Wall clock time and date at job start Tue Mar 31 2020 23:13:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46497 * 109.46001 * 2 1 4 4 C 1.34770 * 120.00324 * 60.02634 * 3 2 1 5 5 O 1.21552 * 119.99989 * 359.97438 * 4 3 2 6 6 C 1.47918 * 120.00088 * 180.27866 * 4 3 2 7 7 C 1.38939 * 119.84377 * 179.45457 * 6 4 3 8 8 C 1.40652 * 117.38202 * 179.74929 * 7 6 4 9 9 C 1.40262 * 122.03095 * 180.26172 * 8 7 6 10 10 C 1.36270 * 119.47522 * 180.31987 * 9 8 7 11 11 C 1.39332 * 120.86832 * 359.95590 * 10 9 8 12 12 C 1.36224 * 121.15964 * 0.02562 * 11 10 9 13 13 C 1.40335 * 119.68488 * 0.02562 * 12 11 10 14 14 N 1.33814 * 121.62826 * 179.97438 * 13 12 11 15 15 N 1.28435 * 121.68595 * 180.02562 * 14 13 12 16 16 C 1.53035 * 109.44851 * 119.96515 * 2 1 3 17 17 C 1.53195 * 109.31367 * 181.37785 * 16 2 1 18 18 N 1.46928 * 108.77467 * 305.36418 * 17 16 2 19 19 C 1.36939 * 120.62949 * 233.62759 * 18 17 16 20 20 H 1.08004 * 119.99745 * 27.67102 * 19 18 17 21 21 C 1.38808 * 119.99743 * 207.66345 * 19 18 17 22 22 N 1.31619 * 120.00279 * 17.36729 * 21 19 18 23 23 Si 1.86802 * 119.99733 * 197.36212 * 21 19 18 24 24 H 1.48496 * 109.47263 * 60.00581 * 23 21 19 25 25 H 1.48497 * 109.46804 * 180.02562 * 23 21 19 26 26 H 1.48498 * 109.46990 * 299.99935 * 23 21 19 27 27 C 1.46922 * 118.73758 * 53.60743 * 18 17 16 28 28 C 1.53039 * 109.45946 * 240.02589 * 2 1 3 29 29 H 1.08998 * 109.47347 * 60.00166 * 1 2 3 30 30 H 1.09001 * 109.47560 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47360 * 300.00059 * 1 2 3 32 32 H 0.97003 * 119.99470 * 240.03273 * 3 2 1 33 33 H 1.08000 * 121.31142 * 359.97438 * 7 6 4 34 34 H 1.07995 * 120.26144 * 0.32553 * 9 8 7 35 35 H 1.07993 * 119.56777 * 179.97438 * 10 9 8 36 36 H 1.08004 * 119.41677 * 180.02562 * 11 10 9 37 37 H 1.07998 * 120.15810 * 180.02562 * 12 11 10 38 38 H 1.09001 * 109.49907 * 301.32957 * 16 2 1 39 39 H 1.09000 * 109.50030 * 61.42628 * 16 2 1 40 40 H 1.09003 * 109.58746 * 185.57461 * 17 16 2 41 41 H 1.09001 * 109.58421 * 65.15290 * 17 16 2 42 42 H 0.96999 * 120.00315 * 179.97438 * 22 21 19 43 43 H 1.08994 * 109.58421 * 186.60359 * 27 18 17 44 44 H 1.08999 * 109.70550 * 66.24395 * 27 18 17 45 45 H 1.09003 * 109.49800 * 298.57702 * 28 2 1 46 46 H 1.08999 * 109.50061 * 58.64263 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0180 1.3813 0.0000 4 6 1.6928 2.2110 1.0110 5 8 0.9940 1.8133 1.9227 6 6 2.1805 3.6074 1.0078 7 6 1.8338 4.4632 2.0460 8 6 2.3304 5.7781 1.9937 9 6 2.0459 6.7211 2.9923 10 6 2.5491 7.9830 2.8859 11 6 3.3421 8.3471 1.7996 12 6 3.6379 7.4559 0.8127 13 6 3.1376 6.1468 0.8856 14 7 3.4033 5.2403 -0.0621 15 7 2.9456 4.0420 0.0032 16 6 2.0395 -0.7208 1.2501 17 6 3.5711 -0.6889 1.2645 18 7 4.0676 -1.2494 0.0003 19 6 4.9753 -2.2747 0.0005 20 1 5.0078 -2.9670 0.8289 21 6 5.8535 -2.4243 -1.0640 22 7 6.0601 -1.4227 -1.8925 23 14 6.7421 -4.0473 -1.3206 24 1 5.7464 -5.1304 -1.5221 25 1 7.6163 -3.9491 -2.5169 26 1 7.5705 -4.3522 -0.1264 27 6 3.5713 -0.6891 -1.2640 28 6 2.0398 -0.7209 -1.2500 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 2.5752 1.6987 -0.7278 33 1 1.2106 4.1308 2.8630 34 1 1.4330 6.4492 3.8389 35 1 2.3306 8.7103 3.6536 36 1 3.7290 9.3537 1.7391 37 1 4.2545 7.7554 -0.0218 38 1 1.6569 -0.2206 2.1398 39 1 1.6973 -1.7556 1.2384 40 1 3.9412 -1.2848 2.0988 41 1 3.9142 0.3406 1.3676 42 1 6.6741 -1.5272 -2.6361 43 1 3.9416 -1.2852 -2.0980 44 1 3.9144 0.3401 -1.3696 45 1 1.6976 -1.7558 -1.2382 46 1 1.6569 -0.2213 -2.1398 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001045519278.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:13:02 Heat of formation + Delta-G solvation = 69.648884 kcal Electronic energy + Delta-G solvation = -29603.903683 eV Core-core repulsion = 25687.730203 eV Total energy + Delta-G solvation = -3916.173480 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.59204 -40.04325 -38.13080 -37.29374 -34.45255 -33.90163 -32.48142 -31.57959 -30.95940 -30.36466 -29.83922 -27.39301 -25.55839 -25.25780 -24.02490 -22.77461 -22.30063 -21.80738 -20.64373 -19.01789 -18.79067 -18.40295 -17.20250 -16.69527 -16.30639 -15.62382 -15.06155 -14.89226 -14.83700 -14.70051 -14.53173 -14.09352 -13.83627 -13.69988 -13.37581 -13.18867 -13.05160 -12.68826 -12.65030 -12.39059 -12.35829 -11.82435 -11.62671 -11.37012 -11.30808 -11.19951 -10.96720 -10.90158 -10.67450 -10.34355 -10.26478 -10.01596 -9.87475 -9.83398 -9.69374 -9.61176 -9.22130 -8.77919 -8.61149 -8.40998 -6.61402 -5.74158 -3.15704 -0.34478 0.14047 1.38791 2.18996 3.10331 3.19786 3.41506 3.47148 3.48518 3.71180 3.72838 3.98610 4.21166 4.28893 4.41048 4.53967 4.64698 4.74114 4.82839 5.17946 5.27906 5.32447 5.38832 5.40809 5.47783 5.50014 5.55851 5.64778 5.80109 5.86717 5.91425 6.00889 6.07333 6.21316 6.26620 6.32018 6.37082 6.41996 6.58224 6.67175 6.72746 6.84437 6.97608 7.07789 7.35319 7.66152 7.80280 7.85075 8.31848 8.42729 8.49599 9.25995 9.89645 10.46929 11.34230 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.015418 B = 0.002932 C = 0.002649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1815.568098 B = 9546.542610 C =10565.633190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.181 3.819 3 N -0.683 5.683 4 C 0.577 3.423 5 O -0.535 6.535 6 C 0.000 4.000 7 C -0.032 4.032 8 C -0.075 4.075 9 C -0.094 4.094 10 C -0.099 4.099 11 C -0.095 4.095 12 C -0.077 4.077 13 C 0.069 3.931 14 N -0.198 5.198 15 N -0.185 5.185 16 C -0.143 4.143 17 C 0.150 3.850 18 N -0.590 5.590 19 C -0.252 4.252 20 H 0.064 0.936 21 C 0.002 3.998 22 N -0.902 5.902 23 Si 0.902 3.098 24 H -0.284 1.284 25 H -0.291 1.291 26 H -0.284 1.284 27 C 0.170 3.830 28 C -0.146 4.146 29 H 0.049 0.951 30 H 0.061 0.939 31 H 0.072 0.928 32 H 0.412 0.588 33 H 0.166 0.834 34 H 0.140 0.860 35 H 0.135 0.865 36 H 0.137 0.863 37 H 0.146 0.854 38 H 0.072 0.928 39 H 0.066 0.934 40 H 0.051 0.949 41 H 0.013 0.987 42 H 0.254 0.746 43 H 0.090 0.910 44 H 0.019 0.981 45 H 0.073 0.927 46 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.652 19.067 7.244 23.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.096 3.904 3 N -0.333 5.333 4 C 0.360 3.640 5 O -0.413 6.413 6 C -0.134 4.134 7 C -0.062 4.062 8 C -0.083 4.083 9 C -0.113 4.113 10 C -0.119 4.119 11 C -0.116 4.116 12 C -0.099 4.099 13 C -0.058 4.058 14 N -0.054 5.054 15 N -0.043 5.043 16 C -0.183 4.183 17 C 0.023 3.977 18 N -0.313 5.313 19 C -0.381 4.381 20 H 0.082 0.918 21 C -0.196 4.196 22 N -0.546 5.546 23 Si 0.731 3.269 24 H -0.211 1.211 25 H -0.217 1.217 26 H -0.210 1.210 27 C 0.044 3.956 28 C -0.186 4.186 29 H 0.068 0.932 30 H 0.080 0.920 31 H 0.091 0.909 32 H 0.249 0.751 33 H 0.184 0.816 34 H 0.158 0.842 35 H 0.153 0.847 36 H 0.155 0.845 37 H 0.164 0.836 38 H 0.091 0.909 39 H 0.084 0.916 40 H 0.069 0.931 41 H 0.031 0.969 42 H 0.064 0.936 43 H 0.108 0.892 44 H 0.037 0.963 45 H 0.092 0.908 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -10.319 18.331 6.365 21.977 hybrid contribution 0.193 -0.271 0.770 0.838 sum -10.126 18.060 7.134 21.900 Atomic orbital electron populations 1.22231 0.95199 1.02097 1.02373 1.20389 0.92747 0.79593 0.97628 1.46063 1.51279 1.11814 1.24168 1.17397 0.80521 0.83149 0.82931 1.90716 1.38645 1.75808 1.36121 1.22738 0.99187 0.97275 0.94224 1.22582 0.94751 0.91111 0.97804 1.18827 0.98330 0.94859 0.96316 1.21041 0.99670 0.92832 0.97775 1.21114 0.96321 0.96382 0.98075 1.21096 0.96970 1.00139 0.93363 1.20830 0.98976 0.90230 0.99817 1.20490 0.96424 0.96433 0.92480 1.73934 1.14415 0.96015 1.21071 1.73289 1.03838 1.07755 1.19383 1.22409 0.99097 0.99749 0.97019 1.20834 0.90812 0.96072 0.89956 1.44024 1.48302 1.39579 0.99383 1.19145 1.09918 1.02936 1.06139 0.91803 1.25020 0.97224 0.97385 1.00020 1.70020 1.37697 1.28954 1.17954 0.86384 0.79240 0.83948 0.77280 1.21083 1.21676 1.20998 1.20763 0.86739 0.97368 0.90717 1.22532 1.01600 0.99972 0.94450 0.93202 0.91972 0.90941 0.75054 0.81614 0.84206 0.84710 0.84503 0.83648 0.90911 0.91574 0.93079 0.96878 0.93608 0.89173 0.96290 0.90841 0.92566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.45 8.40 37.16 0.31 -2.14 16 2 C 0.18 3.17 0.66 -131.78 -0.09 3.08 16 3 N -0.68 -11.79 4.09 -48.48 -0.20 -11.99 16 4 C 0.58 9.69 7.22 -12.30 -0.09 9.60 16 5 O -0.54 -9.48 12.57 5.32 0.07 -9.41 16 6 C 0.00 -0.01 6.82 -82.90 -0.57 -0.57 16 7 C -0.03 -0.39 9.51 -38.41 -0.37 -0.76 16 8 C -0.07 -0.83 5.75 -106.80 -0.61 -1.44 16 9 C -0.09 -0.72 9.81 -39.53 -0.39 -1.10 16 10 C -0.10 -0.59 9.96 -39.88 -0.40 -0.99 16 11 C -0.10 -0.60 9.94 -39.90 -0.40 -0.99 16 12 C -0.08 -0.69 10.00 -39.52 -0.40 -1.09 16 13 C 0.07 0.85 6.69 -84.79 -0.57 0.29 16 14 N -0.20 -3.02 11.55 32.23 0.37 -2.64 16 15 N -0.18 -3.02 10.70 33.24 0.36 -2.67 16 16 C -0.14 -2.71 4.67 -26.61 -0.12 -2.84 16 17 C 0.15 3.33 6.26 -3.71 -0.02 3.31 16 18 N -0.59 -14.92 2.99 -172.32 -0.52 -15.43 16 19 C -0.25 -6.99 9.58 -15.06 -0.14 -7.14 16 20 H 0.06 1.75 7.89 -52.48 -0.41 1.34 16 21 C 0.00 0.06 4.91 -17.43 -0.09 -0.03 16 22 N -0.90 -26.25 11.19 55.49 0.62 -25.63 16 23 Si 0.90 21.91 29.59 -169.99 -5.03 16.88 16 24 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 25 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 26 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 27 C 0.17 3.99 5.04 -3.71 -0.02 3.97 16 28 C -0.15 -2.73 4.96 -26.61 -0.13 -2.86 16 29 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 30 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.07 1.16 6.16 -51.93 -0.32 0.84 16 32 H 0.41 7.28 6.60 -40.82 -0.27 7.01 16 33 H 0.17 1.72 7.69 -52.49 -0.40 1.31 16 34 H 0.14 0.72 8.06 -52.49 -0.42 0.29 16 35 H 0.14 0.40 8.06 -52.49 -0.42 -0.02 16 36 H 0.14 0.45 8.06 -52.48 -0.42 0.03 16 37 H 0.15 1.08 8.06 -52.49 -0.42 0.65 16 38 H 0.07 1.37 6.20 -51.93 -0.32 1.05 16 39 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 40 H 0.05 1.13 7.93 -51.93 -0.41 0.72 16 41 H 0.01 0.31 7.74 -51.93 -0.40 -0.09 16 42 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 43 H 0.09 2.37 6.03 -51.93 -0.31 2.06 16 44 H 0.02 0.47 6.94 -51.93 -0.36 0.11 16 45 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 46 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 LS Contribution 368.58 15.07 5.55 5.55 Total: -1.00 -32.43 368.58 -9.01 -41.44 By element: Atomic # 1 Polarization: 11.76 SS G_CDS: -6.16 Total: 5.60 kcal Atomic # 6 Polarization: 2.38 SS G_CDS: -4.08 Total: -1.70 kcal Atomic # 7 Polarization: -59.00 SS G_CDS: 0.63 Total: -58.36 kcal Atomic # 8 Polarization: -9.48 SS G_CDS: 0.07 Total: -9.41 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.03 Total: 16.88 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -32.43 -9.01 -41.44 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045519278.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.088 kcal (2) G-P(sol) polarization free energy of solvation -32.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.439 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds