Wall clock time and date at job start Tue Mar 31 2020 23:13:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46499 * 109.45763 * 2 1 4 4 C 1.34769 * 120.00007 * 60.02963 * 3 2 1 5 5 O 1.21551 * 120.00171 * 359.97438 * 4 3 2 6 6 C 1.47874 * 119.99997 * 179.97438 * 4 3 2 7 7 C 1.38948 * 121.42479 * 354.72501 * 6 4 3 8 8 N 1.32578 * 120.34417 * 179.97438 * 7 6 4 9 9 N 1.28380 * 123.42872 * 359.97438 * 8 7 6 10 10 C 1.33457 * 121.85638 * 0.02562 * 9 8 7 11 11 C 1.40584 * 121.74282 * 180.02562 * 10 9 8 12 12 C 1.36120 * 119.61417 * 179.97438 * 11 10 9 13 13 C 1.39371 * 121.12659 * 0.02562 * 12 11 10 14 14 C 1.36340 * 120.88806 * 359.97438 * 13 12 11 15 15 C 1.39857 * 119.49893 * 359.97438 * 14 13 12 16 16 C 1.53038 * 109.44609 * 119.96630 * 2 1 3 17 17 C 1.53192 * 109.31202 * 181.38138 * 16 2 1 18 18 N 1.46935 * 108.77653 * 305.36356 * 17 16 2 19 19 C 1.36934 * 120.63142 * 233.63479 * 18 17 16 20 20 H 1.08000 * 120.00210 * 28.63131 * 19 18 17 21 21 C 1.38815 * 119.99654 * 208.64018 * 19 18 17 22 22 N 1.31623 * 120.00088 * 16.05856 * 21 19 18 23 23 Si 1.86797 * 119.99732 * 196.05591 * 21 19 18 24 24 H 1.48497 * 109.47221 * 60.00207 * 23 21 19 25 25 H 1.48498 * 109.47053 * 179.97438 * 23 21 19 26 26 H 1.48498 * 109.47320 * 300.00009 * 23 21 19 27 27 C 1.46928 * 118.73571 * 53.60813 * 18 17 16 28 28 C 1.53042 * 109.46309 * 240.02680 * 2 1 3 29 29 H 1.09007 * 109.47042 * 60.00401 * 1 2 3 30 30 H 1.09003 * 109.47190 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47688 * 299.99997 * 1 2 3 32 32 H 0.97001 * 119.99589 * 240.02086 * 3 2 1 33 33 H 1.08003 * 119.82746 * 0.25893 * 7 6 4 34 34 H 1.08005 * 120.19745 * 359.97438 * 11 10 9 35 35 H 1.07997 * 119.43709 * 180.02562 * 12 11 10 36 36 H 1.08000 * 119.55503 * 179.97438 * 13 12 11 37 37 H 1.08006 * 120.24953 * 179.97438 * 14 13 12 38 38 H 1.08998 * 109.50066 * 301.32619 * 16 2 1 39 39 H 1.08997 * 109.50311 * 61.43001 * 16 2 1 40 40 H 1.08999 * 109.59065 * 185.57909 * 17 16 2 41 41 H 1.09000 * 109.70738 * 65.21647 * 17 16 2 42 42 H 0.96995 * 119.99514 * 180.02562 * 22 21 19 43 43 H 1.09001 * 109.58587 * 186.60889 * 27 18 17 44 44 H 1.08995 * 109.70235 * 66.25054 * 27 18 17 45 45 H 1.09000 * 109.49495 * 298.58179 * 28 2 1 46 46 H 1.09002 * 109.49824 * 58.64145 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0180 1.3813 0.0000 4 6 1.6927 2.2109 1.0111 5 8 0.9940 1.8132 1.9228 6 6 2.1858 3.6050 1.0114 7 6 3.0727 4.0600 0.0433 8 7 3.5006 5.3146 0.0637 9 7 3.1386 6.1711 0.9489 10 6 2.2909 5.8547 1.9299 11 6 1.8956 6.7946 2.8977 12 6 1.0280 6.4251 3.8793 13 6 0.5228 5.1278 3.9435 14 6 0.8838 4.1897 3.0223 15 6 1.7727 4.5354 1.9993 16 6 2.0395 -0.7208 1.2502 17 6 3.5710 -0.6889 1.2646 18 7 4.0677 -1.2493 0.0004 19 6 4.9753 -2.2747 0.0006 20 1 4.9974 -2.9762 0.8214 21 6 5.8671 -2.4122 -1.0543 22 7 6.0650 -1.4097 -1.8838 23 14 6.7864 -4.0202 -1.2963 24 1 5.8118 -5.1211 -1.5046 25 1 7.6704 -3.9110 -2.4845 26 1 7.6074 -4.3072 -0.0926 27 6 3.5714 -0.6890 -1.2640 28 6 2.0399 -0.7209 -1.2500 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 2.5753 1.6987 -0.7277 33 1 3.4116 3.3893 -0.7324 34 1 2.2780 7.8041 2.8626 35 1 0.7260 7.1496 4.6210 36 1 -0.1638 4.8619 4.7336 37 1 0.4864 3.1872 3.0821 38 1 1.6569 -0.2207 2.1399 39 1 1.6973 -1.7556 1.2384 40 1 3.9411 -1.2849 2.0988 41 1 3.9163 0.3397 1.3688 42 1 6.6879 -1.5060 -2.6210 43 1 3.9417 -1.2850 -2.0981 44 1 3.9145 0.3402 -1.3696 45 1 1.6976 -1.7557 -1.2382 46 1 1.6570 -0.2212 -2.1398 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001045570484.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:13:32 Heat of formation + Delta-G solvation = 75.213521 kcal Electronic energy + Delta-G solvation = -30093.134763 eV Core-core repulsion = 26177.202583 eV Total energy + Delta-G solvation = -3915.932179 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.69657 -40.12817 -38.06556 -37.56235 -34.58724 -33.97483 -32.19563 -31.82462 -31.08870 -30.19228 -29.97545 -27.51010 -26.07575 -24.54908 -24.16504 -23.21592 -22.41634 -21.45115 -20.72527 -19.06566 -18.81173 -18.17250 -17.85301 -16.83698 -15.79706 -15.58646 -15.38779 -15.30690 -14.93324 -14.75430 -14.51057 -14.03337 -13.91985 -13.61203 -13.50246 -13.29937 -13.15957 -12.70241 -12.59300 -12.51837 -12.14599 -11.90506 -11.73298 -11.43267 -11.31550 -11.06918 -10.98852 -10.85220 -10.75365 -10.50606 -10.43523 -10.32047 -9.94224 -9.79066 -9.68514 -9.60943 -9.20581 -8.90774 -8.58533 -8.51571 -6.71750 -5.84758 -3.27582 -0.48594 0.41062 1.37956 2.47035 2.95699 3.02945 3.35377 3.41286 3.42379 3.74911 3.76503 4.07876 4.21072 4.30825 4.45775 4.53068 4.70621 4.85362 4.96886 5.11870 5.24600 5.28356 5.33901 5.36951 5.40742 5.51906 5.55894 5.72844 5.85541 5.91027 5.94442 6.03877 6.06598 6.11187 6.19844 6.23137 6.29867 6.42950 6.47526 6.54457 6.58113 6.73338 6.82969 6.93733 7.19998 7.49853 7.57892 7.74864 8.16563 8.39491 8.39824 9.15910 9.78565 10.35451 11.23905 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.016893 B = 0.003129 C = 0.002902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1657.056975 B = 8945.460793 C = 9645.567273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.183 3.817 3 N -0.693 5.693 4 C 0.567 3.433 5 O -0.526 6.526 6 C -0.104 4.104 7 C 0.050 3.950 8 N -0.221 5.221 9 N -0.190 5.190 10 C 0.057 3.943 11 C -0.082 4.082 12 C -0.098 4.098 13 C -0.098 4.098 14 C -0.103 4.103 15 C -0.025 4.025 16 C -0.143 4.143 17 C 0.149 3.851 18 N -0.590 5.590 19 C -0.253 4.253 20 H 0.064 0.936 21 C 0.004 3.996 22 N -0.904 5.904 23 Si 0.903 3.097 24 H -0.284 1.284 25 H -0.290 1.290 26 H -0.283 1.283 27 C 0.171 3.829 28 C -0.147 4.147 29 H 0.049 0.951 30 H 0.062 0.938 31 H 0.072 0.928 32 H 0.402 0.598 33 H 0.178 0.822 34 H 0.144 0.856 35 H 0.136 0.864 36 H 0.135 0.865 37 H 0.174 0.826 38 H 0.073 0.927 39 H 0.067 0.933 40 H 0.052 0.948 41 H 0.013 0.987 42 H 0.255 0.745 43 H 0.091 0.909 44 H 0.015 0.985 45 H 0.075 0.925 46 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.219 12.777 7.008 19.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.099 3.901 3 N -0.344 5.344 4 C 0.352 3.648 5 O -0.404 6.404 6 C -0.120 4.120 7 C -0.103 4.103 8 N -0.073 5.073 9 N -0.045 5.045 10 C -0.072 4.072 11 C -0.103 4.103 12 C -0.118 4.118 13 C -0.118 4.118 14 C -0.121 4.121 15 C -0.034 4.034 16 C -0.183 4.183 17 C 0.023 3.977 18 N -0.313 5.313 19 C -0.383 4.383 20 H 0.082 0.918 21 C -0.195 4.195 22 N -0.548 5.548 23 Si 0.733 3.267 24 H -0.210 1.210 25 H -0.216 1.216 26 H -0.209 1.209 27 C 0.045 3.955 28 C -0.187 4.187 29 H 0.068 0.932 30 H 0.081 0.919 31 H 0.091 0.909 32 H 0.238 0.762 33 H 0.194 0.806 34 H 0.162 0.838 35 H 0.153 0.847 36 H 0.152 0.848 37 H 0.191 0.809 38 H 0.092 0.908 39 H 0.085 0.915 40 H 0.070 0.930 41 H 0.031 0.969 42 H 0.065 0.935 43 H 0.109 0.891 44 H 0.033 0.967 45 H 0.093 0.907 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -12.649 13.512 6.757 19.703 hybrid contribution 0.103 -1.702 0.011 1.705 sum -12.545 11.810 6.768 18.512 Atomic orbital electron populations 1.22234 0.95013 1.02234 1.02420 1.20401 0.92830 0.79156 0.97738 1.46120 1.51852 1.12409 1.24009 1.17667 0.80581 0.83753 0.82785 1.90538 1.38375 1.76045 1.35490 1.21278 0.98686 0.95702 0.96296 1.24389 0.93389 0.94850 0.97628 1.73054 1.17511 1.00662 1.16038 1.73606 1.06755 1.25813 0.98356 1.20389 0.96945 0.92915 0.96950 1.20769 0.97420 0.99190 0.92902 1.21103 0.96085 0.96753 0.97894 1.21279 0.98865 0.92909 0.98706 1.21975 0.95230 1.02751 0.92190 1.18700 0.96632 0.92732 0.95366 1.22411 0.99078 0.99842 0.96946 1.20842 0.90769 0.96073 0.90026 1.44014 1.48347 1.39613 0.99293 1.19145 1.09394 1.02736 1.07034 0.91780 1.25046 0.97091 0.97442 0.99910 1.69986 1.37450 1.29112 1.18264 0.86361 0.79391 0.83613 0.77349 1.21030 1.21616 1.20904 1.20746 0.86700 0.97089 0.90945 1.22557 1.01573 1.00192 0.94353 0.93192 0.91881 0.90863 0.76188 0.80551 0.83835 0.84655 0.84760 0.80886 0.90818 0.91478 0.92985 0.96923 0.93538 0.89092 0.96733 0.90678 0.92569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.19 8.40 37.16 0.31 -1.88 16 2 C 0.18 2.84 0.66 -131.78 -0.09 2.76 16 3 N -0.69 -10.06 4.06 -48.49 -0.20 -10.26 16 4 C 0.57 8.32 7.18 -12.32 -0.09 8.23 16 5 O -0.53 -8.27 9.87 5.32 0.05 -8.22 16 6 C -0.10 -1.45 5.95 -104.31 -0.62 -2.07 16 7 C 0.05 0.68 10.81 -16.97 -0.18 0.50 16 8 N -0.22 -3.31 11.47 30.73 0.35 -2.96 16 9 N -0.19 -2.79 11.52 32.21 0.37 -2.42 16 10 C 0.06 0.75 6.69 -84.87 -0.57 0.18 16 11 C -0.08 -0.80 10.01 -39.46 -0.39 -1.19 16 12 C -0.10 -0.77 9.94 -39.92 -0.40 -1.16 16 13 C -0.10 -0.86 9.96 -39.84 -0.40 -1.26 16 14 C -0.10 -1.22 9.28 -39.66 -0.37 -1.58 16 15 C -0.03 -0.34 5.77 -106.50 -0.61 -0.95 16 16 C -0.14 -2.49 4.67 -26.61 -0.12 -2.61 16 17 C 0.15 3.10 6.25 -3.71 -0.02 3.07 16 18 N -0.59 -14.00 2.99 -172.31 -0.52 -14.51 16 19 C -0.25 -6.75 9.58 -15.06 -0.14 -6.89 16 20 H 0.06 1.70 7.88 -52.49 -0.41 1.28 16 21 C 0.00 0.10 4.93 -17.43 -0.09 0.01 16 22 N -0.90 -25.15 11.18 55.49 0.62 -24.53 16 23 Si 0.90 21.24 29.58 -169.99 -5.03 16.21 16 24 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 25 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 26 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 27 C 0.17 3.68 5.02 -3.71 -0.02 3.67 16 28 C -0.15 -2.47 4.96 -26.61 -0.13 -2.61 16 29 H 0.05 0.63 8.14 -51.92 -0.42 0.20 16 30 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.07 1.05 6.16 -51.93 -0.32 0.73 16 32 H 0.40 5.47 5.45 -40.82 -0.22 5.25 16 33 H 0.18 2.05 6.55 -52.48 -0.34 1.71 16 34 H 0.14 1.09 8.06 -52.48 -0.42 0.67 16 35 H 0.14 0.62 8.06 -52.49 -0.42 0.19 16 36 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 37 H 0.17 2.20 5.13 -52.48 -0.27 1.93 16 38 H 0.07 1.27 6.20 -51.93 -0.32 0.95 16 39 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 40 H 0.05 1.10 7.93 -51.93 -0.41 0.68 16 41 H 0.01 0.28 7.74 -51.93 -0.40 -0.13 16 42 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 43 H 0.09 2.25 6.07 -51.93 -0.32 1.93 16 44 H 0.01 0.32 6.94 -51.93 -0.36 -0.04 16 45 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 46 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 361.31 15.07 5.44 5.44 Total: -1.00 -30.47 361.31 -8.73 -39.20 By element: Atomic # 1 Polarization: 11.73 SS G_CDS: -5.90 Total: 5.83 kcal Atomic # 6 Polarization: 0.14 SS G_CDS: -3.93 Total: -3.79 kcal Atomic # 7 Polarization: -55.31 SS G_CDS: 0.63 Total: -54.68 kcal Atomic # 8 Polarization: -8.27 SS G_CDS: 0.05 Total: -8.22 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.03 Total: 16.21 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -30.47 -8.73 -39.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045570484.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.412 kcal (2) G-P(sol) polarization free energy of solvation -30.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.199 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds