Wall clock time and date at job start Tue Mar 31 2020 23:41:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35443 * 125.69152 * 2 1 4 4 N 1.36443 * 107.22372 * 179.97438 * 3 2 1 5 5 C 1.36716 * 132.27063 * 179.97438 * 4 3 2 6 6 C 1.34537 * 120.95889 * 180.02562 * 5 4 3 7 7 C 1.41775 * 120.14562 * 0.02580 * 6 5 4 8 8 C 1.47654 * 120.37483 * 180.02562 * 7 6 5 9 9 O 1.21579 * 120.00269 * 211.98952 * 8 7 6 10 10 N 1.34773 * 119.99843 * 31.98836 * 8 7 6 11 11 C 1.47163 * 120.71145 * 5.51977 * 10 8 7 12 12 C 1.55892 * 107.95414 * 132.40732 * 11 10 8 13 13 H 1.08999 * 112.45905 * 181.84473 * 12 11 10 14 14 C 1.54540 * 108.44239 * 307.13942 * 12 11 10 15 15 C 1.53734 * 104.96016 * 88.28472 * 14 12 11 16 16 C 1.54546 * 104.95155 * 359.97438 * 15 14 12 17 17 H 1.08995 * 112.18339 * 146.28348 * 16 15 14 18 18 C 1.47164 * 120.71090 * 185.49622 * 10 8 7 19 19 N 1.48309 * 104.35576 * 24.57748 * 16 15 14 20 20 C 1.36936 * 128.07649 * 139.08360 * 19 16 15 21 21 H 1.08000 * 119.99666 * 344.95428 * 20 19 16 22 22 C 1.38807 * 120.00227 * 164.95314 * 20 19 16 23 23 N 1.31620 * 120.00019 * 349.84797 * 22 20 19 24 24 Si 1.86799 * 120.00056 * 169.85053 * 22 20 19 25 25 H 1.48506 * 109.47066 * 269.99766 * 24 22 20 26 26 H 1.48496 * 109.47367 * 29.99861 * 24 22 20 27 27 H 1.48504 * 109.47198 * 150.00123 * 24 22 20 28 28 C 1.38445 * 119.25407 * 0.27167 * 7 6 5 29 29 C 1.37193 * 106.96574 * 359.97438 * 4 3 2 30 30 N 1.32648 * 108.06282 * 359.97438 * 29 4 3 31 31 H 1.08995 * 109.47190 * 270.00656 * 1 2 3 32 32 H 1.08999 * 109.46570 * 30.00566 * 1 2 3 33 33 H 1.09000 * 109.47044 * 149.99979 * 1 2 3 34 34 H 1.08003 * 126.39263 * 359.97438 * 3 2 1 35 35 H 1.08008 * 119.52127 * 0.02838 * 5 4 3 36 36 H 1.07994 * 119.92996 * 179.97438 * 6 5 4 37 37 H 1.09001 * 109.74978 * 252.36962 * 11 10 8 38 38 H 1.09004 * 109.74823 * 13.09953 * 11 10 8 39 39 H 1.09004 * 110.36506 * 207.00236 * 14 12 11 40 40 H 1.09005 * 110.36633 * 329.20251 * 14 12 11 41 41 H 1.09004 * 110.41739 * 241.06890 * 15 14 12 42 42 H 1.08997 * 110.20657 * 118.82140 * 15 14 12 43 43 H 1.09004 * 109.74581 * 107.62729 * 18 10 8 44 44 H 1.08995 * 109.78687 * 346.92463 * 18 10 8 45 45 H 0.97003 * 120.00098 * 180.02562 * 23 22 20 46 46 H 1.08000 * 120.45266 * 179.72736 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2972 1.1000 0.0000 4 7 3.5914 0.6678 0.0006 5 6 4.7841 1.3361 0.0004 6 6 5.9518 0.6679 0.0006 7 6 5.9609 -0.7498 0.0005 8 6 7.2395 -1.4883 0.0012 9 8 7.3197 -2.5656 -0.5566 10 7 8.3177 -0.9681 0.6203 11 6 8.2091 0.2740 1.4020 12 6 8.9154 0.0428 2.7724 13 1 8.8501 0.9123 3.4264 14 6 8.3272 -1.2330 3.4164 15 6 9.1882 -2.3849 2.8731 16 6 10.2227 -1.7069 1.9466 17 1 11.1851 -2.2182 1.9605 18 6 9.6287 -1.6304 0.5296 19 7 10.3188 -0.3177 2.4571 20 6 11.4421 0.4507 2.6082 21 1 12.4190 -0.0089 2.5766 22 6 11.3254 1.8202 2.8019 23 7 10.1598 2.4104 2.6424 24 14 12.8225 2.8256 3.2888 25 1 12.9249 2.8759 4.7694 26 1 14.0453 2.1957 2.7292 27 1 12.6876 4.2048 2.7549 28 6 4.7573 -1.4341 -0.0056 29 6 3.5554 -0.7036 0.0015 30 7 2.2840 -1.0817 0.0021 31 1 -0.3633 0.0001 1.0276 32 1 -0.3632 0.8900 -0.5139 33 1 -0.3633 -0.8900 -0.5138 34 1 1.9650 2.1277 -0.0004 35 1 4.7890 2.4162 0.0001 36 1 6.8843 1.2126 0.0000 37 1 8.6924 1.0904 0.8653 38 1 7.1588 0.5132 1.5693 39 1 8.4085 -1.1818 4.5022 40 1 7.2860 -1.3618 3.1205 41 1 8.5735 -3.0847 2.3068 42 1 9.6912 -2.8979 3.6927 43 1 10.2895 -1.0521 -0.1162 44 1 9.5072 -2.6357 0.1265 45 1 10.0783 3.3675 2.7774 46 1 4.7417 -2.5140 -0.0103 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001029473013.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:41:38 Heat of formation + Delta-G solvation = 92.298011 kcal Electronic energy + Delta-G solvation = -30256.551475 eV Core-core repulsion = 26341.360134 eV Total energy + Delta-G solvation = -3915.191340 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.88801 -41.71164 -39.59256 -38.19319 -35.51021 -34.78145 -34.23993 -32.82868 -32.01496 -31.05450 -30.37447 -28.84018 -27.69160 -25.82537 -25.55761 -24.38693 -24.02665 -22.06386 -21.41868 -21.08399 -20.28674 -19.11538 -18.86693 -18.16455 -17.22002 -17.17933 -16.85446 -16.71336 -16.44860 -15.75056 -15.58098 -15.43744 -15.22119 -14.87812 -14.68165 -14.40860 -14.11230 -14.00294 -13.84870 -13.55981 -13.38296 -13.28894 -13.14932 -12.92768 -12.84544 -12.71564 -12.56512 -12.34321 -12.06745 -11.97256 -11.83814 -11.49830 -11.43181 -11.22465 -11.14733 -11.05609 -10.61893 -9.79503 -9.69148 -8.89577 -8.66873 -7.83818 -5.16887 -0.57841 0.03768 1.51137 1.54163 1.55727 1.57283 1.59823 1.83907 1.96303 2.47351 2.53466 3.06244 3.35862 3.38194 3.46148 3.51860 3.68988 3.94139 4.05803 4.09471 4.20999 4.24468 4.29940 4.32401 4.33604 4.44371 4.52601 4.62229 4.72804 4.80318 4.85347 4.88766 4.92451 4.96134 4.97344 5.04313 5.05749 5.11514 5.12179 5.29739 5.33780 5.35758 5.55205 5.61133 5.65277 5.80578 6.01221 6.24388 6.46576 6.80136 7.05655 7.10773 7.73879 8.53571 9.28189 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.016621 B = 0.003271 C = 0.002937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1684.255644 B = 8557.082721 C = 9531.312216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.035 3.965 3 C -0.079 4.079 4 N -0.355 5.355 5 C 0.064 3.936 6 C -0.129 4.129 7 C -0.114 4.114 8 C 0.557 3.443 9 O -0.581 6.581 10 N -0.580 5.580 11 C 0.110 3.890 12 C 0.163 3.837 13 H 0.092 0.908 14 C -0.127 4.127 15 C -0.115 4.115 16 C 0.131 3.869 17 H 0.085 0.915 18 C 0.108 3.892 19 N -0.602 5.602 20 C -0.235 4.235 21 H 0.073 0.927 22 C -0.045 4.045 23 N -0.928 5.928 24 Si 0.966 3.034 25 H -0.293 1.293 26 H -0.278 1.278 27 H -0.296 1.296 28 C -0.025 4.025 29 C 0.187 3.813 30 N -0.515 5.515 31 H 0.084 0.916 32 H 0.102 0.898 33 H 0.067 0.933 34 H 0.227 0.773 35 H 0.212 0.788 36 H 0.169 0.831 37 H 0.064 0.936 38 H 0.092 0.908 39 H 0.057 0.943 40 H 0.059 0.941 41 H 0.061 0.939 42 H 0.066 0.934 43 H 0.053 0.947 44 H 0.083 0.917 45 H 0.250 0.750 46 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.995 0.821 -3.456 15.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.099 4.099 3 C -0.211 4.211 4 N -0.027 5.027 5 C -0.056 4.056 6 C -0.150 4.150 7 C -0.123 4.123 8 C 0.346 3.654 9 O -0.463 6.463 10 N -0.310 5.310 11 C -0.014 4.014 12 C 0.056 3.944 13 H 0.110 0.890 14 C -0.166 4.166 15 C -0.154 4.154 16 C 0.023 3.977 17 H 0.103 0.897 18 C -0.016 4.016 19 N -0.324 5.324 20 C -0.364 4.364 21 H 0.091 0.909 22 C -0.240 4.240 23 N -0.575 5.575 24 Si 0.796 3.204 25 H -0.220 1.220 26 H -0.204 1.204 27 H -0.222 1.222 28 C -0.046 4.046 29 C -0.054 4.054 30 N -0.238 5.238 31 H 0.102 0.898 32 H 0.120 0.880 33 H 0.086 0.914 34 H 0.243 0.757 35 H 0.228 0.772 36 H 0.186 0.814 37 H 0.082 0.918 38 H 0.110 0.890 39 H 0.076 0.924 40 H 0.078 0.922 41 H 0.080 0.920 42 H 0.085 0.915 43 H 0.071 0.929 44 H 0.102 0.898 45 H 0.060 0.940 46 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -15.077 -0.226 -3.699 15.526 hybrid contribution 1.494 1.249 0.215 1.959 sum -13.583 1.023 -3.484 14.060 Atomic orbital electron populations 1.20258 0.84285 1.04254 1.03728 1.21719 0.98648 0.87595 1.01930 1.23256 0.79639 1.02749 1.15503 1.43034 1.07313 1.08164 1.44188 1.22039 0.81293 1.00414 1.01888 1.21297 0.99426 0.92411 1.01842 1.19807 0.92497 0.94523 1.05455 1.18252 0.83812 0.84664 0.78664 1.90724 1.85113 1.22653 1.47789 1.48046 1.08283 1.26116 1.48561 1.23169 1.00576 0.84065 0.93571 1.22247 0.83260 0.95658 0.93253 0.89049 1.22421 0.98263 0.96282 0.99683 1.22293 0.97218 0.97070 0.98771 1.22113 0.97275 0.87114 0.91175 0.89718 1.22261 0.82933 0.97381 0.99070 1.45336 1.03130 1.11074 1.72851 1.19228 0.85735 0.88879 1.42543 0.90937 1.25360 0.99188 0.96882 1.02574 1.69937 1.23586 1.09300 1.54686 0.85280 0.79794 0.77886 0.77431 1.22005 1.20363 1.22220 1.20464 0.86948 1.00597 0.96601 1.20642 0.93990 0.81629 1.09139 1.70530 0.98705 1.31418 1.23106 0.89776 0.87963 0.91356 0.75701 0.77181 0.81365 0.91767 0.88991 0.92443 0.92217 0.92023 0.91509 0.92884 0.89830 0.94038 0.83256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.91 10.42 71.24 0.74 -0.17 16 2 C 0.03 0.77 7.06 41.71 0.29 1.06 16 3 C -0.08 -1.46 11.64 83.33 0.97 -0.49 16 4 N -0.36 -8.30 2.94 -352.44 -1.04 -9.33 16 5 C 0.06 1.28 10.91 83.08 0.91 2.18 16 6 C -0.13 -3.23 7.35 22.30 0.16 -3.06 16 7 C -0.11 -3.48 5.37 -19.87 -0.11 -3.59 16 8 C 0.56 19.97 7.44 86.73 0.64 20.61 16 9 O -0.58 -23.85 16.23 -3.96 -0.06 -23.91 16 10 N -0.58 -20.90 2.29 -814.68 -1.86 -22.77 16 11 C 0.11 4.00 4.14 87.25 0.36 4.36 16 12 C 0.16 6.74 3.22 46.17 0.15 6.89 16 13 H 0.09 4.33 6.39 -2.39 -0.02 4.32 16 14 C -0.13 -4.54 6.19 31.37 0.19 -4.35 16 15 C -0.11 -3.93 6.18 31.37 0.19 -3.73 16 16 C 0.13 4.97 4.27 45.45 0.19 5.16 16 17 H 0.08 3.08 8.14 -2.39 -0.02 3.06 16 18 C 0.11 4.00 5.94 86.53 0.51 4.52 16 19 N -0.60 -27.10 2.78 -633.09 -1.76 -28.86 16 20 C -0.24 -11.78 10.36 84.03 0.87 -10.91 16 21 H 0.07 3.60 7.85 -2.91 -0.02 3.57 16 22 C -0.04 -2.26 5.41 84.86 0.46 -1.80 16 23 N -0.93 -47.23 10.40 21.65 0.23 -47.01 16 24 Si 0.97 41.96 29.57 68.60 2.03 43.99 16 25 H -0.29 -12.80 7.11 99.48 0.71 -12.09 16 26 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 27 H -0.30 -12.96 7.11 99.48 0.71 -12.25 16 28 C -0.02 -0.76 9.71 22.91 0.22 -0.54 16 29 C 0.19 5.53 7.79 133.97 1.04 6.57 16 30 N -0.52 -15.45 11.31 -182.46 -2.06 -17.51 16 31 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.23 1.96 8.06 -2.91 -0.02 1.94 16 35 H 0.21 2.33 8.06 -2.91 -0.02 2.31 16 36 H 0.17 4.20 5.61 -2.91 -0.02 4.19 16 37 H 0.06 2.68 7.43 -2.39 -0.02 2.66 16 38 H 0.09 2.94 4.74 -2.38 -0.01 2.92 16 39 H 0.06 2.01 8.14 -2.38 -0.02 1.99 16 40 H 0.06 2.00 7.88 -2.38 -0.02 1.98 16 41 H 0.06 2.06 7.86 -2.38 -0.02 2.05 16 42 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 43 H 0.05 2.09 8.14 -2.38 -0.02 2.07 16 44 H 0.08 3.00 7.08 -2.39 -0.02 2.98 16 45 H 0.25 12.52 8.31 -92.71 -0.77 11.74 16 46 H 0.15 4.69 7.96 -2.91 -0.02 4.66 16 Total: -1.00 -65.19 364.44 4.29 -60.90 By element: Atomic # 1 Polarization: 20.77 SS G_CDS: 1.01 Total: 21.78 kcal Atomic # 6 Polarization: 14.91 SS G_CDS: 7.82 Total: 22.72 kcal Atomic # 7 Polarization: -118.98 SS G_CDS: -6.50 Total: -125.48 kcal Atomic # 8 Polarization: -23.85 SS G_CDS: -0.06 Total: -23.91 kcal Atomic # 14 Polarization: 41.96 SS G_CDS: 2.03 Total: 43.99 kcal Total: -65.19 4.29 -60.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029473013.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.195 kcal (2) G-P(sol) polarization free energy of solvation -65.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.897 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds