Wall clock time and date at job start Tue Mar 31 2020 23:13:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46499 * 109.45763 * 2 1 4 4 C 1.34769 * 120.00007 * 60.02963 * 3 2 1 5 5 O 1.21551 * 120.00171 * 359.97438 * 4 3 2 6 6 C 1.47874 * 119.99997 * 179.97438 * 4 3 2 7 7 C 1.38948 * 121.42479 * 354.72501 * 6 4 3 8 8 N 1.32578 * 120.34417 * 179.97438 * 7 6 4 9 9 N 1.28380 * 123.42872 * 359.97438 * 8 7 6 10 10 C 1.33457 * 121.85638 * 0.02562 * 9 8 7 11 11 C 1.40584 * 121.74282 * 180.02562 * 10 9 8 12 12 C 1.36120 * 119.61417 * 179.97438 * 11 10 9 13 13 C 1.39371 * 121.12659 * 0.02562 * 12 11 10 14 14 C 1.36340 * 120.88806 * 359.97438 * 13 12 11 15 15 C 1.39857 * 119.49893 * 359.97438 * 14 13 12 16 16 C 1.53038 * 109.44609 * 119.96630 * 2 1 3 17 17 C 1.53192 * 109.31202 * 181.38138 * 16 2 1 18 18 N 1.46935 * 108.77653 * 305.36356 * 17 16 2 19 19 C 1.36934 * 120.63142 * 233.63479 * 18 17 16 20 20 H 1.08000 * 120.00210 * 28.63131 * 19 18 17 21 21 C 1.38815 * 119.99654 * 208.64018 * 19 18 17 22 22 N 1.31623 * 120.00088 * 16.05856 * 21 19 18 23 23 Si 1.86797 * 119.99732 * 196.05591 * 21 19 18 24 24 H 1.48497 * 109.47221 * 60.00207 * 23 21 19 25 25 H 1.48498 * 109.47053 * 179.97438 * 23 21 19 26 26 H 1.48498 * 109.47320 * 300.00009 * 23 21 19 27 27 C 1.46928 * 118.73571 * 53.60813 * 18 17 16 28 28 C 1.53042 * 109.46309 * 240.02680 * 2 1 3 29 29 H 1.09007 * 109.47042 * 60.00401 * 1 2 3 30 30 H 1.09003 * 109.47190 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47688 * 299.99997 * 1 2 3 32 32 H 0.97001 * 119.99589 * 240.02086 * 3 2 1 33 33 H 1.08003 * 119.82746 * 0.25893 * 7 6 4 34 34 H 1.08005 * 120.19745 * 359.97438 * 11 10 9 35 35 H 1.07997 * 119.43709 * 180.02562 * 12 11 10 36 36 H 1.08000 * 119.55503 * 179.97438 * 13 12 11 37 37 H 1.08006 * 120.24953 * 179.97438 * 14 13 12 38 38 H 1.08998 * 109.50066 * 301.32619 * 16 2 1 39 39 H 1.08997 * 109.50311 * 61.43001 * 16 2 1 40 40 H 1.08999 * 109.59065 * 185.57909 * 17 16 2 41 41 H 1.09000 * 109.70738 * 65.21647 * 17 16 2 42 42 H 0.96995 * 119.99514 * 180.02562 * 22 21 19 43 43 H 1.09001 * 109.58587 * 186.60889 * 27 18 17 44 44 H 1.08995 * 109.70235 * 66.25054 * 27 18 17 45 45 H 1.09000 * 109.49495 * 298.58179 * 28 2 1 46 46 H 1.09002 * 109.49824 * 58.64145 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0180 1.3813 0.0000 4 6 1.6927 2.2109 1.0111 5 8 0.9940 1.8132 1.9228 6 6 2.1858 3.6050 1.0114 7 6 3.0727 4.0600 0.0433 8 7 3.5006 5.3146 0.0637 9 7 3.1386 6.1711 0.9489 10 6 2.2909 5.8547 1.9299 11 6 1.8956 6.7946 2.8977 12 6 1.0280 6.4251 3.8793 13 6 0.5228 5.1278 3.9435 14 6 0.8838 4.1897 3.0223 15 6 1.7727 4.5354 1.9993 16 6 2.0395 -0.7208 1.2502 17 6 3.5710 -0.6889 1.2646 18 7 4.0677 -1.2493 0.0004 19 6 4.9753 -2.2747 0.0006 20 1 4.9974 -2.9762 0.8214 21 6 5.8671 -2.4122 -1.0543 22 7 6.0650 -1.4097 -1.8838 23 14 6.7864 -4.0202 -1.2963 24 1 5.8118 -5.1211 -1.5046 25 1 7.6704 -3.9110 -2.4845 26 1 7.6074 -4.3072 -0.0926 27 6 3.5714 -0.6890 -1.2640 28 6 2.0399 -0.7209 -1.2500 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 2.5753 1.6987 -0.7277 33 1 3.4116 3.3893 -0.7324 34 1 2.2780 7.8041 2.8626 35 1 0.7260 7.1496 4.6210 36 1 -0.1638 4.8619 4.7336 37 1 0.4864 3.1872 3.0821 38 1 1.6569 -0.2207 2.1399 39 1 1.6973 -1.7556 1.2384 40 1 3.9411 -1.2849 2.0988 41 1 3.9163 0.3397 1.3688 42 1 6.6879 -1.5060 -2.6210 43 1 3.9417 -1.2850 -2.0981 44 1 3.9145 0.3402 -1.3696 45 1 1.6976 -1.7557 -1.2382 46 1 1.6570 -0.2212 -2.1398 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001045570484.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:13:31 Heat of formation + Delta-G solvation = 57.146917 kcal Electronic energy + Delta-G solvation = -30093.918189 eV Core-core repulsion = 26177.202583 eV Total energy + Delta-G solvation = -3916.715606 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.68730 -41.33948 -39.06501 -38.82095 -36.19896 -35.01348 -33.71179 -32.72606 -32.54889 -31.62787 -31.10288 -29.08860 -27.07471 -25.92330 -25.46862 -24.17582 -23.96771 -22.77255 -22.09016 -20.41893 -19.70722 -19.23585 -19.04253 -18.48385 -16.88249 -16.74144 -16.66143 -16.47954 -16.20483 -15.95792 -15.70859 -15.55329 -15.21589 -14.95036 -14.84118 -14.63020 -14.48655 -14.07192 -13.55064 -13.44233 -13.29639 -13.11404 -13.06284 -12.88092 -12.83501 -12.63202 -12.53151 -12.23574 -12.07450 -11.98083 -11.87107 -11.74336 -11.56877 -11.34539 -11.14938 -10.53844 -10.46512 -10.39623 -10.11478 -9.45830 -8.65510 -7.87944 -5.33176 -1.44700 -0.49657 0.51455 1.47156 1.48459 1.48904 1.55263 1.88231 1.98112 2.50869 2.82120 2.82880 3.10403 3.25247 3.27637 3.32077 3.68739 3.69188 3.81358 3.91282 4.00372 4.09599 4.11508 4.20686 4.38055 4.47133 4.47878 4.61581 4.69617 4.73314 4.76616 4.88280 4.91332 4.96288 4.97551 5.08190 5.13742 5.18120 5.26975 5.28692 5.34196 5.37933 5.47816 5.59464 5.63794 5.73154 5.75954 6.38331 6.41705 7.01415 7.16093 7.37314 7.85743 8.37341 9.17515 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.016893 B = 0.003129 C = 0.002902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1657.056975 B = 8945.460793 C = 9645.567273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.187 3.813 3 N -0.694 5.694 4 C 0.571 3.429 5 O -0.537 6.537 6 C -0.120 4.120 7 C 0.047 3.953 8 N -0.250 5.250 9 N -0.206 5.206 10 C 0.041 3.959 11 C -0.088 4.088 12 C -0.081 4.081 13 C -0.073 4.073 14 C -0.133 4.133 15 C -0.036 4.036 16 C -0.130 4.130 17 C 0.151 3.849 18 N -0.605 5.605 19 C -0.266 4.266 20 H 0.060 0.940 21 C -0.044 4.044 22 N -0.929 5.929 23 Si 0.963 3.037 24 H -0.278 1.278 25 H -0.293 1.293 26 H -0.280 1.280 27 C 0.177 3.823 28 C -0.133 4.133 29 H 0.064 0.936 30 H 0.073 0.927 31 H 0.067 0.933 32 H 0.405 0.595 33 H 0.187 0.813 34 H 0.165 0.835 35 H 0.181 0.819 36 H 0.169 0.831 37 H 0.162 0.838 38 H 0.077 0.923 39 H 0.067 0.933 40 H 0.041 0.959 41 H 0.002 0.998 42 H 0.251 0.749 43 H 0.057 0.943 44 H 0.007 0.993 45 H 0.073 0.927 46 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.337 13.759 8.627 22.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.102 3.898 3 N -0.345 5.345 4 C 0.357 3.643 5 O -0.416 6.416 6 C -0.135 4.135 7 C -0.106 4.106 8 N -0.101 5.101 9 N -0.060 5.060 10 C -0.089 4.089 11 C -0.109 4.109 12 C -0.101 4.101 13 C -0.093 4.093 14 C -0.151 4.151 15 C -0.046 4.046 16 C -0.170 4.170 17 C 0.025 3.975 18 N -0.329 5.329 19 C -0.396 4.396 20 H 0.078 0.922 21 C -0.240 4.240 22 N -0.574 5.574 23 Si 0.792 3.208 24 H -0.204 1.204 25 H -0.219 1.219 26 H -0.207 1.207 27 C 0.051 3.949 28 C -0.172 4.172 29 H 0.083 0.917 30 H 0.092 0.908 31 H 0.086 0.914 32 H 0.242 0.758 33 H 0.204 0.796 34 H 0.183 0.817 35 H 0.199 0.801 36 H 0.187 0.813 37 H 0.179 0.821 38 H 0.095 0.905 39 H 0.086 0.914 40 H 0.060 0.940 41 H 0.020 0.980 42 H 0.060 0.940 43 H 0.075 0.925 44 H 0.025 0.975 45 H 0.091 0.909 46 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -14.778 14.505 8.375 22.337 hybrid contribution 0.712 -1.895 -0.303 2.047 sum -14.066 12.610 8.072 20.544 Atomic orbital electron populations 1.22128 0.92799 1.03100 1.02852 1.20313 0.94318 0.79256 0.95872 1.46072 1.52058 1.12038 1.24316 1.17727 0.80209 0.83982 0.82424 1.90530 1.38885 1.76387 1.35802 1.21225 0.99568 0.95494 0.97205 1.24500 0.93431 0.94702 0.97971 1.72974 1.18831 1.01267 1.17075 1.73483 1.07465 1.26174 0.98918 1.20809 0.97009 0.93649 0.97467 1.21163 0.97732 0.99570 0.92402 1.21606 0.94008 0.97001 0.97516 1.21766 0.97365 0.92500 0.97663 1.21946 0.96475 1.03295 0.93381 1.18950 0.97039 0.92875 0.95701 1.22252 0.96170 1.00299 0.98285 1.20863 0.93102 0.94911 0.88587 1.44243 1.48333 1.39465 1.00851 1.19413 1.09875 1.03423 1.06936 0.92239 1.25716 0.98168 1.00140 0.99938 1.70128 1.38111 1.30599 1.18602 0.85409 0.78184 0.80325 0.76901 1.20359 1.21930 1.20655 1.20609 0.89758 0.95608 0.88918 1.22354 0.97745 1.00777 0.96314 0.91743 0.90789 0.91440 0.75825 0.79591 0.81736 0.80138 0.81321 0.82063 0.90474 0.91405 0.94039 0.97962 0.94039 0.92456 0.97536 0.90852 0.89862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.78 8.40 71.98 0.60 -3.18 16 2 C 0.19 5.62 0.66 3.63 0.00 5.62 16 3 N -0.69 -20.02 4.06 -425.62 -1.73 -21.75 16 4 C 0.57 16.77 7.18 86.80 0.62 17.39 16 5 O -0.54 -16.69 9.87 -3.88 -0.04 -16.73 16 6 C -0.12 -3.41 5.95 -19.66 -0.12 -3.53 16 7 C 0.05 1.33 10.81 84.75 0.92 2.24 16 8 N -0.25 -7.81 11.47 -56.68 -0.65 -8.46 16 9 N -0.21 -6.13 11.52 -52.00 -0.60 -6.73 16 10 C 0.04 1.05 6.69 40.38 0.27 1.32 16 11 C -0.09 -1.48 10.01 22.35 0.22 -1.25 16 12 C -0.08 -0.91 9.94 22.05 0.22 -0.69 16 13 C -0.07 -1.02 9.96 22.10 0.22 -0.80 16 14 C -0.13 -2.94 9.28 22.22 0.21 -2.73 16 15 C -0.04 -0.97 5.77 -21.08 -0.12 -1.09 16 16 C -0.13 -4.48 4.67 30.67 0.14 -4.33 16 17 C 0.15 6.38 6.25 86.36 0.54 6.92 16 18 N -0.61 -29.34 2.99 -699.07 -2.09 -31.43 16 19 C -0.27 -14.45 9.58 84.03 0.81 -13.65 16 20 H 0.06 3.21 7.88 -2.91 -0.02 3.19 16 21 C -0.04 -2.38 4.93 84.86 0.42 -1.97 16 22 N -0.93 -53.03 11.18 21.65 0.24 -52.79 16 23 Si 0.96 44.29 29.58 68.60 2.03 46.32 16 24 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 25 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 26 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 27 C 0.18 7.74 5.02 86.36 0.43 8.17 16 28 C -0.13 -4.34 4.96 30.67 0.15 -4.19 16 29 H 0.06 1.45 8.14 -2.38 -0.02 1.43 16 30 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 31 H 0.07 1.81 6.16 -2.39 -0.01 1.80 16 32 H 0.40 11.15 5.45 -92.71 -0.51 10.64 16 33 H 0.19 4.60 6.55 -2.91 -0.02 4.58 16 34 H 0.17 2.00 8.06 -2.91 -0.02 1.98 16 35 H 0.18 0.48 8.06 -2.91 -0.02 0.46 16 36 H 0.17 1.20 8.06 -2.91 -0.02 1.17 16 37 H 0.16 3.98 5.13 -2.91 -0.01 3.96 16 38 H 0.08 2.62 6.20 -2.39 -0.01 2.61 16 39 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 40 H 0.04 1.79 7.93 -2.39 -0.02 1.77 16 41 H 0.00 0.11 7.74 -2.39 -0.02 0.09 16 42 H 0.25 13.96 8.31 -92.71 -0.77 13.19 16 43 H 0.06 2.91 6.07 -2.39 -0.01 2.89 16 44 H 0.01 0.30 6.94 -2.39 -0.02 0.28 16 45 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 46 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 Total: -1.00 -68.24 361.31 3.23 -65.01 By element: Atomic # 1 Polarization: 21.76 SS G_CDS: 0.52 Total: 22.28 kcal Atomic # 6 Polarization: -1.27 SS G_CDS: 5.54 Total: 4.27 kcal Atomic # 7 Polarization: -116.33 SS G_CDS: -4.83 Total: -121.15 kcal Atomic # 8 Polarization: -16.69 SS G_CDS: -0.04 Total: -16.73 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.32 kcal Total: -68.24 3.23 -65.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045570484.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.158 kcal (2) G-P(sol) polarization free energy of solvation -68.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.011 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds