06 -83.00 -0.59 0.08 16 3 C -0.10 -1.08 11.64 -16.50 -0.19 -1.27 16 4 N -0.35 -4.58 2.94 -62.75 -0.18 -4.76 16 5 C 0.04 0.48 10.91 -16.68 -0.18 0.30 16 6 C -0.11 -1.49 7.35 -39.54 -0.29 -1.78 16 7 C -0.10 -1.60 5.37 -104.63 -0.56 -2.16 16 8 C 0.55 9.87 7.44 -12.42 -0.09 9.78 16 9 O -0.55 -11.19 16.23 5.30 0.09 -11.10 16 10 N -0.58 -10.42 2.29 -171.47 -0.39 -10.82 16 11 C 0.09 1.66 4.14 -2.13 -0.01 1.65 16 12 C 0.17 3.47 3.22 -64.59 -0.21 3.26 16 13 H 0.12 2.79 6.39 -51.93 -0.33 2.46 16 14 C -0.14 -2.46 6.19 -25.54 -0.16 -2.61 16 15 C -0.12 -2.18 6.18 -25.54 -0.16 -2.34 16 16 C 0.13 2.55 4.27 -65.69 -0.28 2.27 16 17 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 18 C 0.10 1.89 5.94 -3.25 -0.02 1.87 16 19 N -0.58 -13.06 2.78 -151.46 -0.42 -13.48 16 20 C -0.22 -5.54 10.36 -15.06 -0.16 -5.70 16 21 H 0.08 1.88 7.85 -52.49 -0.41 1.47 16 22 C 0.00 -0.07 5.41 -17.43 -0.09 -0.17 16 23 N -0.92 -23.10 10.40 55.49 0.58 -22.52 16 24 Si 0.91 20.30 29.57 -169.99 -5.03 15.27 16 25 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 26 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 27 H -0.29 -6.59 7.11 56.52 0.40 -6.18 16 28 C -0.02 -0.29 9.71 -38.60 -0.37 -0.66 16 29 C 0.22 3.28 7.79 -155.97 -1.22 2.06 16 30 N -0.48 -7.46 11.31 -9.02 -0.10 -7.56 16 31 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 33 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.18 1.33 8.06 -52.48 -0.42 0.91 16 35 H 0.17 1.35 8.06 -52.48 -0.42 0.92 16 36 H 0.17 2.18 5.61 -52.49 -0.29 1.89 16 37 H 0.09 1.80 7.43 -51.93 -0.39 1.42 16 38 H 0.07 1.12 4.74 -51.93 -0.25 0.88 16 39 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.05 0.87 7.88 -51.93 -0.41 0.46 16 41 H 0.06 0.98 7.86 -51.93 -0.41 0.58 16 42 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 44 H 0.08 1.39 7.08 -51.93 -0.37 1.02 16 45 H 0.25 6.32 8.31 -40.82 -0.34 5.98 16 46 H 0.16 2.37 7.96 -52.49 -0.42 1.95 16 LS Contribution 364.44 15.07 5.49 5.49 Total: -1.00 -29.63 364.44 -10.39 -40.02 By element: Atomic # 1 Polarization: 11.30 SS G_CDS: -6.21 Total: 5.09 kcal Atomic # 6 Polarization: 8.58 SS G_CDS: -4.20 Total: 4.37 kcal Atomic # 7 Polarization: -58.62 SS G_CDS: -0.52 Total: -59.14 kcal Atomic # 8 Polarization: -11.19 SS G_CDS: 0.09 Total: -11.10 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.03 Total: 15.27 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -29.63 -10.39 -40.02 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029473013.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.614 kcal (2) G-P(sol) polarization free energy of solvation -29.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.017 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds