Wall clock time and date at job start Tue Mar 31 2020 23:12:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46494 * 109.46169 * 2 1 4 4 C 1.34781 * 119.99835 * 60.03342 * 3 2 1 5 5 O 1.21546 * 119.99622 * 359.71852 * 4 3 2 6 6 C 1.47894 * 120.00017 * 179.97438 * 4 3 2 7 7 N 1.32137 * 120.03142 * 359.97438 * 6 4 3 8 8 C 1.31985 * 122.76705 * 179.97438 * 7 6 4 9 9 C 1.37775 * 121.72770 * 0.02562 * 8 7 6 10 10 C 1.40392 * 118.73135 * 359.97438 * 9 8 7 11 11 C 1.40644 * 122.28498 * 180.02562 * 10 9 8 12 12 C 1.36640 * 117.95154 * 179.97438 * 11 10 9 13 13 C 1.39398 * 119.92558 * 0.02562 * 12 11 10 14 14 N 1.31204 * 121.85387 * 0.02562 * 13 12 11 15 15 C 1.33252 * 121.22222 * 359.72567 * 14 13 12 16 16 C 1.53039 * 109.44846 * 119.96916 * 2 1 3 17 17 C 1.53197 * 109.31290 * 181.37644 * 16 2 1 18 18 N 1.46928 * 108.77406 * 305.36563 * 17 16 2 19 19 C 1.36942 * 120.62637 * 233.63061 * 18 17 16 20 20 H 1.07998 * 120.00290 * 27.66378 * 19 18 17 21 21 C 1.38817 * 119.99379 * 207.66512 * 19 18 17 22 22 N 1.31620 * 120.00235 * 17.36228 * 21 19 18 23 23 Si 1.86805 * 119.99764 * 197.35917 * 21 19 18 24 24 H 1.48500 * 109.46814 * 60.00004 * 23 21 19 25 25 H 1.48499 * 109.47052 * 180.02562 * 23 21 19 26 26 H 1.48501 * 109.46991 * 300.00513 * 23 21 19 27 27 C 1.46921 * 118.73953 * 53.60529 * 18 17 16 28 28 C 1.53048 * 109.45911 * 240.02800 * 2 1 3 29 29 H 1.08993 * 109.47010 * 60.00087 * 1 2 3 30 30 H 1.09001 * 109.47052 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46561 * 299.99601 * 1 2 3 32 32 H 0.97003 * 120.00314 * 240.02713 * 3 2 1 33 33 H 1.07996 * 119.13291 * 180.02562 * 8 7 6 34 34 H 1.08000 * 120.63387 * 179.97438 * 9 8 7 35 35 H 1.07998 * 121.02560 * 359.95283 * 11 10 9 36 36 H 1.07998 * 120.03430 * 180.02562 * 12 11 10 37 37 H 1.08000 * 119.07234 * 179.97438 * 13 12 11 38 38 H 1.09002 * 109.49850 * 301.32827 * 16 2 1 39 39 H 1.09007 * 109.49665 * 61.42604 * 16 2 1 40 40 H 1.09006 * 109.58466 * 185.57903 * 17 16 2 41 41 H 1.09000 * 109.58506 * 65.15043 * 17 16 2 42 42 H 0.96997 * 119.99571 * 179.97438 * 22 21 19 43 43 H 1.09003 * 109.58599 * 186.60065 * 27 18 17 44 44 H 1.09007 * 109.69983 * 66.25150 * 27 18 17 45 45 H 1.09001 * 109.49615 * 298.58156 * 28 2 1 46 46 H 1.08999 * 109.49364 * 58.64156 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0181 1.3812 0.0000 4 6 1.6929 2.2109 1.0112 5 8 0.9905 1.8144 1.9205 6 6 2.1861 3.6051 1.0115 7 7 2.9460 4.0380 0.0210 8 6 3.4150 5.2706 -0.0335 9 6 3.1393 6.1948 0.9504 10 6 2.3373 5.8067 2.0353 11 6 2.0088 6.6890 3.0802 12 6 1.2213 6.2178 4.0926 13 6 0.7709 4.8989 4.0670 14 7 1.0815 4.0800 3.0900 15 6 1.8415 4.4779 2.0704 16 6 2.0396 -0.7209 1.2501 17 6 3.5712 -0.6890 1.2645 18 7 4.0676 -1.2494 0.0002 19 6 4.9753 -2.2748 0.0004 20 1 5.0078 -2.9671 0.8287 21 6 5.8535 -2.4244 -1.0642 22 7 6.0601 -1.4227 -1.8927 23 14 6.7422 -4.0473 -1.3210 24 1 5.7464 -5.1304 -1.5224 25 1 7.6164 -3.9491 -2.5173 26 1 7.5705 -4.3524 -0.1268 27 6 3.5713 -0.6891 -1.2640 28 6 2.0399 -0.7209 -1.2501 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3632 0.5138 0.8901 32 1 2.5754 1.6988 -0.7277 33 1 4.0309 5.5622 -0.8713 34 1 3.5327 7.1987 0.8882 35 1 2.3682 7.7074 3.0825 36 1 0.9481 6.8666 4.9116 37 1 0.1496 4.5407 4.8745 38 1 1.6570 -0.2207 2.1399 39 1 1.6973 -1.7557 1.2383 40 1 3.9412 -1.2851 2.0987 41 1 3.9143 0.3404 1.3676 42 1 6.6741 -1.5271 -2.6363 43 1 3.9417 -1.2851 -2.0982 44 1 3.9145 0.3401 -1.3696 45 1 1.6976 -1.7557 -1.2383 46 1 1.6569 -0.2212 -2.1398 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001045464887.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:12:58 Heat of formation + Delta-G solvation = 67.018022 kcal Electronic energy + Delta-G solvation = -30089.206236 eV Core-core repulsion = 26172.918673 eV Total energy + Delta-G solvation = -3916.287563 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.45675 -39.77793 -38.19282 -37.12063 -34.31121 -33.87751 -32.10690 -31.56380 -30.97581 -30.14673 -29.75795 -27.32069 -25.61623 -24.30836 -24.05093 -23.59835 -22.18360 -21.22641 -20.41279 -19.01901 -18.39376 -17.79334 -17.62824 -16.73787 -16.30896 -15.34559 -15.17884 -14.78641 -14.60537 -14.53388 -14.30823 -14.13836 -13.74328 -13.39545 -13.35537 -13.22045 -13.07522 -12.97278 -12.74680 -12.42809 -12.26943 -11.67844 -11.53403 -11.23798 -11.13497 -10.95644 -10.84210 -10.64662 -10.30831 -10.21948 -10.06295 -9.94636 -9.78815 -9.57748 -9.55092 -9.43818 -8.92697 -8.66570 -8.44620 -8.34624 -6.57713 -5.72156 -3.12912 -0.22959 0.47347 1.47346 2.61957 3.28653 3.35802 3.42788 3.47925 3.49912 3.97723 4.03847 4.11513 4.25092 4.39386 4.51436 4.54801 4.56311 4.90388 5.09667 5.17804 5.30103 5.37137 5.41668 5.47492 5.56146 5.62619 5.66055 5.72289 5.81736 6.05692 6.12941 6.16545 6.30224 6.33904 6.42724 6.44846 6.52860 6.64270 6.79522 6.82881 6.93255 7.08304 7.20549 7.39980 7.49655 7.69294 7.72807 7.85692 8.10299 8.52235 8.67389 9.28827 9.92774 10.50404 11.36239 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.016654 B = 0.003156 C = 0.002951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1680.852749 B = 8871.063015 C = 9486.298019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.184 3.816 3 N -0.690 5.690 4 C 0.564 3.436 5 O -0.498 6.498 6 C 0.149 3.851 7 N -0.440 5.440 8 C 0.080 3.920 9 C -0.130 4.130 10 C -0.084 4.084 11 C -0.066 4.066 12 C -0.157 4.157 13 C 0.127 3.873 14 N -0.416 5.416 15 C 0.104 3.896 16 C -0.143 4.143 17 C 0.151 3.849 18 N -0.591 5.591 19 C -0.249 4.249 20 H 0.064 0.936 21 C 0.001 3.999 22 N -0.903 5.903 23 Si 0.901 3.099 24 H -0.284 1.284 25 H -0.291 1.291 26 H -0.284 1.284 27 C 0.172 3.828 28 C -0.145 4.145 29 H 0.047 0.953 30 H 0.059 0.941 31 H 0.073 0.927 32 H 0.409 0.591 33 H 0.167 0.833 34 H 0.145 0.855 35 H 0.144 0.856 36 H 0.142 0.858 37 H 0.164 0.836 38 H 0.074 0.926 39 H 0.063 0.937 40 H 0.049 0.951 41 H 0.014 0.986 42 H 0.253 0.747 43 H 0.089 0.911 44 H 0.018 0.982 45 H 0.071 0.929 46 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.378 18.780 6.699 22.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.099 3.901 3 N -0.342 5.342 4 C 0.347 3.653 5 O -0.372 6.372 6 C -0.004 4.004 7 N -0.153 5.153 8 C -0.066 4.066 9 C -0.151 4.151 10 C -0.091 4.091 11 C -0.092 4.092 12 C -0.178 4.178 13 C -0.047 4.047 14 N -0.123 5.123 15 C -0.021 4.021 16 C -0.182 4.182 17 C 0.025 3.975 18 N -0.313 5.313 19 C -0.379 4.379 20 H 0.082 0.918 21 C -0.197 4.197 22 N -0.548 5.548 23 Si 0.731 3.269 24 H -0.211 1.211 25 H -0.217 1.217 26 H -0.210 1.210 27 C 0.046 3.954 28 C -0.185 4.185 29 H 0.066 0.934 30 H 0.078 0.922 31 H 0.092 0.908 32 H 0.245 0.755 33 H 0.184 0.816 34 H 0.163 0.837 35 H 0.161 0.839 36 H 0.159 0.841 37 H 0.181 0.819 38 H 0.092 0.908 39 H 0.082 0.918 40 H 0.068 0.932 41 H 0.032 0.968 42 H 0.063 0.937 43 H 0.107 0.893 44 H 0.036 0.964 45 H 0.090 0.910 46 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -10.740 17.037 6.371 21.123 hybrid contribution 1.070 1.030 0.089 1.488 sum -9.670 18.067 6.460 21.487 Atomic orbital electron populations 1.22226 0.95378 1.01858 1.02389 1.20312 0.92634 0.79882 0.97300 1.46036 1.52098 1.11628 1.24473 1.17501 0.81387 0.83264 0.83172 1.90771 1.36305 1.74928 1.35157 1.21766 0.94059 0.95213 0.89379 1.67430 1.06928 1.17301 1.23619 1.22641 0.97565 0.87884 0.98519 1.22364 0.97629 1.01407 0.93672 1.18978 0.98763 0.94696 0.96696 1.21397 0.95980 0.99411 0.92375 1.22108 0.98396 0.97679 0.99618 1.23322 0.95721 0.89628 0.96038 1.68316 1.09322 1.34883 0.99786 1.19502 0.96373 0.91343 0.94838 1.22396 0.98935 0.99621 0.97293 1.20826 0.90940 0.96031 0.89752 1.44032 1.48260 1.39575 0.99468 1.19167 1.09769 1.02895 1.06054 0.91822 1.25007 0.97265 0.97379 1.00067 1.70024 1.37814 1.28967 1.18004 0.86388 0.79236 0.84022 0.77240 1.21099 1.21720 1.21012 1.20741 0.86822 0.97232 0.90636 1.22516 1.01486 0.99895 0.94571 0.93388 0.92208 0.90804 0.75466 0.81609 0.83724 0.83862 0.84059 0.81870 0.90791 0.91787 0.93212 0.96823 0.93715 0.89320 0.96396 0.91008 0.92729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.60 8.40 37.16 0.31 -2.29 16 2 C 0.18 3.35 0.66 -131.78 -0.09 3.27 16 3 N -0.69 -12.43 4.09 -48.48 -0.20 -12.63 16 4 C 0.56 10.32 7.23 -12.31 -0.09 10.23 16 5 O -0.50 -9.86 11.42 5.33 0.06 -9.80 16 6 C 0.15 2.46 6.81 -82.55 -0.56 1.89 16 7 N -0.44 -6.58 9.48 -9.55 -0.09 -6.67 16 8 C 0.08 0.89 11.12 -17.65 -0.20 0.70 16 9 C -0.13 -1.22 9.93 -38.94 -0.39 -1.60 16 10 C -0.08 -0.95 5.75 -106.79 -0.61 -1.56 16 11 C -0.07 -0.53 9.94 -39.25 -0.39 -0.92 16 12 C -0.16 -1.18 10.03 -39.73 -0.40 -1.58 16 13 C 0.13 1.31 11.14 -17.39 -0.19 1.12 16 14 N -0.42 -6.21 8.49 -10.75 -0.09 -6.31 16 15 C 0.10 1.56 6.61 -84.63 -0.56 1.00 16 16 C -0.14 -2.83 4.67 -26.61 -0.12 -2.96 16 17 C 0.15 3.46 6.26 -3.71 -0.02 3.44 16 18 N -0.59 -15.15 2.99 -172.31 -0.52 -15.66 16 19 C -0.25 -6.99 9.59 -15.06 -0.14 -7.13 16 20 H 0.06 1.77 7.89 -52.49 -0.41 1.35 16 21 C 0.00 0.03 4.91 -17.43 -0.09 -0.06 16 22 N -0.90 -26.28 11.19 55.49 0.62 -25.66 16 23 Si 0.90 21.99 29.59 -169.99 -5.03 16.96 16 24 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 25 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 26 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 27 C 0.17 4.07 5.03 -3.72 -0.02 4.05 16 28 C -0.15 -2.78 4.96 -26.61 -0.13 -2.91 16 29 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 31 H 0.07 1.28 6.16 -51.93 -0.32 0.96 16 32 H 0.41 7.37 6.61 -40.82 -0.27 7.10 16 33 H 0.17 1.34 8.06 -52.49 -0.42 0.91 16 34 H 0.15 0.79 8.06 -52.49 -0.42 0.37 16 35 H 0.14 0.65 8.06 -52.49 -0.42 0.23 16 36 H 0.14 0.55 8.06 -52.49 -0.42 0.13 16 37 H 0.16 1.20 8.06 -52.49 -0.42 0.78 16 38 H 0.07 1.49 6.21 -51.93 -0.32 1.17 16 39 H 0.06 1.26 8.14 -51.92 -0.42 0.84 16 40 H 0.05 1.14 7.93 -51.93 -0.41 0.73 16 41 H 0.01 0.33 7.74 -51.93 -0.40 -0.07 16 42 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 43 H 0.09 2.35 6.03 -51.93 -0.31 2.04 16 44 H 0.02 0.44 6.94 -51.92 -0.36 0.08 16 45 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 46 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 366.44 15.07 5.52 5.52 Total: -1.00 -33.98 366.44 -9.59 -43.57 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: -6.18 Total: 5.99 kcal Atomic # 6 Polarization: 8.37 SS G_CDS: -3.69 Total: 4.68 kcal Atomic # 7 Polarization: -66.65 SS G_CDS: -0.28 Total: -66.93 kcal Atomic # 8 Polarization: -9.86 SS G_CDS: 0.06 Total: -9.80 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.03 Total: 16.96 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -33.98 -9.59 -43.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045464887.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.589 kcal (2) G-P(sol) polarization free energy of solvation -33.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.571 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds