Wall clock time and date at job start Tue Mar 31 2020 23:13:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46501 * 109.45828 * 2 1 4 4 C 1.34768 * 119.99988 * 60.00228 * 3 2 1 5 5 O 1.21548 * 120.00472 * 359.97438 * 4 3 2 6 6 C 1.47864 * 119.99844 * 179.97438 * 4 3 2 7 7 C 1.40633 * 120.26193 * 0.02562 * 6 4 3 8 8 N 1.30858 * 121.66199 * 179.97438 * 7 6 4 9 9 C 1.33598 * 121.58022 * 0.02562 * 8 7 6 10 10 C 1.40633 * 121.62586 * 179.97438 * 9 8 7 11 11 N 1.31157 * 120.03837 * 180.02562 * 10 9 8 12 12 C 1.32498 * 122.89105 * 359.97438 * 11 10 9 13 13 C 1.36312 * 121.70697 * 359.97438 * 12 11 10 14 14 C 1.40600 * 118.65691 * 359.78974 * 13 12 11 15 15 C 1.38989 * 120.26275 * 180.02562 * 6 4 3 16 16 C 1.53043 * 109.45780 * 119.97266 * 2 1 3 17 17 C 1.53163 * 109.32701 * 181.38421 * 16 2 1 18 18 N 1.46929 * 108.76822 * 305.35812 * 17 16 2 19 19 C 1.36934 * 120.62752 * 233.63193 * 18 17 16 20 20 H 1.07994 * 120.00391 * 151.80845 * 19 18 17 21 21 C 1.38817 * 119.99828 * 331.80160 * 19 18 17 22 22 N 1.31619 * 120.00302 * 343.08980 * 21 19 18 23 23 Si 1.86810 * 119.99695 * 163.09470 * 21 19 18 24 24 H 1.48497 * 109.47025 * 60.00093 * 23 21 19 25 25 H 1.48498 * 109.46829 * 180.02562 * 23 21 19 26 26 H 1.48503 * 109.46771 * 299.99636 * 23 21 19 27 27 C 1.46921 * 118.74124 * 53.60532 * 18 17 16 28 28 C 1.53038 * 109.45712 * 240.02479 * 2 1 3 29 29 H 1.09010 * 109.47054 * 60.00132 * 1 2 3 30 30 H 1.09001 * 109.47198 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47552 * 300.00101 * 1 2 3 32 32 H 0.97002 * 119.99340 * 239.99186 * 3 2 1 33 33 H 1.07999 * 119.17040 * 359.97438 * 7 6 4 34 34 H 1.07995 * 119.98563 * 0.03923 * 10 9 8 35 35 H 1.07992 * 119.14728 * 179.97438 * 12 11 10 36 36 H 1.08009 * 120.67247 * 180.02562 * 13 12 11 37 37 H 1.08001 * 121.11128 * 359.97438 * 15 6 4 38 38 H 1.08998 * 109.49421 * 301.32206 * 16 2 1 39 39 H 1.09003 * 109.49496 * 61.41962 * 16 2 1 40 40 H 1.08994 * 109.59269 * 185.56909 * 17 16 2 41 41 H 1.09004 * 109.70835 * 65.21010 * 17 16 2 42 42 H 0.97000 * 119.99569 * 179.97438 * 22 21 19 43 43 H 1.08999 * 109.58630 * 186.60502 * 27 18 17 44 44 H 1.09006 * 109.70132 * 66.25207 * 27 18 17 45 45 H 1.08995 * 109.50014 * 298.57624 * 28 2 1 46 46 H 1.08995 * 109.49987 * 58.65152 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0180 1.3813 0.0000 4 6 1.6923 2.2111 1.0108 5 8 0.9932 1.8136 1.9222 6 6 2.1853 3.6051 1.0110 7 6 2.9940 4.0710 -0.0410 8 7 3.4449 5.2991 -0.0687 9 6 3.1593 6.1714 0.9021 10 6 3.6438 7.4913 0.8736 11 7 3.3444 8.3217 1.8437 12 6 2.5902 7.9784 2.8775 13 6 2.0703 6.7243 3.0000 14 6 2.3442 5.7798 1.9952 15 6 1.8532 4.4653 2.0510 16 6 2.0398 -0.7209 1.2500 17 6 3.5710 -0.6890 1.2646 18 7 4.0676 -1.2494 0.0004 19 6 4.9752 -2.2747 0.0006 20 1 5.0025 -2.9719 -0.8238 21 6 5.8602 -2.4180 1.0603 22 7 6.0655 -1.4143 1.8867 23 14 6.7601 -4.0354 1.3136 24 1 7.5836 -4.3365 0.1151 25 1 7.6394 -3.9311 2.5057 26 1 5.7719 -5.1242 1.5216 27 6 3.5713 -0.6891 -1.2640 28 6 2.0398 -0.7210 -1.2500 29 1 -0.3634 0.5139 -0.8901 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 2.5757 1.6986 -0.7275 33 1 3.2494 3.3982 -0.8463 34 1 4.2625 7.8215 0.0523 35 1 2.3820 8.7112 3.6430 36 1 1.4571 6.4626 3.8498 37 1 1.2336 4.1355 2.8718 38 1 1.6573 -0.2208 2.1398 39 1 1.6975 -1.7557 1.2382 40 1 3.9411 -1.2849 2.0988 41 1 3.9163 0.3396 1.3688 42 1 6.6836 -1.5147 2.6274 43 1 3.9416 -1.2852 -2.0980 44 1 3.9145 0.3401 -1.3696 45 1 1.6976 -1.7557 -1.2382 46 1 1.6570 -0.2212 -2.1398 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001045501861.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:13:05 Heat of formation + Delta-G solvation = 57.475043 kcal Electronic energy + Delta-G solvation = -29684.842057 eV Core-core repulsion = 25768.140679 eV Total energy + Delta-G solvation = -3916.701377 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.50789 -40.19848 -38.29562 -37.27790 -34.55083 -33.92659 -32.68917 -31.53927 -30.66722 -30.54282 -29.94973 -27.48469 -25.66521 -24.76753 -24.10971 -22.86365 -22.36422 -21.80662 -20.76738 -19.02041 -18.69068 -18.21196 -17.51728 -16.86846 -16.46258 -15.33606 -15.30084 -14.94961 -14.88024 -14.61005 -14.50058 -14.23164 -13.90275 -13.52424 -13.46132 -13.41287 -13.27373 -13.12842 -12.85985 -12.69823 -12.39839 -11.93914 -11.67478 -11.45156 -11.22946 -11.05107 -10.97168 -10.73797 -10.49064 -10.30361 -10.25528 -10.06212 -9.95256 -9.68997 -9.63169 -9.54796 -9.22756 -8.78919 -8.70111 -8.47817 -6.69399 -5.80618 -3.24047 -0.18983 0.22532 1.48621 2.38426 3.16082 3.27424 3.36827 3.43224 3.43879 3.77949 3.83217 4.08026 4.16609 4.36410 4.41390 4.47394 4.49417 4.76181 4.94196 5.11133 5.23458 5.25812 5.30922 5.35883 5.42568 5.46256 5.54786 5.61338 5.77028 5.89594 5.93411 6.02530 6.06609 6.13867 6.22843 6.28768 6.38230 6.44896 6.61932 6.66962 6.72661 6.85908 6.97846 7.36455 7.36907 7.62331 7.65476 7.70633 7.77834 8.32359 8.42834 9.19022 9.82318 10.38569 11.27292 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013877 B = 0.003049 C = 0.002768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2017.311155 B = 9180.389721 C =10111.516971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.184 3.816 3 N -0.700 5.700 4 C 0.564 3.436 5 O -0.530 6.530 6 C -0.164 4.164 7 C 0.164 3.836 8 N -0.457 5.457 9 C 0.081 3.919 10 C 0.163 3.837 11 N -0.471 5.471 12 C 0.070 3.930 13 C -0.132 4.132 14 C -0.086 4.086 15 C 0.004 3.996 16 C -0.152 4.152 17 C 0.177 3.823 18 N -0.590 5.590 19 C -0.256 4.256 20 H 0.065 0.935 21 C 0.004 3.996 22 N -0.900 5.900 23 Si 0.902 3.098 24 H -0.283 1.283 25 H -0.291 1.291 26 H -0.284 1.284 27 C 0.145 3.855 28 C -0.138 4.138 29 H 0.047 0.953 30 H 0.061 0.939 31 H 0.073 0.927 32 H 0.397 0.603 33 H 0.167 0.833 34 H 0.174 0.826 35 H 0.160 0.840 36 H 0.145 0.855 37 H 0.158 0.842 38 H 0.071 0.929 39 H 0.061 0.939 40 H 0.084 0.916 41 H 0.015 0.985 42 H 0.254 0.746 43 H 0.057 0.943 44 H 0.013 0.987 45 H 0.077 0.923 46 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.746 14.494 -2.324 18.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.099 3.901 3 N -0.351 5.351 4 C 0.350 3.650 5 O -0.407 6.407 6 C -0.171 4.171 7 C -0.010 4.010 8 N -0.165 5.165 9 C -0.043 4.043 10 C -0.010 4.010 11 N -0.179 5.179 12 C -0.073 4.073 13 C -0.153 4.153 14 C -0.093 4.093 15 C -0.022 4.022 16 C -0.191 4.191 17 C 0.052 3.948 18 N -0.313 5.313 19 C -0.386 4.386 20 H 0.082 0.918 21 C -0.195 4.195 22 N -0.544 5.544 23 Si 0.732 3.268 24 H -0.209 1.209 25 H -0.217 1.217 26 H -0.210 1.210 27 C 0.018 3.982 28 C -0.178 4.178 29 H 0.066 0.934 30 H 0.080 0.920 31 H 0.092 0.908 32 H 0.233 0.767 33 H 0.184 0.816 34 H 0.191 0.809 35 H 0.177 0.823 36 H 0.162 0.838 37 H 0.176 0.824 38 H 0.090 0.910 39 H 0.080 0.920 40 H 0.102 0.898 41 H 0.033 0.967 42 H 0.064 0.936 43 H 0.075 0.925 44 H 0.030 0.970 45 H 0.095 0.905 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -10.319 15.462 -2.086 18.706 hybrid contribution 0.033 -1.898 0.575 1.984 sum -10.286 13.563 -1.511 17.090 Atomic orbital electron populations 1.22234 0.95193 1.02096 1.02364 1.20346 0.92700 0.79495 0.97531 1.46035 1.52403 1.12354 1.24303 1.17799 0.80521 0.84145 0.82561 1.90715 1.38106 1.76418 1.35504 1.21265 1.01952 0.96202 0.97635 1.23203 0.90026 0.91950 0.95829 1.67897 1.20695 1.02787 1.25136 1.20063 0.96576 0.96130 0.91493 1.23143 0.95020 0.86754 0.96120 1.67457 1.12267 1.36666 1.01554 1.22283 0.94049 0.95203 0.95753 1.21994 1.00667 0.93907 0.98711 1.18954 0.98880 0.95119 0.96395 1.21914 0.93482 0.90199 0.96640 1.22590 1.00867 0.99227 0.96450 1.20680 0.87167 0.96932 0.90058 1.44047 1.48351 1.39554 0.99337 1.19119 1.09799 1.02902 1.06738 0.91760 1.25048 0.97163 0.97351 0.99898 1.70025 1.37338 1.29016 1.18066 0.86386 0.79295 0.83820 0.77343 1.20890 1.21661 1.21029 1.20867 0.90379 0.96205 0.90731 1.22356 0.99747 1.00667 0.95019 0.93375 0.92027 0.90792 0.76713 0.81619 0.80861 0.82318 0.83760 0.82411 0.91043 0.91987 0.89770 0.96654 0.93602 0.92486 0.96961 0.90477 0.92476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.25 8.40 37.16 0.31 -1.94 16 2 C 0.18 2.90 0.66 -131.78 -0.09 2.81 16 3 N -0.70 -10.14 4.06 -48.50 -0.20 -10.34 16 4 C 0.56 8.55 7.20 -12.32 -0.09 8.46 16 5 O -0.53 -9.27 12.60 5.32 0.07 -9.21 16 6 C -0.16 -2.15 5.89 -104.78 -0.62 -2.77 16 7 C 0.16 2.00 10.68 -17.06 -0.18 1.82 16 8 N -0.46 -5.84 10.33 -10.65 -0.11 -5.95 16 9 C 0.08 0.99 6.62 -84.81 -0.56 0.43 16 10 C 0.16 1.76 11.25 -16.94 -0.19 1.57 16 11 N -0.47 -5.11 10.28 -13.11 -0.13 -5.24 16 12 C 0.07 0.63 11.08 -17.96 -0.20 0.43 16 13 C -0.13 -1.20 9.88 -39.38 -0.39 -1.59 16 14 C -0.09 -1.00 5.75 -106.80 -0.61 -1.61 16 15 C 0.00 0.05 9.51 -38.48 -0.37 -0.31 16 16 C -0.15 -2.93 4.66 -26.62 -0.12 -3.06 16 17 C 0.18 4.16 5.04 -3.72 -0.02 4.14 16 18 N -0.59 -14.05 2.99 -172.34 -0.52 -14.57 16 19 C -0.26 -6.83 9.58 -15.06 -0.14 -6.97 16 20 H 0.06 1.68 7.88 -52.49 -0.41 1.26 16 21 C 0.00 0.12 4.92 -17.43 -0.09 0.03 16 22 N -0.90 -25.94 11.20 55.49 0.62 -25.32 16 23 Si 0.90 21.50 29.59 -169.99 -5.03 16.47 16 24 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 25 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 26 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 27 C 0.15 2.73 6.24 -3.71 -0.02 2.71 16 28 C -0.14 -2.12 4.96 -26.61 -0.13 -2.25 16 29 H 0.05 0.60 8.14 -51.92 -0.42 0.17 16 30 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 31 H 0.07 1.14 6.16 -51.93 -0.32 0.82 16 32 H 0.40 5.02 5.29 -40.82 -0.22 4.80 16 33 H 0.17 1.66 6.37 -52.49 -0.33 1.32 16 34 H 0.17 1.49 8.06 -52.49 -0.42 1.07 16 35 H 0.16 0.95 8.06 -52.49 -0.42 0.53 16 36 H 0.14 0.91 8.06 -52.48 -0.42 0.49 16 37 H 0.16 1.72 7.71 -52.49 -0.40 1.31 16 38 H 0.07 1.43 6.20 -51.93 -0.32 1.11 16 39 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 40 H 0.08 2.28 6.06 -51.93 -0.31 1.97 16 41 H 0.02 0.38 7.75 -51.93 -0.40 -0.02 16 42 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 43 H 0.06 1.06 7.93 -51.93 -0.41 0.65 16 44 H 0.01 0.23 6.94 -51.93 -0.36 -0.13 16 45 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 46 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 366.17 15.07 5.52 5.52 Total: -1.00 -32.13 366.17 -9.31 -41.44 By element: Atomic # 1 Polarization: 11.30 SS G_CDS: -6.02 Total: 5.29 kcal Atomic # 6 Polarization: 5.42 SS G_CDS: -3.51 Total: 1.91 kcal Atomic # 7 Polarization: -61.08 SS G_CDS: -0.34 Total: -61.42 kcal Atomic # 8 Polarization: -9.27 SS G_CDS: 0.07 Total: -9.21 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.03 Total: 16.47 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -32.13 -9.31 -41.44 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045501861.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.917 kcal (2) G-P(sol) polarization free energy of solvation -32.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.442 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds