Wall clock time and date at job start Tue Mar 31 2020 23:13:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46497 * 109.46001 * 2 1 4 4 C 1.34770 * 120.00324 * 60.02634 * 3 2 1 5 5 O 1.21552 * 119.99989 * 359.97438 * 4 3 2 6 6 C 1.47918 * 120.00088 * 180.27866 * 4 3 2 7 7 C 1.38939 * 119.84377 * 179.45457 * 6 4 3 8 8 C 1.40652 * 117.38202 * 179.74929 * 7 6 4 9 9 C 1.40262 * 122.03095 * 180.26172 * 8 7 6 10 10 C 1.36270 * 119.47522 * 180.31987 * 9 8 7 11 11 C 1.39332 * 120.86832 * 359.95590 * 10 9 8 12 12 C 1.36224 * 121.15964 * 0.02562 * 11 10 9 13 13 C 1.40335 * 119.68488 * 0.02562 * 12 11 10 14 14 N 1.33814 * 121.62826 * 179.97438 * 13 12 11 15 15 N 1.28435 * 121.68595 * 180.02562 * 14 13 12 16 16 C 1.53035 * 109.44851 * 119.96515 * 2 1 3 17 17 C 1.53195 * 109.31367 * 181.37785 * 16 2 1 18 18 N 1.46928 * 108.77467 * 305.36418 * 17 16 2 19 19 C 1.36939 * 120.62949 * 233.62759 * 18 17 16 20 20 H 1.08004 * 119.99745 * 27.67102 * 19 18 17 21 21 C 1.38808 * 119.99743 * 207.66345 * 19 18 17 22 22 N 1.31619 * 120.00279 * 17.36729 * 21 19 18 23 23 Si 1.86802 * 119.99733 * 197.36212 * 21 19 18 24 24 H 1.48496 * 109.47263 * 60.00581 * 23 21 19 25 25 H 1.48497 * 109.46804 * 180.02562 * 23 21 19 26 26 H 1.48498 * 109.46990 * 299.99935 * 23 21 19 27 27 C 1.46922 * 118.73758 * 53.60743 * 18 17 16 28 28 C 1.53039 * 109.45946 * 240.02589 * 2 1 3 29 29 H 1.08998 * 109.47347 * 60.00166 * 1 2 3 30 30 H 1.09001 * 109.47560 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47360 * 300.00059 * 1 2 3 32 32 H 0.97003 * 119.99470 * 240.03273 * 3 2 1 33 33 H 1.08000 * 121.31142 * 359.97438 * 7 6 4 34 34 H 1.07995 * 120.26144 * 0.32553 * 9 8 7 35 35 H 1.07993 * 119.56777 * 179.97438 * 10 9 8 36 36 H 1.08004 * 119.41677 * 180.02562 * 11 10 9 37 37 H 1.07998 * 120.15810 * 180.02562 * 12 11 10 38 38 H 1.09001 * 109.49907 * 301.32957 * 16 2 1 39 39 H 1.09000 * 109.50030 * 61.42628 * 16 2 1 40 40 H 1.09003 * 109.58746 * 185.57461 * 17 16 2 41 41 H 1.09001 * 109.58421 * 65.15290 * 17 16 2 42 42 H 0.96999 * 120.00315 * 179.97438 * 22 21 19 43 43 H 1.08994 * 109.58421 * 186.60359 * 27 18 17 44 44 H 1.08999 * 109.70550 * 66.24395 * 27 18 17 45 45 H 1.09003 * 109.49800 * 298.57702 * 28 2 1 46 46 H 1.08999 * 109.50061 * 58.64263 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0180 1.3813 0.0000 4 6 1.6928 2.2110 1.0110 5 8 0.9940 1.8133 1.9227 6 6 2.1805 3.6074 1.0078 7 6 1.8338 4.4632 2.0460 8 6 2.3304 5.7781 1.9937 9 6 2.0459 6.7211 2.9923 10 6 2.5491 7.9830 2.8859 11 6 3.3421 8.3471 1.7996 12 6 3.6379 7.4559 0.8127 13 6 3.1376 6.1468 0.8856 14 7 3.4033 5.2403 -0.0621 15 7 2.9456 4.0420 0.0032 16 6 2.0395 -0.7208 1.2501 17 6 3.5711 -0.6889 1.2645 18 7 4.0676 -1.2494 0.0003 19 6 4.9753 -2.2747 0.0005 20 1 5.0078 -2.9670 0.8289 21 6 5.8535 -2.4243 -1.0640 22 7 6.0601 -1.4227 -1.8925 23 14 6.7421 -4.0473 -1.3206 24 1 5.7464 -5.1304 -1.5221 25 1 7.6163 -3.9491 -2.5169 26 1 7.5705 -4.3522 -0.1264 27 6 3.5713 -0.6891 -1.2640 28 6 2.0398 -0.7209 -1.2500 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 2.5752 1.6987 -0.7278 33 1 1.2106 4.1308 2.8630 34 1 1.4330 6.4492 3.8389 35 1 2.3306 8.7103 3.6536 36 1 3.7290 9.3537 1.7391 37 1 4.2545 7.7554 -0.0218 38 1 1.6569 -0.2206 2.1398 39 1 1.6973 -1.7556 1.2384 40 1 3.9412 -1.2848 2.0988 41 1 3.9142 0.3406 1.3676 42 1 6.6741 -1.5272 -2.6361 43 1 3.9416 -1.2852 -2.0980 44 1 3.9144 0.3401 -1.3696 45 1 1.6976 -1.7558 -1.2382 46 1 1.6569 -0.2213 -2.1398 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001045519278.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:13:01 Heat of formation + Delta-G solvation = 49.167862 kcal Electronic energy + Delta-G solvation = -29604.791807 eV Core-core repulsion = 25687.730203 eV Total energy + Delta-G solvation = -3917.061604 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.52165 -41.35888 -39.15406 -38.59169 -36.18412 -34.81856 -33.86067 -32.98083 -32.14160 -31.66918 -31.25445 -29.09460 -26.42750 -26.23494 -25.87068 -23.99767 -23.55710 -23.07125 -22.23666 -20.30963 -19.80301 -19.58521 -18.75952 -17.95915 -17.11837 -16.84993 -16.74481 -16.34214 -15.85981 -15.71076 -15.64480 -15.51814 -15.25365 -15.08984 -14.85174 -14.60308 -14.48069 -14.06898 -13.51147 -13.41468 -13.32790 -13.11268 -13.06680 -12.97392 -12.86372 -12.62974 -12.52488 -12.22836 -12.18217 -12.00541 -11.90112 -11.75909 -11.46075 -11.34063 -10.93831 -10.73149 -10.53134 -10.46946 -10.03797 -9.45775 -8.67589 -7.86880 -5.32190 -1.15625 -0.73532 0.64627 1.26311 1.46590 1.48733 1.55962 1.98145 2.12918 2.51276 2.71253 2.83059 3.19999 3.26993 3.33080 3.46579 3.67730 3.72422 3.77945 3.90568 4.01354 4.10955 4.13111 4.19242 4.43207 4.46362 4.53832 4.62189 4.69438 4.72794 4.76711 4.87295 4.90530 4.91426 4.95525 5.07734 5.11601 5.17939 5.25022 5.27557 5.32053 5.34839 5.45899 5.60530 5.63172 5.71002 5.75105 6.38387 6.47125 7.03643 7.14947 7.38593 7.85164 8.38149 9.18991 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.015418 B = 0.002932 C = 0.002649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1815.568098 B = 9546.542610 C =10565.633190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.182 3.818 3 N -0.689 5.689 4 C 0.580 3.420 5 O -0.549 6.549 6 C -0.031 4.031 7 C -0.025 4.025 8 C -0.085 4.085 9 C -0.099 4.099 10 C -0.083 4.083 11 C -0.070 4.070 12 C -0.103 4.103 13 C 0.050 3.950 14 N -0.231 5.231 15 N -0.220 5.220 16 C -0.130 4.130 17 C 0.152 3.848 18 N -0.605 5.605 19 C -0.267 4.267 20 H 0.063 0.937 21 C -0.048 4.048 22 N -0.932 5.932 23 Si 0.968 3.032 24 H -0.276 1.276 25 H -0.293 1.293 26 H -0.279 1.279 27 C 0.179 3.821 28 C -0.132 4.132 29 H 0.061 0.939 30 H 0.077 0.923 31 H 0.066 0.934 32 H 0.408 0.592 33 H 0.184 0.816 34 H 0.169 0.831 35 H 0.179 0.821 36 H 0.177 0.823 37 H 0.152 0.848 38 H 0.076 0.924 39 H 0.071 0.929 40 H 0.045 0.955 41 H -0.004 1.004 42 H 0.250 0.750 43 H 0.058 0.942 44 H -0.001 1.001 45 H 0.077 0.923 46 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.063 21.219 9.139 26.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.097 3.903 3 N -0.339 5.339 4 C 0.364 3.636 5 O -0.427 6.427 6 C -0.165 4.165 7 C -0.055 4.055 8 C -0.094 4.094 9 C -0.117 4.117 10 C -0.103 4.103 11 C -0.090 4.090 12 C -0.124 4.124 13 C -0.078 4.078 14 N -0.087 5.087 15 N -0.078 5.078 16 C -0.169 4.169 17 C 0.026 3.974 18 N -0.329 5.329 19 C -0.397 4.397 20 H 0.081 0.919 21 C -0.244 4.244 22 N -0.577 5.577 23 Si 0.796 3.204 24 H -0.202 1.202 25 H -0.219 1.219 26 H -0.205 1.205 27 C 0.053 3.947 28 C -0.171 4.171 29 H 0.081 0.919 30 H 0.096 0.904 31 H 0.085 0.915 32 H 0.244 0.756 33 H 0.201 0.799 34 H 0.186 0.814 35 H 0.196 0.804 36 H 0.194 0.806 37 H 0.170 0.830 38 H 0.095 0.905 39 H 0.089 0.911 40 H 0.064 0.936 41 H 0.014 0.986 42 H 0.059 0.941 43 H 0.077 0.923 44 H 0.017 0.983 45 H 0.095 0.905 46 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -11.752 20.484 8.270 25.022 hybrid contribution 0.693 -0.638 0.325 0.997 sum -11.059 19.846 8.596 24.291 Atomic orbital electron populations 1.22121 0.92755 1.03192 1.02716 1.20367 0.94431 0.79534 0.95939 1.46079 1.51530 1.11805 1.24445 1.17590 0.79975 0.83736 0.82329 1.90680 1.39317 1.76376 1.36373 1.22553 1.01179 0.96958 0.95838 1.22815 0.94200 0.91409 0.97093 1.19119 0.98176 0.95058 0.97010 1.21433 0.99997 0.92779 0.97494 1.21692 0.94006 0.96287 0.98280 1.21642 0.94635 1.01044 0.91652 1.21083 1.00275 0.89429 1.01642 1.20956 0.97063 0.97237 0.92509 1.73778 1.15610 0.96288 1.22990 1.73146 1.05235 1.08777 1.20622 1.22248 0.96150 1.00367 0.98151 1.20858 0.93208 0.94666 0.88690 1.44267 1.48364 1.39472 1.00763 1.19461 1.10387 1.03571 1.06255 0.91886 1.25781 0.98254 1.00439 0.99899 1.70185 1.38458 1.30749 1.18349 0.85338 0.78059 0.80075 0.76928 1.20199 1.21931 1.20458 1.20564 0.89887 0.95235 0.89024 1.22337 0.97692 1.00789 0.96301 0.91948 0.90450 0.91507 0.75603 0.79901 0.81386 0.80395 0.80554 0.83003 0.90531 0.91055 0.93609 0.98562 0.94063 0.92328 0.98343 0.90482 0.90308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.35 8.40 71.98 0.60 -3.75 16 2 C 0.18 6.36 0.66 3.63 0.00 6.36 16 3 N -0.69 -24.65 4.09 -425.59 -1.74 -26.39 16 4 C 0.58 20.10 7.22 86.81 0.63 20.73 16 5 O -0.55 -19.56 12.57 -3.88 -0.05 -19.60 16 6 C -0.03 -1.00 6.82 41.62 0.28 -0.72 16 7 C -0.03 -0.63 9.51 23.03 0.22 -0.41 16 8 C -0.09 -1.80 5.75 -21.27 -0.12 -1.93 16 9 C -0.10 -1.15 9.81 22.30 0.22 -0.93 16 10 C -0.08 -0.56 9.96 22.07 0.22 -0.34 16 11 C -0.07 -0.57 9.94 22.06 0.22 -0.35 16 12 C -0.10 -1.69 10.00 22.31 0.22 -1.47 16 13 C 0.05 1.24 6.69 40.27 0.27 1.51 16 14 N -0.23 -7.49 11.55 -51.93 -0.60 -8.09 16 15 N -0.22 -7.77 10.70 -48.75 -0.52 -8.29 16 16 C -0.13 -4.93 4.67 30.67 0.14 -4.79 16 17 C 0.15 6.98 6.26 86.36 0.54 7.52 16 18 N -0.61 -31.65 2.99 -699.10 -2.09 -33.75 16 19 C -0.27 -15.19 9.58 84.03 0.81 -14.38 16 20 H 0.06 3.52 7.89 -2.91 -0.02 3.50 16 21 C -0.05 -2.75 4.91 84.86 0.42 -2.33 16 22 N -0.93 -56.22 11.19 21.65 0.24 -55.98 16 23 Si 0.97 45.89 29.59 68.60 2.03 47.92 16 24 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 25 H -0.29 -13.90 7.11 99.48 0.71 -13.20 16 26 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 27 C 0.18 8.72 5.04 86.36 0.43 9.16 16 28 C -0.13 -4.95 4.96 30.67 0.15 -4.79 16 29 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 30 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 31 H 0.07 2.05 6.16 -2.39 -0.01 2.04 16 32 H 0.41 15.37 6.60 -92.71 -0.61 14.76 16 33 H 0.18 3.65 7.69 -2.91 -0.02 3.63 16 34 H 0.17 0.98 8.06 -2.91 -0.02 0.96 16 35 H 0.18 -0.21 8.06 -2.91 -0.02 -0.23 16 36 H 0.18 0.12 8.06 -2.91 -0.02 0.09 16 37 H 0.15 2.16 8.06 -2.91 -0.02 2.13 16 38 H 0.08 2.88 6.20 -2.39 -0.01 2.86 16 39 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 40 H 0.05 2.10 7.93 -2.39 -0.02 2.08 16 41 H 0.00 -0.17 7.74 -2.39 -0.02 -0.19 16 42 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 43 H 0.06 3.22 6.03 -2.39 -0.01 3.21 16 44 H 0.00 -0.07 6.94 -2.39 -0.02 -0.09 16 45 H 0.08 2.85 8.14 -2.39 -0.02 2.83 16 46 H 0.08 2.59 8.14 -2.39 -0.02 2.58 16 Total: -1.00 -75.04 368.58 2.93 -72.11 By element: Atomic # 1 Polarization: 22.57 SS G_CDS: 0.40 Total: 22.97 kcal Atomic # 6 Polarization: 3.84 SS G_CDS: 5.26 Total: 9.10 kcal Atomic # 7 Polarization: -127.79 SS G_CDS: -4.71 Total: -132.50 kcal Atomic # 8 Polarization: -19.56 SS G_CDS: -0.05 Total: -19.60 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 2.03 Total: 47.92 kcal Total: -75.04 2.93 -72.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045519278.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.281 kcal (2) G-P(sol) polarization free energy of solvation -75.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.113 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds