Wall clock time and date at job start Tue Mar 31 2020 23:13:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46501 * 109.45828 * 2 1 4 4 C 1.34768 * 119.99988 * 60.00228 * 3 2 1 5 5 O 1.21548 * 120.00472 * 359.97438 * 4 3 2 6 6 C 1.47864 * 119.99844 * 179.97438 * 4 3 2 7 7 C 1.40633 * 120.26193 * 0.02562 * 6 4 3 8 8 N 1.30858 * 121.66199 * 179.97438 * 7 6 4 9 9 C 1.33598 * 121.58022 * 0.02562 * 8 7 6 10 10 C 1.40633 * 121.62586 * 179.97438 * 9 8 7 11 11 N 1.31157 * 120.03837 * 180.02562 * 10 9 8 12 12 C 1.32498 * 122.89105 * 359.97438 * 11 10 9 13 13 C 1.36312 * 121.70697 * 359.97438 * 12 11 10 14 14 C 1.40600 * 118.65691 * 359.78974 * 13 12 11 15 15 C 1.38989 * 120.26275 * 180.02562 * 6 4 3 16 16 C 1.53043 * 109.45780 * 119.97266 * 2 1 3 17 17 C 1.53163 * 109.32701 * 181.38421 * 16 2 1 18 18 N 1.46929 * 108.76822 * 305.35812 * 17 16 2 19 19 C 1.36934 * 120.62752 * 233.63193 * 18 17 16 20 20 H 1.07994 * 120.00391 * 151.80845 * 19 18 17 21 21 C 1.38817 * 119.99828 * 331.80160 * 19 18 17 22 22 N 1.31619 * 120.00302 * 343.08980 * 21 19 18 23 23 Si 1.86810 * 119.99695 * 163.09470 * 21 19 18 24 24 H 1.48497 * 109.47025 * 60.00093 * 23 21 19 25 25 H 1.48498 * 109.46829 * 180.02562 * 23 21 19 26 26 H 1.48503 * 109.46771 * 299.99636 * 23 21 19 27 27 C 1.46921 * 118.74124 * 53.60532 * 18 17 16 28 28 C 1.53038 * 109.45712 * 240.02479 * 2 1 3 29 29 H 1.09010 * 109.47054 * 60.00132 * 1 2 3 30 30 H 1.09001 * 109.47198 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47552 * 300.00101 * 1 2 3 32 32 H 0.97002 * 119.99340 * 239.99186 * 3 2 1 33 33 H 1.07999 * 119.17040 * 359.97438 * 7 6 4 34 34 H 1.07995 * 119.98563 * 0.03923 * 10 9 8 35 35 H 1.07992 * 119.14728 * 179.97438 * 12 11 10 36 36 H 1.08009 * 120.67247 * 180.02562 * 13 12 11 37 37 H 1.08001 * 121.11128 * 359.97438 * 15 6 4 38 38 H 1.08998 * 109.49421 * 301.32206 * 16 2 1 39 39 H 1.09003 * 109.49496 * 61.41962 * 16 2 1 40 40 H 1.08994 * 109.59269 * 185.56909 * 17 16 2 41 41 H 1.09004 * 109.70835 * 65.21010 * 17 16 2 42 42 H 0.97000 * 119.99569 * 179.97438 * 22 21 19 43 43 H 1.08999 * 109.58630 * 186.60502 * 27 18 17 44 44 H 1.09006 * 109.70132 * 66.25207 * 27 18 17 45 45 H 1.08995 * 109.50014 * 298.57624 * 28 2 1 46 46 H 1.08995 * 109.49987 * 58.65152 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0180 1.3813 0.0000 4 6 1.6923 2.2111 1.0108 5 8 0.9932 1.8136 1.9222 6 6 2.1853 3.6051 1.0110 7 6 2.9940 4.0710 -0.0410 8 7 3.4449 5.2991 -0.0687 9 6 3.1593 6.1714 0.9021 10 6 3.6438 7.4913 0.8736 11 7 3.3444 8.3217 1.8437 12 6 2.5902 7.9784 2.8775 13 6 2.0703 6.7243 3.0000 14 6 2.3442 5.7798 1.9952 15 6 1.8532 4.4653 2.0510 16 6 2.0398 -0.7209 1.2500 17 6 3.5710 -0.6890 1.2646 18 7 4.0676 -1.2494 0.0004 19 6 4.9752 -2.2747 0.0006 20 1 5.0025 -2.9719 -0.8238 21 6 5.8602 -2.4180 1.0603 22 7 6.0655 -1.4143 1.8867 23 14 6.7601 -4.0354 1.3136 24 1 7.5836 -4.3365 0.1151 25 1 7.6394 -3.9311 2.5057 26 1 5.7719 -5.1242 1.5216 27 6 3.5713 -0.6891 -1.2640 28 6 2.0398 -0.7210 -1.2500 29 1 -0.3634 0.5139 -0.8901 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 2.5757 1.6986 -0.7275 33 1 3.2494 3.3982 -0.8463 34 1 4.2625 7.8215 0.0523 35 1 2.3820 8.7112 3.6430 36 1 1.4571 6.4626 3.8498 37 1 1.2336 4.1355 2.8718 38 1 1.6573 -0.2208 2.1398 39 1 1.6975 -1.7557 1.2382 40 1 3.9411 -1.2849 2.0988 41 1 3.9163 0.3396 1.3688 42 1 6.6836 -1.5147 2.6274 43 1 3.9416 -1.2852 -2.0980 44 1 3.9145 0.3401 -1.3696 45 1 1.6976 -1.7557 -1.2382 46 1 1.6570 -0.2212 -2.1398 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001045501861.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:13:04 Heat of formation + Delta-G solvation = 37.117598 kcal Electronic energy + Delta-G solvation = -29685.724822 eV Core-core repulsion = 25768.140679 eV Total energy + Delta-G solvation = -3917.584143 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.40927 -41.39142 -39.34411 -38.54163 -36.17437 -34.82171 -33.97530 -33.08189 -31.79381 -31.56499 -31.46939 -29.06918 -26.62258 -25.88224 -25.62631 -23.94639 -23.70440 -23.06023 -22.22887 -20.33533 -19.76065 -19.19707 -18.78167 -18.28254 -17.43044 -16.84060 -16.42452 -16.22719 -16.09291 -15.78047 -15.61510 -15.37067 -15.21426 -15.15022 -14.84903 -14.65318 -14.31527 -14.30089 -13.97475 -13.73667 -13.48135 -13.27617 -13.20139 -12.95892 -12.81435 -12.56007 -12.53003 -12.26787 -11.96691 -11.95206 -11.74697 -11.50910 -11.31166 -11.05922 -10.79251 -10.52147 -10.50107 -10.43506 -10.00568 -9.55706 -8.64735 -7.86160 -5.31171 -1.06760 -0.64770 0.62543 1.43760 1.45780 1.48569 1.54551 2.04570 2.24243 2.51507 2.91541 2.96127 3.26644 3.29076 3.37287 3.48202 3.56421 3.59397 3.72975 3.80184 3.96380 4.07991 4.13493 4.16874 4.36047 4.48102 4.51109 4.63375 4.69477 4.73044 4.79091 4.81827 4.90473 4.93252 4.97899 5.06851 5.16449 5.17871 5.22472 5.36788 5.39297 5.46126 5.51661 5.61667 5.66495 5.77753 6.39611 6.48070 6.54743 6.82481 7.16004 7.16765 7.89021 8.39611 9.19164 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013877 B = 0.003049 C = 0.002768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2017.311155 B = 9180.389721 C =10111.516971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.187 3.813 3 N -0.696 5.696 4 C 0.565 3.435 5 O -0.558 6.558 6 C -0.180 4.180 7 C 0.161 3.839 8 N -0.469 5.469 9 C 0.063 3.937 10 C 0.154 3.846 11 N -0.481 5.481 12 C 0.068 3.932 13 C -0.127 4.127 14 C -0.099 4.099 15 C 0.008 3.992 16 C -0.139 4.139 17 C 0.192 3.808 18 N -0.607 5.607 19 C -0.259 4.259 20 H 0.070 0.930 21 C -0.052 4.052 22 N -0.935 5.935 23 Si 0.963 3.037 24 H -0.273 1.273 25 H -0.299 1.299 26 H -0.280 1.280 27 C 0.138 3.862 28 C -0.125 4.125 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.057 0.943 32 H 0.407 0.593 33 H 0.183 0.817 34 H 0.189 0.811 35 H 0.192 0.808 36 H 0.174 0.826 37 H 0.166 0.834 38 H 0.060 0.940 39 H 0.057 0.943 40 H 0.039 0.961 41 H -0.008 1.008 42 H 0.246 0.754 43 H 0.060 0.940 44 H 0.024 0.976 45 H 0.075 0.925 46 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.046 15.300 -3.485 19.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.102 3.898 3 N -0.348 5.348 4 C 0.351 3.649 5 O -0.438 6.438 6 C -0.187 4.187 7 C -0.014 4.014 8 N -0.177 5.177 9 C -0.060 4.060 10 C -0.018 4.018 11 N -0.190 5.190 12 C -0.074 4.074 13 C -0.147 4.147 14 C -0.106 4.106 15 C -0.019 4.019 16 C -0.179 4.179 17 C 0.066 3.934 18 N -0.331 5.331 19 C -0.390 4.390 20 H 0.087 0.913 21 C -0.247 4.247 22 N -0.581 5.581 23 Si 0.791 3.209 24 H -0.199 1.199 25 H -0.225 1.225 26 H -0.206 1.206 27 C 0.013 3.987 28 C -0.164 4.164 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.076 0.924 32 H 0.244 0.756 33 H 0.200 0.800 34 H 0.206 0.794 35 H 0.209 0.791 36 H 0.192 0.808 37 H 0.184 0.816 38 H 0.078 0.922 39 H 0.075 0.925 40 H 0.058 0.942 41 H 0.011 0.989 42 H 0.055 0.945 43 H 0.078 0.922 44 H 0.042 0.958 45 H 0.094 0.906 46 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -11.629 16.280 -3.304 20.278 hybrid contribution 0.428 -2.043 0.969 2.301 sum -11.201 14.237 -2.335 18.265 Atomic orbital electron populations 1.22123 0.93180 1.02836 1.02766 1.20260 0.94098 0.79743 0.95712 1.45958 1.52444 1.11768 1.24602 1.18064 0.79911 0.84847 0.82060 1.90697 1.39482 1.77145 1.36489 1.21145 1.03345 0.95319 0.98864 1.23417 0.89760 0.92136 0.96053 1.67904 1.21112 1.03033 1.25683 1.20353 0.97141 0.96693 0.91835 1.23387 0.95348 0.86324 0.96786 1.67518 1.12627 1.36856 1.02017 1.22861 0.92939 0.95922 0.95727 1.22335 1.00349 0.93306 0.98733 1.19165 0.99043 0.95360 0.97078 1.22093 0.92988 0.90387 0.96403 1.22382 0.97606 0.99504 0.98416 1.20322 0.89657 0.94463 0.88917 1.44269 1.48211 1.39566 1.01027 1.19492 1.09400 1.03615 1.06468 0.91257 1.25775 0.98642 1.00114 1.00187 1.70191 1.38413 1.30830 1.18642 0.85413 0.78115 0.80354 0.77010 1.19872 1.22510 1.20600 1.21103 0.92795 0.96436 0.88384 1.22231 0.96678 1.01149 0.96328 0.90954 0.91130 0.92386 0.75582 0.79992 0.79441 0.79075 0.80816 0.81621 0.92156 0.92460 0.94216 0.98945 0.94476 0.92171 0.95845 0.90606 0.88248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.87 8.40 71.98 0.60 -3.27 16 2 C 0.19 5.60 0.66 3.63 0.00 5.60 16 3 N -0.70 -19.37 4.06 -425.63 -1.73 -21.10 16 4 C 0.56 16.95 7.20 86.79 0.62 17.57 16 5 O -0.56 -19.66 12.60 -3.87 -0.05 -19.71 16 6 C -0.18 -4.69 5.89 -19.96 -0.12 -4.80 16 7 C 0.16 3.85 10.68 85.42 0.91 4.76 16 8 N -0.47 -11.80 10.33 -187.60 -1.94 -13.74 16 9 C 0.06 1.50 6.62 40.36 0.27 1.77 16 10 C 0.15 3.20 11.25 85.38 0.96 4.16 16 11 N -0.48 -9.68 10.28 -195.40 -2.01 -11.69 16 12 C 0.07 1.06 11.08 84.14 0.93 2.00 16 13 C -0.13 -2.04 9.88 22.40 0.22 -1.81 16 14 C -0.10 -2.19 5.75 -21.27 -0.12 -2.31 16 15 C 0.01 0.19 9.51 22.98 0.22 0.41 16 16 C -0.14 -5.44 4.66 30.66 0.14 -5.30 16 17 C 0.19 9.32 5.04 86.35 0.44 9.75 16 18 N -0.61 -29.04 2.99 -699.15 -2.09 -31.14 16 19 C -0.26 -13.91 9.58 84.04 0.81 -13.11 16 20 H 0.07 3.58 7.88 -2.91 -0.02 3.56 16 21 C -0.05 -2.89 4.92 84.86 0.42 -2.48 16 22 N -0.93 -55.83 11.20 21.65 0.24 -55.59 16 23 Si 0.96 44.95 29.59 68.60 2.03 46.98 16 24 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 25 H -0.30 -14.20 7.11 99.48 0.71 -13.49 16 26 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 27 C 0.14 4.98 6.24 86.37 0.54 5.52 16 28 C -0.12 -3.46 4.96 30.67 0.15 -3.31 16 29 H 0.07 1.52 8.14 -2.38 -0.02 1.50 16 30 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 31 H 0.06 1.71 6.16 -2.39 -0.01 1.70 16 32 H 0.41 9.59 5.29 -92.71 -0.49 9.10 16 33 H 0.18 3.48 6.37 -2.91 -0.02 3.46 16 34 H 0.19 3.11 8.06 -2.91 -0.02 3.08 16 35 H 0.19 1.63 8.06 -2.91 -0.02 1.61 16 36 H 0.17 1.67 8.06 -2.91 -0.02 1.64 16 37 H 0.17 3.52 7.71 -2.91 -0.02 3.50 16 38 H 0.06 2.49 6.20 -2.39 -0.01 2.47 16 39 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 40 H 0.04 2.26 6.06 -2.39 -0.01 2.25 16 41 H -0.01 -0.39 7.75 -2.39 -0.02 -0.41 16 42 H 0.25 14.46 8.31 -92.71 -0.77 13.68 16 43 H 0.06 2.12 7.93 -2.39 -0.02 2.11 16 44 H 0.02 0.81 6.94 -2.38 -0.02 0.79 16 45 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 46 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 Total: -1.00 -71.74 366.17 1.98 -69.75 By element: Atomic # 1 Polarization: 20.55 SS G_CDS: 0.53 Total: 21.08 kcal Atomic # 6 Polarization: 8.16 SS G_CDS: 7.00 Total: 15.15 kcal Atomic # 7 Polarization: -125.73 SS G_CDS: -7.52 Total: -133.25 kcal Atomic # 8 Polarization: -19.66 SS G_CDS: -0.05 Total: -19.71 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.98 kcal Total: -71.74 1.98 -69.75 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045501861.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.872 kcal (2) G-P(sol) polarization free energy of solvation -71.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.754 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds