Wall clock time and date at job start Tue Mar 31 2020 23:13:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46504 * 109.45984 * 2 1 4 4 C 1.34782 * 119.99929 * 60.02341 * 3 2 1 5 5 O 1.21491 * 119.99869 * 0.02562 * 4 3 2 6 6 C 1.48344 * 119.99768 * 180.02562 * 4 3 2 7 7 C 1.40177 * 119.20444 * 179.97438 * 6 4 3 8 8 C 1.36621 * 119.70743 * 180.02562 * 7 6 4 9 9 C 1.40588 * 118.21170 * 359.97438 * 8 7 6 10 10 C 1.40736 * 121.37596 * 179.72108 * 9 8 7 11 11 C 1.36581 * 118.13137 * 179.76127 * 10 9 8 12 12 C 1.39432 * 119.84660 * 0.54592 * 11 10 9 13 13 N 1.31009 * 121.83950 * 359.69311 * 12 11 10 14 14 C 1.33861 * 121.43021 * 0.02562 * 13 12 11 15 15 N 1.31879 * 119.20837 * 0.02562 * 6 4 3 16 16 C 1.53046 * 109.44991 * 119.96317 * 2 1 3 17 17 C 1.53191 * 109.30950 * 181.38284 * 16 2 1 18 18 N 1.46927 * 108.77586 * 305.36167 * 17 16 2 19 19 C 1.36939 * 120.63142 * 233.63619 * 18 17 16 20 20 H 1.07997 * 120.00021 * 27.66040 * 19 18 17 21 21 C 1.38814 * 119.99819 * 207.66157 * 19 18 17 22 22 N 1.31629 * 119.99782 * 17.37257 * 21 19 18 23 23 Si 1.86791 * 120.00020 * 197.37126 * 21 19 18 24 24 H 1.48502 * 109.47483 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.47167 * 120.00110 * 23 21 19 26 26 H 1.48508 * 109.47311 * 240.00018 * 23 21 19 27 27 C 1.46919 * 118.73595 * 53.61296 * 18 17 16 28 28 C 1.53041 * 109.46296 * 240.02735 * 2 1 3 29 29 H 1.08994 * 109.47600 * 60.00243 * 1 2 3 30 30 H 1.09004 * 109.46962 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47094 * 299.99843 * 1 2 3 32 32 H 0.96997 * 120.00008 * 240.03158 * 3 2 1 33 33 H 1.08000 * 120.14336 * 0.02562 * 7 6 4 34 34 H 1.07998 * 120.88932 * 180.02562 * 8 7 6 35 35 H 1.08000 * 120.93176 * 0.26086 * 10 9 8 36 36 H 1.08000 * 120.07642 * 180.23406 * 11 10 9 37 37 H 1.08006 * 119.08137 * 179.71126 * 12 11 10 38 38 H 1.09003 * 109.49481 * 301.33197 * 16 2 1 39 39 H 1.08997 * 109.49615 * 61.42818 * 16 2 1 40 40 H 1.09007 * 109.58180 * 185.57851 * 17 16 2 41 41 H 1.08994 * 109.59202 * 65.15490 * 17 16 2 42 42 H 0.96997 * 119.99235 * 179.97438 * 22 21 19 43 43 H 1.09001 * 109.58816 * 186.59786 * 27 18 17 44 44 H 1.09000 * 109.70539 * 66.25239 * 27 18 17 45 45 H 1.09003 * 109.49346 * 298.57995 * 28 2 1 46 46 H 1.09001 * 109.49560 * 58.63876 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0180 1.3813 0.0000 4 6 1.6926 2.2110 1.0111 5 8 0.9950 1.8133 1.9227 6 6 2.1864 3.6099 1.0108 7 6 1.8374 4.4586 2.0704 8 6 2.2860 5.7491 2.0802 9 6 3.0919 6.1806 1.0122 10 6 3.5854 7.4973 0.9521 11 6 4.3665 7.8442 -0.1133 12 6 4.6428 6.9051 -1.1062 13 7 4.1774 5.6818 -1.0492 14 6 3.4106 5.2734 -0.0308 15 7 2.9422 4.0253 0.0131 16 6 2.0396 -0.7208 1.2502 17 6 3.5711 -0.6887 1.2645 18 7 4.0676 -1.2492 0.0004 19 6 4.9753 -2.2745 0.0006 20 1 5.0080 -2.9667 0.8289 21 6 5.8535 -2.4242 -1.0640 22 7 6.0602 -1.4224 -1.8924 23 14 6.7420 -4.0471 -1.3208 24 1 6.3386 -5.0055 -0.2605 25 1 6.3844 -4.6021 -2.6510 26 1 8.2088 -3.8243 -1.2554 27 6 3.5714 -0.6890 -1.2639 28 6 2.0399 -0.7209 -1.2500 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 2.5752 1.6988 -0.7277 33 1 1.2166 4.0941 2.8754 34 1 2.0291 6.4192 2.8872 35 1 3.3597 8.2108 1.7307 36 1 4.7650 8.8452 -0.1890 37 1 5.2580 7.1941 -1.9456 38 1 1.6569 -0.2205 2.1399 39 1 1.6973 -1.7555 1.2385 40 1 3.9412 -1.2847 2.0988 41 1 3.9142 0.3407 1.3676 42 1 6.6742 -1.5269 -2.6361 43 1 3.9417 -1.2849 -2.0980 44 1 3.9145 0.3402 -1.3696 45 1 1.6976 -1.7557 -1.2382 46 1 1.6569 -0.2212 -2.1398 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001045444608.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:13:12 Heat of formation + Delta-G solvation = 65.365473 kcal Electronic energy + Delta-G solvation = -29793.482470 eV Core-core repulsion = 25877.123247 eV Total energy + Delta-G solvation = -3916.359223 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.46458 -40.08063 -38.13988 -37.01212 -34.52082 -34.25427 -32.18910 -31.30374 -31.16036 -30.43434 -29.82613 -27.37052 -25.88496 -24.50520 -23.99788 -22.85826 -22.26497 -21.71655 -20.56062 -19.04195 -18.63580 -18.12684 -17.39365 -16.77293 -16.25122 -15.47064 -15.30139 -14.81782 -14.70348 -14.54265 -14.44765 -14.29303 -13.81977 -13.52656 -13.38594 -13.32478 -13.17228 -13.02751 -12.48345 -12.22697 -12.15917 -11.77347 -11.59073 -11.36505 -11.25486 -11.15198 -10.89698 -10.82765 -10.68447 -10.28812 -10.23312 -9.92406 -9.81614 -9.58179 -9.35603 -9.19675 -9.14916 -9.07901 -8.59907 -8.39770 -6.59327 -5.72424 -3.13938 -0.15583 0.26613 1.62718 2.23257 3.16515 3.23861 3.40889 3.48827 3.51299 3.55206 3.97657 4.11464 4.33216 4.37640 4.48611 4.55159 4.64135 4.80331 5.03137 5.06556 5.32204 5.38189 5.41850 5.47293 5.54942 5.58427 5.61030 5.67188 5.83562 5.91859 6.03565 6.10024 6.24204 6.31572 6.35149 6.39791 6.44621 6.60898 6.69356 6.75702 6.86975 7.00378 7.08518 7.13113 7.38037 7.69079 7.80950 7.86087 7.98229 8.44257 8.51268 9.27720 9.91539 10.48882 11.35889 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012282 B = 0.003384 C = 0.002866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2279.129424 B = 8272.959006 C = 9766.515419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.180 3.820 3 N -0.681 5.681 4 C 0.567 3.433 5 O -0.532 6.532 6 C 0.151 3.849 7 C -0.129 4.129 8 C -0.051 4.051 9 C -0.145 4.145 10 C -0.048 4.048 11 C -0.175 4.175 12 C 0.157 3.843 13 N -0.454 5.454 14 C 0.303 3.697 15 N -0.430 5.430 16 C -0.143 4.143 17 C 0.150 3.850 18 N -0.590 5.590 19 C -0.250 4.250 20 H 0.065 0.935 21 C 0.001 3.999 22 N -0.901 5.901 23 Si 0.900 3.100 24 H -0.278 1.278 25 H -0.289 1.289 26 H -0.291 1.291 27 C 0.170 3.830 28 C -0.145 4.145 29 H 0.049 0.951 30 H 0.061 0.939 31 H 0.072 0.928 32 H 0.413 0.587 33 H 0.157 0.843 34 H 0.148 0.852 35 H 0.143 0.857 36 H 0.144 0.856 37 H 0.169 0.831 38 H 0.073 0.927 39 H 0.065 0.935 40 H 0.051 0.949 41 H 0.014 0.986 42 H 0.252 0.748 43 H 0.090 0.910 44 H 0.019 0.981 45 H 0.073 0.927 46 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.960 19.730 4.925 22.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.095 3.905 3 N -0.331 5.331 4 C 0.350 3.650 5 O -0.409 6.409 6 C -0.007 4.007 7 C -0.149 4.149 8 C -0.077 4.077 9 C -0.150 4.150 10 C -0.075 4.075 11 C -0.195 4.195 12 C -0.021 4.021 13 N -0.162 5.162 14 C 0.065 3.935 15 N -0.142 5.142 16 C -0.182 4.182 17 C 0.023 3.977 18 N -0.313 5.313 19 C -0.379 4.379 20 H 0.083 0.917 21 C -0.197 4.197 22 N -0.546 5.546 23 Si 0.730 3.270 24 H -0.203 1.203 25 H -0.216 1.216 26 H -0.218 1.218 27 C 0.044 3.956 28 C -0.185 4.185 29 H 0.068 0.932 30 H 0.080 0.920 31 H 0.091 0.909 32 H 0.251 0.749 33 H 0.174 0.826 34 H 0.166 0.834 35 H 0.161 0.839 36 H 0.162 0.838 37 H 0.186 0.814 38 H 0.091 0.909 39 H 0.084 0.916 40 H 0.069 0.931 41 H 0.031 0.969 42 H 0.062 0.938 43 H 0.108 0.892 44 H 0.037 0.963 45 H 0.091 0.909 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -8.939 18.142 4.058 20.628 hybrid contribution 0.558 0.649 0.688 1.098 sum -8.380 18.792 4.746 21.116 Atomic orbital electron populations 1.22228 0.95191 1.02071 1.02384 1.20400 0.92762 0.79704 0.97602 1.46102 1.51061 1.11691 1.24266 1.17771 0.80710 0.83549 0.82937 1.90700 1.38491 1.75674 1.36031 1.21680 0.93087 0.95572 0.90354 1.21862 1.00241 0.93452 0.99395 1.21432 0.93841 0.95900 0.96564 1.19739 1.01186 0.96378 0.97724 1.21474 0.94057 0.94112 0.97809 1.22059 1.00020 1.01815 0.95583 1.23174 0.94192 0.87346 0.97339 1.67674 1.08466 1.17152 1.22909 1.19238 0.94784 0.89311 0.90203 1.67439 1.07785 1.14786 1.24207 1.22406 0.99069 0.99729 0.97034 1.20834 0.90840 0.96084 0.89927 1.44042 1.48288 1.39590 0.99407 1.19232 1.09793 1.02851 1.06073 0.91708 1.25027 0.97258 0.97392 1.00052 1.70054 1.37714 1.28872 1.17953 0.86253 0.79151 0.83847 0.77714 1.20318 1.21613 1.21835 1.20755 0.86756 0.97374 0.90679 1.22524 1.01576 0.99932 0.94475 0.93227 0.91998 0.90896 0.74898 0.82575 0.83385 0.83909 0.83844 0.81422 0.90864 0.91595 0.93084 0.96854 0.93751 0.89219 0.96291 0.90873 0.92621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.49 8.40 37.15 0.31 -2.18 16 2 C 0.18 3.21 0.66 -131.77 -0.09 3.12 16 3 N -0.68 -12.07 4.09 -48.34 -0.20 -12.27 16 4 C 0.57 9.66 7.23 -12.10 -0.09 9.58 16 5 O -0.53 -9.49 12.49 5.37 0.07 -9.43 16 6 C 0.15 2.32 6.75 -82.96 -0.56 1.76 16 7 C -0.13 -1.53 9.54 -39.44 -0.38 -1.91 16 8 C -0.05 -0.48 9.89 -39.28 -0.39 -0.87 16 9 C -0.15 -1.62 5.75 -106.68 -0.61 -2.23 16 10 C -0.05 -0.36 9.90 -39.24 -0.39 -0.75 16 11 C -0.17 -1.21 10.04 -39.74 -0.40 -1.61 16 12 C 0.16 1.50 11.14 -17.46 -0.19 1.30 16 13 N -0.45 -6.58 10.43 -12.59 -0.13 -6.72 16 14 C 0.30 4.54 7.62 -157.91 -1.20 3.34 16 15 N -0.43 -7.19 9.56 -9.19 -0.09 -7.28 16 16 C -0.14 -2.74 4.67 -26.61 -0.12 -2.86 16 17 C 0.15 3.37 6.26 -3.71 -0.02 3.35 16 18 N -0.59 -15.13 2.99 -172.32 -0.52 -15.64 16 19 C -0.25 -7.00 9.59 -15.06 -0.14 -7.15 16 20 H 0.07 1.80 7.89 -52.49 -0.41 1.39 16 21 C 0.00 0.03 4.91 -17.43 -0.09 -0.06 16 22 N -0.90 -26.56 11.19 55.49 0.62 -25.94 16 23 Si 0.90 22.06 29.59 -169.99 -5.03 17.03 16 24 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 25 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 26 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 27 C 0.17 4.08 5.03 -3.72 -0.02 4.06 16 28 C -0.15 -2.78 4.96 -26.61 -0.13 -2.91 16 29 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 30 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 31 H 0.07 1.18 6.17 -51.93 -0.32 0.86 16 32 H 0.41 7.67 6.57 -40.82 -0.27 7.40 16 33 H 0.16 1.63 7.60 -52.49 -0.40 1.23 16 34 H 0.15 0.80 8.06 -52.49 -0.42 0.38 16 35 H 0.14 0.58 8.06 -52.49 -0.42 0.16 16 36 H 0.14 0.48 8.06 -52.49 -0.42 0.05 16 37 H 0.17 1.03 8.06 -52.48 -0.42 0.61 16 38 H 0.07 1.39 6.20 -51.93 -0.32 1.07 16 39 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 40 H 0.05 1.14 7.93 -51.93 -0.41 0.73 16 41 H 0.01 0.32 7.74 -51.93 -0.40 -0.08 16 42 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 43 H 0.09 2.40 6.03 -51.93 -0.31 2.09 16 44 H 0.02 0.48 6.94 -51.93 -0.36 0.12 16 45 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 46 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 LS Contribution 368.30 15.07 5.55 5.55 Total: -1.00 -34.12 368.30 -10.39 -44.51 By element: Atomic # 1 Polarization: 12.36 SS G_CDS: -6.15 Total: 6.21 kcal Atomic # 6 Polarization: 8.49 SS G_CDS: -4.51 Total: 3.98 kcal Atomic # 7 Polarization: -67.53 SS G_CDS: -0.31 Total: -67.85 kcal Atomic # 8 Polarization: -9.49 SS G_CDS: 0.07 Total: -9.43 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.03 Total: 17.03 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -34.12 -10.39 -44.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045444608.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.873 kcal (2) G-P(sol) polarization free energy of solvation -34.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.507 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds