Wall clock time and date at job start Tue Mar 31 2020 23:12:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46494 * 109.46169 * 2 1 4 4 C 1.34781 * 119.99835 * 60.03342 * 3 2 1 5 5 O 1.21546 * 119.99622 * 359.71852 * 4 3 2 6 6 C 1.47894 * 120.00017 * 179.97438 * 4 3 2 7 7 N 1.32137 * 120.03142 * 359.97438 * 6 4 3 8 8 C 1.31985 * 122.76705 * 179.97438 * 7 6 4 9 9 C 1.37775 * 121.72770 * 0.02562 * 8 7 6 10 10 C 1.40392 * 118.73135 * 359.97438 * 9 8 7 11 11 C 1.40644 * 122.28498 * 180.02562 * 10 9 8 12 12 C 1.36640 * 117.95154 * 179.97438 * 11 10 9 13 13 C 1.39398 * 119.92558 * 0.02562 * 12 11 10 14 14 N 1.31204 * 121.85387 * 0.02562 * 13 12 11 15 15 C 1.33252 * 121.22222 * 359.72567 * 14 13 12 16 16 C 1.53039 * 109.44846 * 119.96916 * 2 1 3 17 17 C 1.53197 * 109.31290 * 181.37644 * 16 2 1 18 18 N 1.46928 * 108.77406 * 305.36563 * 17 16 2 19 19 C 1.36942 * 120.62637 * 233.63061 * 18 17 16 20 20 H 1.07998 * 120.00290 * 27.66378 * 19 18 17 21 21 C 1.38817 * 119.99379 * 207.66512 * 19 18 17 22 22 N 1.31620 * 120.00235 * 17.36228 * 21 19 18 23 23 Si 1.86805 * 119.99764 * 197.35917 * 21 19 18 24 24 H 1.48500 * 109.46814 * 60.00004 * 23 21 19 25 25 H 1.48499 * 109.47052 * 180.02562 * 23 21 19 26 26 H 1.48501 * 109.46991 * 300.00513 * 23 21 19 27 27 C 1.46921 * 118.73953 * 53.60529 * 18 17 16 28 28 C 1.53048 * 109.45911 * 240.02800 * 2 1 3 29 29 H 1.08993 * 109.47010 * 60.00087 * 1 2 3 30 30 H 1.09001 * 109.47052 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46561 * 299.99601 * 1 2 3 32 32 H 0.97003 * 120.00314 * 240.02713 * 3 2 1 33 33 H 1.07996 * 119.13291 * 180.02562 * 8 7 6 34 34 H 1.08000 * 120.63387 * 179.97438 * 9 8 7 35 35 H 1.07998 * 121.02560 * 359.95283 * 11 10 9 36 36 H 1.07998 * 120.03430 * 180.02562 * 12 11 10 37 37 H 1.08000 * 119.07234 * 179.97438 * 13 12 11 38 38 H 1.09002 * 109.49850 * 301.32827 * 16 2 1 39 39 H 1.09007 * 109.49665 * 61.42604 * 16 2 1 40 40 H 1.09006 * 109.58466 * 185.57903 * 17 16 2 41 41 H 1.09000 * 109.58506 * 65.15043 * 17 16 2 42 42 H 0.96997 * 119.99571 * 179.97438 * 22 21 19 43 43 H 1.09003 * 109.58599 * 186.60065 * 27 18 17 44 44 H 1.09007 * 109.69983 * 66.25150 * 27 18 17 45 45 H 1.09001 * 109.49615 * 298.58156 * 28 2 1 46 46 H 1.08999 * 109.49364 * 58.64156 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0181 1.3812 0.0000 4 6 1.6929 2.2109 1.0112 5 8 0.9905 1.8144 1.9205 6 6 2.1861 3.6051 1.0115 7 7 2.9460 4.0380 0.0210 8 6 3.4150 5.2706 -0.0335 9 6 3.1393 6.1948 0.9504 10 6 2.3373 5.8067 2.0353 11 6 2.0088 6.6890 3.0802 12 6 1.2213 6.2178 4.0926 13 6 0.7709 4.8989 4.0670 14 7 1.0815 4.0800 3.0900 15 6 1.8415 4.4779 2.0704 16 6 2.0396 -0.7209 1.2501 17 6 3.5712 -0.6890 1.2645 18 7 4.0676 -1.2494 0.0002 19 6 4.9753 -2.2748 0.0004 20 1 5.0078 -2.9671 0.8287 21 6 5.8535 -2.4244 -1.0642 22 7 6.0601 -1.4227 -1.8927 23 14 6.7422 -4.0473 -1.3210 24 1 5.7464 -5.1304 -1.5224 25 1 7.6164 -3.9491 -2.5173 26 1 7.5705 -4.3524 -0.1268 27 6 3.5713 -0.6891 -1.2640 28 6 2.0399 -0.7209 -1.2501 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3632 0.5138 0.8901 32 1 2.5754 1.6988 -0.7277 33 1 4.0309 5.5622 -0.8713 34 1 3.5327 7.1987 0.8882 35 1 2.3682 7.7074 3.0825 36 1 0.9481 6.8666 4.9116 37 1 0.1496 4.5407 4.8745 38 1 1.6570 -0.2207 2.1399 39 1 1.6973 -1.7557 1.2383 40 1 3.9412 -1.2851 2.0987 41 1 3.9143 0.3404 1.3676 42 1 6.6741 -1.5271 -2.6363 43 1 3.9417 -1.2851 -2.0982 44 1 3.9145 0.3401 -1.3696 45 1 1.6976 -1.7557 -1.2383 46 1 1.6569 -0.2212 -2.1398 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001045464887.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:12:57 Heat of formation + Delta-G solvation = 44.489233 kcal Electronic energy + Delta-G solvation = -30090.183158 eV Core-core repulsion = 26172.918673 eV Total energy + Delta-G solvation = -3917.264484 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.35443 -41.15718 -39.13449 -38.63141 -36.08963 -34.73990 -33.68461 -32.67132 -32.32985 -31.64573 -31.11970 -29.08408 -26.54062 -25.92024 -25.10547 -24.61144 -23.95684 -22.73195 -21.83884 -20.26499 -19.66693 -18.96321 -18.62108 -18.33152 -17.30564 -16.84322 -16.51291 -16.25020 -15.77168 -15.62930 -15.50576 -15.35782 -15.24067 -15.14667 -14.80212 -14.51584 -14.25188 -14.04544 -13.97768 -13.70021 -13.31414 -13.11853 -13.07963 -13.01173 -12.85229 -12.61932 -12.51524 -12.21089 -12.00512 -11.82061 -11.74624 -11.44155 -11.30991 -10.99697 -10.79005 -10.52475 -10.35793 -10.08127 -9.91278 -9.44841 -8.66630 -7.86409 -5.31395 -1.07798 -0.31689 0.67725 1.47070 1.49277 1.56473 1.69173 2.12477 2.25041 2.51872 3.06699 3.10128 3.24223 3.27468 3.45126 3.65869 3.69351 3.73784 3.85996 3.96128 4.02756 4.13782 4.25326 4.32478 4.47031 4.49321 4.58877 4.63006 4.65823 4.74120 4.80014 4.88022 4.90649 4.95870 4.97177 5.11949 5.14619 5.20447 5.27358 5.34419 5.36931 5.47236 5.63621 5.64234 5.70617 5.77314 6.39229 6.53384 6.72466 6.96976 7.15681 7.32504 7.85325 8.39188 9.19520 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.016654 B = 0.003156 C = 0.002951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1680.852749 B = 8871.063015 C = 9486.298019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.185 3.815 3 N -0.694 5.694 4 C 0.561 3.439 5 O -0.524 6.524 6 C 0.097 3.903 7 N -0.460 5.460 8 C 0.051 3.949 9 C -0.092 4.092 10 C -0.106 4.106 11 C -0.052 4.052 12 C -0.152 4.152 13 C 0.127 3.873 14 N -0.479 5.479 15 C 0.083 3.917 16 C -0.129 4.129 17 C 0.155 3.845 18 N -0.604 5.604 19 C -0.269 4.269 20 H 0.061 0.939 21 C -0.046 4.046 22 N -0.930 5.930 23 Si 0.968 3.032 24 H -0.277 1.277 25 H -0.291 1.291 26 H -0.279 1.279 27 C 0.181 3.819 28 C -0.131 4.131 29 H 0.060 0.940 30 H 0.074 0.926 31 H 0.060 0.940 32 H 0.406 0.594 33 H 0.194 0.806 34 H 0.196 0.804 35 H 0.191 0.809 36 H 0.187 0.813 37 H 0.184 0.816 38 H 0.069 0.931 39 H 0.068 0.932 40 H 0.042 0.958 41 H -0.005 1.005 42 H 0.251 0.749 43 H 0.059 0.941 44 H 0.001 0.999 45 H 0.074 0.926 46 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.841 21.448 7.461 25.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.100 3.900 3 N -0.345 5.345 4 C 0.346 3.654 5 O -0.399 6.399 6 C -0.054 4.054 7 N -0.173 5.173 8 C -0.096 4.096 9 C -0.112 4.112 10 C -0.113 4.113 11 C -0.077 4.077 12 C -0.172 4.172 13 C -0.047 4.047 14 N -0.188 5.188 15 C -0.041 4.041 16 C -0.169 4.169 17 C 0.029 3.971 18 N -0.328 5.328 19 C -0.399 4.399 20 H 0.079 0.921 21 C -0.242 4.242 22 N -0.576 5.576 23 Si 0.796 3.204 24 H -0.203 1.203 25 H -0.217 1.217 26 H -0.205 1.205 27 C 0.055 3.945 28 C -0.170 4.170 29 H 0.080 0.920 30 H 0.093 0.907 31 H 0.079 0.921 32 H 0.242 0.758 33 H 0.211 0.789 34 H 0.213 0.787 35 H 0.208 0.792 36 H 0.204 0.796 37 H 0.201 0.799 38 H 0.088 0.912 39 H 0.086 0.914 40 H 0.061 0.939 41 H 0.013 0.987 42 H 0.060 0.940 43 H 0.078 0.922 44 H 0.019 0.981 45 H 0.092 0.908 46 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -11.230 19.700 7.147 23.776 hybrid contribution 1.254 0.420 -0.014 1.323 sum -9.975 20.120 7.134 23.563 Atomic orbital electron populations 1.22097 0.93295 1.02825 1.02413 1.20271 0.94082 0.80004 0.95684 1.46019 1.52342 1.11470 1.24693 1.17891 0.80739 0.84316 0.82453 1.90720 1.37473 1.75856 1.35841 1.21414 0.97489 0.94728 0.91795 1.67292 1.06838 1.19458 1.23676 1.23211 0.98639 0.87237 1.00489 1.22922 0.94310 1.02772 0.91233 1.19379 0.99402 0.93899 0.98620 1.21966 0.94543 1.00633 0.90587 1.22533 0.97287 0.96688 1.00699 1.23929 0.94761 0.90841 0.95119 1.68240 1.11727 1.37315 1.01494 1.19626 0.97025 0.92822 0.94594 1.22222 0.96274 1.00076 0.98291 1.20800 0.93071 0.94499 0.88687 1.44258 1.48352 1.39472 1.00713 1.19461 1.10498 1.03581 1.06324 0.92108 1.25760 0.98144 1.00461 0.99810 1.70178 1.38418 1.30668 1.18307 0.85339 0.78039 0.80050 0.76963 1.20324 1.21711 1.20517 1.20555 0.89710 0.95309 0.88881 1.22324 0.97860 1.00584 0.96209 0.92046 0.90683 0.92077 0.75795 0.78931 0.78676 0.79197 0.79593 0.79898 0.91201 0.91361 0.93937 0.98703 0.94002 0.92238 0.98115 0.90759 0.90261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.78 8.40 71.98 0.60 -4.17 16 2 C 0.18 6.90 0.66 3.63 0.00 6.90 16 3 N -0.69 -26.34 4.09 -425.58 -1.74 -28.08 16 4 C 0.56 21.91 7.23 86.80 0.63 22.54 16 5 O -0.52 -22.06 11.42 -3.86 -0.04 -22.10 16 6 C 0.10 3.38 6.81 42.46 0.29 3.67 16 7 N -0.46 -14.33 9.48 -184.14 -1.75 -16.07 16 8 C 0.05 1.10 11.12 84.56 0.94 2.04 16 9 C -0.09 -1.44 9.93 22.68 0.23 -1.22 16 10 C -0.11 -2.16 5.75 -21.27 -0.12 -2.28 16 11 C -0.05 -0.60 9.94 22.48 0.22 -0.38 16 12 C -0.15 -1.70 10.03 22.18 0.22 -1.48 16 13 C 0.13 2.47 11.14 85.07 0.95 3.42 16 14 N -0.48 -14.74 8.49 -187.92 -1.60 -16.33 16 15 C 0.08 2.55 6.61 40.63 0.27 2.81 16 16 C -0.13 -5.30 4.67 30.67 0.14 -5.16 16 17 C 0.16 7.48 6.26 86.36 0.54 8.02 16 18 N -0.60 -32.20 2.99 -699.08 -2.09 -34.30 16 19 C -0.27 -15.48 9.59 84.03 0.81 -14.67 16 20 H 0.06 3.46 7.89 -2.91 -0.02 3.44 16 21 C -0.05 -2.63 4.91 84.86 0.42 -2.21 16 22 N -0.93 -55.60 11.19 21.65 0.24 -55.36 16 23 Si 0.97 45.89 29.59 68.60 2.03 47.92 16 24 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 25 H -0.29 -13.69 7.11 99.48 0.71 -12.99 16 26 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 27 C 0.18 8.91 5.03 86.36 0.43 9.35 16 28 C -0.13 -5.05 4.96 30.67 0.15 -4.90 16 29 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 30 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 31 H 0.06 2.16 6.16 -2.39 -0.01 2.14 16 32 H 0.41 15.62 6.61 -92.71 -0.61 15.00 16 33 H 0.19 2.79 8.06 -2.91 -0.02 2.77 16 34 H 0.20 0.97 8.06 -2.91 -0.02 0.95 16 35 H 0.19 0.40 8.06 -2.91 -0.02 0.38 16 36 H 0.19 0.39 8.06 -2.91 -0.02 0.37 16 37 H 0.18 2.48 8.06 -2.91 -0.02 2.45 16 38 H 0.07 2.95 6.21 -2.39 -0.01 2.93 16 39 H 0.07 2.72 8.14 -2.38 -0.02 2.70 16 40 H 0.04 2.05 7.93 -2.38 -0.02 2.03 16 41 H 0.00 -0.26 7.74 -2.39 -0.02 -0.27 16 42 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 43 H 0.06 3.27 6.03 -2.39 -0.01 3.26 16 44 H 0.00 0.04 6.94 -2.38 -0.02 0.03 16 45 H 0.07 2.85 8.14 -2.39 -0.02 2.83 16 46 H 0.08 2.68 8.14 -2.39 -0.02 2.66 16 Total: -1.00 -80.18 366.44 2.18 -78.00 By element: Atomic # 1 Polarization: 23.64 SS G_CDS: 0.40 Total: 24.04 kcal Atomic # 6 Polarization: 15.57 SS G_CDS: 6.72 Total: 22.29 kcal Atomic # 7 Polarization: -143.21 SS G_CDS: -6.93 Total: -150.15 kcal Atomic # 8 Polarization: -22.06 SS G_CDS: -0.04 Total: -22.10 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 2.03 Total: 47.92 kcal Total: -80.18 2.18 -78.00 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045464887.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.487 kcal (2) G-P(sol) polarization free energy of solvation -80.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.998 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds