Wall clock time and date at job start Tue Mar 31 2020 23:13:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46505 * 109.45727 * 2 1 4 4 C 1.34776 * 120.00007 * 60.00301 * 3 2 1 5 5 O 1.21545 * 120.00225 * 359.97438 * 4 3 2 6 6 C 1.47864 * 119.99738 * 180.02562 * 4 3 2 7 7 C 1.40622 * 119.75633 * 359.97438 * 6 4 3 8 8 C 1.35734 * 120.83298 * 179.97438 * 7 6 4 9 9 C 1.40703 * 120.08584 * 0.02562 * 8 7 6 10 10 N 1.33791 * 120.86254 * 179.97438 * 9 8 7 11 11 C 1.31332 * 119.76610 * 179.97438 * 10 9 8 12 12 C 1.39754 * 120.70833 * 0.04566 * 11 10 9 13 13 N 1.31276 * 120.67423 * 359.97382 * 12 11 10 14 14 C 1.33821 * 119.73910 * 359.97438 * 13 12 11 15 15 C 1.38418 * 119.75471 * 179.97438 * 6 4 3 16 16 C 1.53037 * 109.46287 * 119.96871 * 2 1 3 17 17 C 1.53163 * 109.33237 * 181.38609 * 16 2 1 18 18 N 1.46928 * 108.76705 * 305.36185 * 17 16 2 19 19 C 1.36939 * 120.62807 * 233.62891 * 18 17 16 20 20 H 1.07999 * 119.99855 * 151.81079 * 19 18 17 21 21 C 1.38815 * 120.00195 * 331.80774 * 19 18 17 22 22 N 1.31616 * 119.99639 * 343.08199 * 21 19 18 23 23 Si 1.86793 * 119.99985 * 163.07956 * 21 19 18 24 24 H 1.48493 * 109.47507 * 0.02562 * 23 21 19 25 25 H 1.48504 * 109.47171 * 120.00415 * 23 21 19 26 26 H 1.48497 * 109.47247 * 239.99842 * 23 21 19 27 27 C 1.46928 * 118.74064 * 53.60217 * 18 17 16 28 28 C 1.53041 * 109.46335 * 240.02792 * 2 1 3 29 29 H 1.08993 * 109.46924 * 59.99925 * 1 2 3 30 30 H 1.09004 * 109.46839 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46822 * 299.99860 * 1 2 3 32 32 H 0.96997 * 119.99610 * 240.00074 * 3 2 1 33 33 H 1.07994 * 119.58246 * 359.72898 * 7 6 4 34 34 H 1.07997 * 119.95605 * 179.97438 * 8 7 6 35 35 H 1.07995 * 119.64202 * 180.02562 * 11 10 9 36 36 H 1.07999 * 119.66030 * 179.97438 * 12 11 10 37 37 H 1.07993 * 120.24960 * 0.02562 * 15 6 4 38 38 H 1.09000 * 109.50021 * 301.32649 * 16 2 1 39 39 H 1.09001 * 109.49595 * 61.42104 * 16 2 1 40 40 H 1.08997 * 109.59620 * 185.57278 * 17 16 2 41 41 H 1.09007 * 109.70762 * 65.20960 * 17 16 2 42 42 H 0.97003 * 119.99695 * 179.97438 * 22 21 19 43 43 H 1.09001 * 109.58358 * 186.60477 * 27 18 17 44 44 H 1.09004 * 109.70018 * 66.25334 * 27 18 17 45 45 H 1.09003 * 109.49235 * 298.58216 * 28 2 1 46 46 H 1.08998 * 109.49720 * 58.63943 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0180 1.3814 0.0000 4 6 1.6923 2.2112 1.0109 5 8 0.9933 1.8136 1.9223 6 6 2.1844 3.6055 1.0105 7 6 2.9923 4.0602 -0.0468 8 6 3.4556 5.3358 -0.0695 9 6 3.1301 6.2231 0.9730 10 7 3.5787 7.4835 0.9666 11 6 3.2613 8.2935 1.9504 12 6 2.4594 7.8532 3.0069 13 7 2.0073 6.6211 3.0361 14 6 2.3161 5.7770 2.0447 15 6 1.8463 4.4536 2.0509 16 6 2.0399 -0.7208 1.2500 17 6 3.5712 -0.6888 1.2646 18 7 4.0677 -1.2492 0.0004 19 6 4.9754 -2.2745 0.0005 20 1 5.0027 -2.9716 -0.8239 21 6 5.8604 -2.4179 1.0603 22 7 6.0656 -1.4142 1.8866 23 14 6.7600 -4.0352 1.3137 24 1 6.3575 -4.9965 0.2559 25 1 8.2250 -3.8036 1.2399 26 1 6.4133 -4.5910 2.6463 27 6 3.5714 -0.6889 -1.2640 28 6 2.0399 -0.7209 -1.2500 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 2.5756 1.6987 -0.7275 33 1 3.2508 3.3848 -0.8489 34 1 4.0755 5.6700 -0.8883 35 1 3.6241 9.3107 1.9430 36 1 2.2091 8.5336 3.8074 37 1 1.2259 4.1002 2.8612 38 1 1.6575 -0.2207 2.1398 39 1 1.6977 -1.7556 1.2383 40 1 3.9413 -1.2847 2.0988 41 1 3.9164 0.3399 1.3688 42 1 6.6838 -1.5144 2.6274 43 1 3.9417 -1.2850 -2.0981 44 1 3.9145 0.3403 -1.3696 45 1 1.6976 -1.7557 -1.2382 46 1 1.6570 -0.2212 -2.1398 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001045635682.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:13:09 Heat of formation + Delta-G solvation = 61.369152 kcal Electronic energy + Delta-G solvation = -29683.042307 eV Core-core repulsion = 25766.509791 eV Total energy + Delta-G solvation = -3916.532516 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.64584 -40.24228 -37.96119 -36.81666 -35.04587 -34.45907 -32.36676 -31.31263 -30.79301 -30.33223 -29.91232 -27.45105 -25.89909 -24.75851 -24.10009 -22.74359 -22.29770 -21.65304 -20.77019 -19.08687 -18.66890 -18.38515 -17.27324 -16.95433 -16.39802 -15.39195 -15.04857 -14.90380 -14.87334 -14.66293 -14.46466 -14.13119 -13.96372 -13.84050 -13.43729 -13.27374 -13.12137 -12.66006 -12.45196 -12.07226 -11.99249 -11.95630 -11.92468 -11.77820 -11.62087 -11.41515 -11.14524 -10.95798 -10.74291 -10.38917 -10.26279 -9.99870 -9.82670 -9.58994 -9.39891 -9.24948 -9.19795 -8.83017 -8.62617 -8.46589 -6.67254 -5.78825 -3.22259 -0.14485 0.18608 1.62042 2.21047 3.21757 3.32189 3.36781 3.44875 3.46556 3.73902 3.85397 3.89183 3.98791 4.48612 4.51076 4.58424 4.68135 4.80645 4.91033 5.11993 5.21968 5.33155 5.38095 5.47517 5.50521 5.58110 5.63951 5.80527 5.87778 5.92965 5.99173 6.01941 6.10155 6.16657 6.31762 6.35552 6.42565 6.50185 6.63816 6.70805 6.78379 6.89486 6.96549 7.03986 7.40509 7.42629 7.69943 7.78011 7.81100 8.42783 8.44685 9.20863 9.84239 10.40612 11.29000 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013943 B = 0.003045 C = 0.002769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2007.765248 B = 9192.255179 C =10110.741717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.184 3.816 3 N -0.701 5.701 4 C 0.560 3.440 5 O -0.529 6.529 6 C -0.105 4.105 7 C -0.069 4.069 8 C -0.087 4.087 9 C 0.091 3.909 10 N -0.427 5.427 11 C 0.080 3.920 12 C 0.071 3.929 13 N -0.416 5.416 14 C 0.070 3.930 15 C -0.017 4.017 16 C -0.152 4.152 17 C 0.177 3.823 18 N -0.591 5.591 19 C -0.254 4.254 20 H 0.065 0.935 21 C 0.003 3.997 22 N -0.900 5.900 23 Si 0.901 3.099 24 H -0.278 1.278 25 H -0.291 1.291 26 H -0.289 1.289 27 C 0.146 3.854 28 C -0.138 4.138 29 H 0.047 0.953 30 H 0.060 0.940 31 H 0.074 0.926 32 H 0.397 0.603 33 H 0.140 0.860 34 H 0.146 0.854 35 H 0.176 0.824 36 H 0.176 0.824 37 H 0.155 0.845 38 H 0.072 0.928 39 H 0.061 0.939 40 H 0.084 0.916 41 H 0.016 0.984 42 H 0.253 0.747 43 H 0.056 0.944 44 H 0.012 0.988 45 H 0.076 0.924 46 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.039 17.142 -3.715 19.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.099 3.901 3 N -0.352 5.352 4 C 0.346 3.654 5 O -0.407 6.407 6 C -0.110 4.110 7 C -0.089 4.089 8 C -0.107 4.107 9 C -0.032 4.032 10 N -0.141 5.141 11 C -0.095 4.095 12 C -0.105 4.105 13 N -0.130 5.130 14 C -0.054 4.054 15 C -0.037 4.037 16 C -0.192 4.192 17 C 0.051 3.949 18 N -0.313 5.313 19 C -0.384 4.384 20 H 0.083 0.917 21 C -0.196 4.196 22 N -0.544 5.544 23 Si 0.731 3.269 24 H -0.203 1.203 25 H -0.218 1.218 26 H -0.216 1.216 27 C 0.019 3.981 28 C -0.178 4.178 29 H 0.066 0.934 30 H 0.079 0.921 31 H 0.093 0.907 32 H 0.233 0.767 33 H 0.158 0.842 34 H 0.163 0.837 35 H 0.193 0.807 36 H 0.193 0.807 37 H 0.173 0.827 38 H 0.090 0.910 39 H 0.080 0.920 40 H 0.102 0.898 41 H 0.034 0.966 42 H 0.063 0.937 43 H 0.074 0.926 44 H 0.030 0.970 45 H 0.095 0.905 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -9.426 16.576 -3.053 19.312 hybrid contribution 0.960 -0.474 -0.093 1.075 sum -8.466 16.102 -3.146 18.462 Atomic orbital electron populations 1.22233 0.95242 1.02031 1.02395 1.20328 0.92687 0.79647 0.97422 1.46025 1.52540 1.12253 1.24415 1.17948 0.80533 0.84473 0.82481 1.90717 1.37982 1.76510 1.35459 1.20174 0.99931 0.94975 0.95966 1.21111 0.94649 0.95733 0.97447 1.20664 1.00083 0.92201 0.97718 1.19662 0.96097 0.92064 0.95416 1.68720 1.18346 1.02434 1.24637 1.24130 0.94531 1.00623 0.90249 1.24087 0.94465 0.93206 0.98753 1.68676 1.18074 1.03139 1.23115 1.19446 0.98258 0.95206 0.92453 1.21218 0.95722 0.89373 0.97417 1.22587 1.00824 0.99194 0.96550 1.20686 0.87211 0.96973 0.89981 1.44071 1.48331 1.39573 0.99363 1.19200 1.09670 1.02826 1.06674 0.91707 1.25050 0.97216 0.97366 0.99923 1.70047 1.37347 1.28936 1.18055 0.86253 0.79181 0.83702 0.77798 1.20271 1.21780 1.21566 1.20859 0.90424 0.96141 0.90715 1.22349 0.99700 1.00643 0.95063 0.93417 0.92091 0.90728 0.76721 0.84192 0.83662 0.80733 0.80696 0.82720 0.90975 0.92049 0.89779 0.96574 0.93714 0.92558 0.97015 0.90527 0.92556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.36 8.40 37.16 0.31 -2.04 16 2 C 0.18 3.01 0.66 -131.78 -0.09 2.92 16 3 N -0.70 -10.60 4.05 -48.49 -0.20 -10.80 16 4 C 0.56 8.99 7.19 -12.32 -0.09 8.90 16 5 O -0.53 -9.88 12.52 5.33 0.07 -9.81 16 6 C -0.11 -1.46 5.87 -104.99 -0.62 -2.08 16 7 C -0.07 -0.80 9.44 -39.58 -0.37 -1.17 16 8 C -0.09 -0.99 9.95 -39.55 -0.39 -1.38 16 9 C 0.09 1.16 6.59 -84.73 -0.56 0.60 16 10 N -0.43 -4.88 10.46 -10.74 -0.11 -4.99 16 11 C 0.08 0.65 11.21 -17.20 -0.19 0.46 16 12 C 0.07 0.60 11.21 -17.22 -0.19 0.41 16 13 N -0.42 -5.11 10.46 -10.81 -0.11 -5.23 16 14 C 0.07 0.94 6.58 -84.82 -0.56 0.38 16 15 C -0.02 -0.24 9.56 -38.69 -0.37 -0.61 16 16 C -0.15 -3.03 4.66 -26.63 -0.12 -3.15 16 17 C 0.18 4.24 5.04 -3.72 -0.02 4.22 16 18 N -0.59 -14.25 2.99 -172.33 -0.52 -14.77 16 19 C -0.25 -6.83 9.58 -15.06 -0.14 -6.98 16 20 H 0.07 1.71 7.88 -52.49 -0.41 1.30 16 21 C 0.00 0.09 4.92 -17.43 -0.09 0.01 16 22 N -0.90 -26.16 11.20 55.49 0.62 -25.54 16 23 Si 0.90 21.66 29.59 -169.99 -5.03 16.63 16 24 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 25 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 26 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 27 C 0.15 2.79 6.24 -3.71 -0.02 2.76 16 28 C -0.14 -2.17 4.96 -26.61 -0.13 -2.30 16 29 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.07 1.21 6.16 -51.93 -0.32 0.89 16 32 H 0.40 5.22 5.25 -40.82 -0.21 5.01 16 33 H 0.14 1.32 6.35 -52.49 -0.33 0.99 16 34 H 0.15 1.33 8.06 -52.49 -0.42 0.91 16 35 H 0.18 0.67 8.06 -52.49 -0.42 0.25 16 36 H 0.18 0.74 8.06 -52.49 -0.42 0.32 16 37 H 0.16 2.21 7.61 -52.49 -0.40 1.81 16 38 H 0.07 1.50 6.20 -51.93 -0.32 1.18 16 39 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 40 H 0.08 2.32 6.06 -51.93 -0.31 2.01 16 41 H 0.02 0.41 7.75 -51.93 -0.40 0.01 16 42 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 43 H 0.06 1.06 7.93 -51.93 -0.41 0.65 16 44 H 0.01 0.22 6.94 -51.93 -0.36 -0.14 16 45 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 46 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 LS Contribution 365.98 15.07 5.52 5.52 Total: -1.00 -33.45 365.98 -9.42 -42.87 By element: Atomic # 1 Polarization: 11.19 SS G_CDS: -6.01 Total: 5.18 kcal Atomic # 6 Polarization: 4.59 SS G_CDS: -3.65 Total: 0.94 kcal Atomic # 7 Polarization: -61.00 SS G_CDS: -0.32 Total: -61.32 kcal Atomic # 8 Polarization: -9.88 SS G_CDS: 0.07 Total: -9.81 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.03 Total: 16.63 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -33.45 -9.42 -42.87 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045635682.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.244 kcal (2) G-P(sol) polarization free energy of solvation -33.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.875 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds