Wall clock time and date at job start Tue Mar 31 2020 23:13:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46505 * 109.45727 * 2 1 4 4 C 1.34776 * 120.00007 * 60.00301 * 3 2 1 5 5 O 1.21545 * 120.00225 * 359.97438 * 4 3 2 6 6 C 1.47864 * 119.99738 * 180.02562 * 4 3 2 7 7 C 1.40622 * 119.75633 * 359.97438 * 6 4 3 8 8 C 1.35734 * 120.83298 * 179.97438 * 7 6 4 9 9 C 1.40703 * 120.08584 * 0.02562 * 8 7 6 10 10 N 1.33791 * 120.86254 * 179.97438 * 9 8 7 11 11 C 1.31332 * 119.76610 * 179.97438 * 10 9 8 12 12 C 1.39754 * 120.70833 * 0.04566 * 11 10 9 13 13 N 1.31276 * 120.67423 * 359.97382 * 12 11 10 14 14 C 1.33821 * 119.73910 * 359.97438 * 13 12 11 15 15 C 1.38418 * 119.75471 * 179.97438 * 6 4 3 16 16 C 1.53037 * 109.46287 * 119.96871 * 2 1 3 17 17 C 1.53163 * 109.33237 * 181.38609 * 16 2 1 18 18 N 1.46928 * 108.76705 * 305.36185 * 17 16 2 19 19 C 1.36939 * 120.62807 * 233.62891 * 18 17 16 20 20 H 1.07999 * 119.99855 * 151.81079 * 19 18 17 21 21 C 1.38815 * 120.00195 * 331.80774 * 19 18 17 22 22 N 1.31616 * 119.99639 * 343.08199 * 21 19 18 23 23 Si 1.86793 * 119.99985 * 163.07956 * 21 19 18 24 24 H 1.48493 * 109.47507 * 0.02562 * 23 21 19 25 25 H 1.48504 * 109.47171 * 120.00415 * 23 21 19 26 26 H 1.48497 * 109.47247 * 239.99842 * 23 21 19 27 27 C 1.46928 * 118.74064 * 53.60217 * 18 17 16 28 28 C 1.53041 * 109.46335 * 240.02792 * 2 1 3 29 29 H 1.08993 * 109.46924 * 59.99925 * 1 2 3 30 30 H 1.09004 * 109.46839 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46822 * 299.99860 * 1 2 3 32 32 H 0.96997 * 119.99610 * 240.00074 * 3 2 1 33 33 H 1.07994 * 119.58246 * 359.72898 * 7 6 4 34 34 H 1.07997 * 119.95605 * 179.97438 * 8 7 6 35 35 H 1.07995 * 119.64202 * 180.02562 * 11 10 9 36 36 H 1.07999 * 119.66030 * 179.97438 * 12 11 10 37 37 H 1.07993 * 120.24960 * 0.02562 * 15 6 4 38 38 H 1.09000 * 109.50021 * 301.32649 * 16 2 1 39 39 H 1.09001 * 109.49595 * 61.42104 * 16 2 1 40 40 H 1.08997 * 109.59620 * 185.57278 * 17 16 2 41 41 H 1.09007 * 109.70762 * 65.20960 * 17 16 2 42 42 H 0.97003 * 119.99695 * 179.97438 * 22 21 19 43 43 H 1.09001 * 109.58358 * 186.60477 * 27 18 17 44 44 H 1.09004 * 109.70018 * 66.25334 * 27 18 17 45 45 H 1.09003 * 109.49235 * 298.58216 * 28 2 1 46 46 H 1.08998 * 109.49720 * 58.63943 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0180 1.3814 0.0000 4 6 1.6923 2.2112 1.0109 5 8 0.9933 1.8136 1.9223 6 6 2.1844 3.6055 1.0105 7 6 2.9923 4.0602 -0.0468 8 6 3.4556 5.3358 -0.0695 9 6 3.1301 6.2231 0.9730 10 7 3.5787 7.4835 0.9666 11 6 3.2613 8.2935 1.9504 12 6 2.4594 7.8532 3.0069 13 7 2.0073 6.6211 3.0361 14 6 2.3161 5.7770 2.0447 15 6 1.8463 4.4536 2.0509 16 6 2.0399 -0.7208 1.2500 17 6 3.5712 -0.6888 1.2646 18 7 4.0677 -1.2492 0.0004 19 6 4.9754 -2.2745 0.0005 20 1 5.0027 -2.9716 -0.8239 21 6 5.8604 -2.4179 1.0603 22 7 6.0656 -1.4142 1.8866 23 14 6.7600 -4.0352 1.3137 24 1 6.3575 -4.9965 0.2559 25 1 8.2250 -3.8036 1.2399 26 1 6.4133 -4.5910 2.6463 27 6 3.5714 -0.6889 -1.2640 28 6 2.0399 -0.7209 -1.2500 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 2.5756 1.6987 -0.7275 33 1 3.2508 3.3848 -0.8489 34 1 4.0755 5.6700 -0.8883 35 1 3.6241 9.3107 1.9430 36 1 2.2091 8.5336 3.8074 37 1 1.2259 4.1002 2.8612 38 1 1.6575 -0.2207 2.1398 39 1 1.6977 -1.7556 1.2383 40 1 3.9413 -1.2847 2.0988 41 1 3.9164 0.3399 1.3688 42 1 6.6838 -1.5144 2.6274 43 1 3.9417 -1.2850 -2.0981 44 1 3.9145 0.3403 -1.3696 45 1 1.6976 -1.7557 -1.2382 46 1 1.6570 -0.2212 -2.1398 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001045635682.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:13:08 Heat of formation + Delta-G solvation = 38.957759 kcal Electronic energy + Delta-G solvation = -29684.014138 eV Core-core repulsion = 25766.509791 eV Total energy + Delta-G solvation = -3917.504347 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.50406 -41.51469 -39.24534 -37.96387 -36.17969 -35.84075 -33.82675 -32.84266 -31.71234 -31.61637 -31.40202 -29.07816 -26.81412 -25.91215 -25.59904 -23.97836 -23.70545 -22.84701 -22.25661 -20.38302 -19.82939 -19.37601 -18.71588 -18.16070 -17.42285 -16.84680 -16.43370 -16.28062 -15.93404 -15.72181 -15.66278 -15.40910 -15.17448 -15.13017 -14.91067 -14.79266 -14.58874 -14.03810 -13.57361 -13.30622 -13.20636 -13.05361 -12.94421 -12.85884 -12.80350 -12.77108 -12.75162 -12.58046 -12.52223 -12.19438 -11.95753 -11.75359 -11.40301 -11.31014 -10.63519 -10.53884 -10.18609 -10.16602 -9.97040 -9.71984 -8.65502 -7.86375 -5.31667 -1.02456 -0.64315 0.71201 1.30174 1.44306 1.47083 1.56728 2.05351 2.24674 2.51005 2.92877 2.98228 3.09994 3.18016 3.28909 3.51611 3.72448 3.76137 3.81284 3.91626 3.98820 4.07562 4.11288 4.15232 4.41846 4.50236 4.63223 4.69213 4.70140 4.73051 4.78826 4.89196 4.91718 4.97041 5.02108 5.05890 5.13713 5.15941 5.23349 5.36207 5.38907 5.48768 5.51456 5.62299 5.66688 5.77220 6.18781 6.39342 6.57417 6.64824 7.15341 7.20489 7.88235 8.39329 9.19273 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013943 B = 0.003045 C = 0.002769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2007.765248 B = 9192.255179 C =10110.741717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.186 3.814 3 N -0.695 5.695 4 C 0.557 3.443 5 O -0.563 6.563 6 C -0.118 4.118 7 C -0.072 4.072 8 C -0.083 4.083 9 C 0.075 3.925 10 N -0.449 5.449 11 C 0.097 3.903 12 C 0.085 3.915 13 N -0.452 5.452 14 C 0.048 3.952 15 C -0.031 4.031 16 C -0.140 4.140 17 C 0.193 3.807 18 N -0.607 5.607 19 C -0.256 4.256 20 H 0.071 0.929 21 C -0.054 4.054 22 N -0.935 5.935 23 Si 0.963 3.037 24 H -0.263 1.263 25 H -0.293 1.293 26 H -0.296 1.296 27 C 0.139 3.861 28 C -0.124 4.124 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.054 0.946 32 H 0.408 0.592 33 H 0.161 0.839 34 H 0.168 0.832 35 H 0.225 0.775 36 H 0.221 0.779 37 H 0.138 0.862 38 H 0.056 0.944 39 H 0.057 0.943 40 H 0.039 0.961 41 H -0.008 1.008 42 H 0.246 0.754 43 H 0.061 0.939 44 H 0.025 0.975 45 H 0.075 0.925 46 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.365 19.025 -5.850 21.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.101 3.899 3 N -0.347 5.347 4 C 0.344 3.656 5 O -0.443 6.443 6 C -0.123 4.123 7 C -0.092 4.092 8 C -0.102 4.102 9 C -0.047 4.047 10 N -0.163 5.163 11 C -0.080 4.080 12 C -0.092 4.092 13 N -0.167 5.167 14 C -0.073 4.073 15 C -0.052 4.052 16 C -0.180 4.180 17 C 0.067 3.933 18 N -0.331 5.331 19 C -0.387 4.387 20 H 0.089 0.911 21 C -0.249 4.249 22 N -0.582 5.582 23 Si 0.791 3.209 24 H -0.187 1.187 25 H -0.220 1.220 26 H -0.223 1.223 27 C 0.013 3.987 28 C -0.163 4.163 29 H 0.091 0.909 30 H 0.089 0.911 31 H 0.073 0.927 32 H 0.246 0.754 33 H 0.179 0.821 34 H 0.186 0.814 35 H 0.241 0.759 36 H 0.237 0.763 37 H 0.156 0.844 38 H 0.075 0.925 39 H 0.076 0.924 40 H 0.057 0.943 41 H 0.010 0.990 42 H 0.055 0.945 43 H 0.080 0.920 44 H 0.042 0.958 45 H 0.094 0.906 46 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -9.767 18.429 -5.264 21.511 hybrid contribution 1.073 -0.815 0.648 1.495 sum -8.694 17.614 -4.616 20.178 Atomic orbital electron populations 1.22124 0.93361 1.02798 1.02673 1.20260 0.94022 0.79874 0.95736 1.45929 1.52502 1.11632 1.24589 1.18305 0.79906 0.85364 0.81993 1.90694 1.39592 1.77362 1.36693 1.20050 1.01309 0.93742 0.97192 1.21243 0.94287 0.96401 0.97251 1.20941 0.99568 0.91779 0.97894 1.19867 0.96256 0.93091 0.95504 1.68809 1.19230 1.02125 1.26148 1.25022 0.92421 1.01962 0.88578 1.24961 0.92432 0.92274 0.99560 1.68691 1.19742 1.04774 1.23453 1.19459 0.99226 0.95125 0.93537 1.21161 0.96296 0.90398 0.97309 1.22384 0.97731 0.99474 0.98416 1.20306 0.89554 0.94465 0.88980 1.44284 1.48189 1.39605 1.00984 1.19565 1.09189 1.03513 1.06401 0.91133 1.25790 0.98721 1.00161 1.00209 1.70210 1.38460 1.30824 1.18672 0.85273 0.77691 0.80430 0.77473 1.18695 1.22029 1.22330 1.21104 0.92704 0.96495 0.88364 1.22227 0.96776 1.01108 0.96203 0.90887 0.91073 0.92691 0.75426 0.82125 0.81424 0.75862 0.76255 0.84441 0.92504 0.92416 0.94266 0.98967 0.94502 0.92010 0.95761 0.90600 0.88189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.18 8.40 71.98 0.60 -3.58 16 2 C 0.19 5.90 0.66 3.63 0.00 5.90 16 3 N -0.69 -20.64 4.05 -425.62 -1.72 -22.37 16 4 C 0.56 18.49 7.19 86.79 0.62 19.11 16 5 O -0.56 -22.25 12.52 -3.86 -0.05 -22.30 16 6 C -0.12 -3.41 5.87 -20.10 -0.12 -3.53 16 7 C -0.07 -1.63 9.44 22.27 0.21 -1.42 16 8 C -0.08 -1.79 9.95 22.29 0.22 -1.57 16 9 C 0.08 1.85 6.59 40.32 0.27 2.12 16 10 N -0.45 -9.28 10.46 -187.89 -1.96 -11.24 16 11 C 0.10 1.24 11.21 85.13 0.95 2.19 16 12 C 0.08 1.19 11.21 85.14 0.95 2.15 16 13 N -0.45 -10.92 10.46 -188.12 -1.97 -12.89 16 14 C 0.05 1.32 6.58 40.25 0.27 1.59 16 15 C -0.03 -0.93 9.56 22.85 0.22 -0.71 16 16 C -0.14 -5.75 4.66 30.66 0.14 -5.61 16 17 C 0.19 9.63 5.04 86.35 0.44 10.06 16 18 N -0.61 -29.48 2.99 -699.14 -2.09 -31.57 16 19 C -0.26 -13.86 9.58 84.03 0.81 -13.06 16 20 H 0.07 3.67 7.88 -2.91 -0.02 3.65 16 21 C -0.05 -3.02 4.92 84.86 0.42 -2.60 16 22 N -0.94 -56.58 11.20 21.65 0.24 -56.34 16 23 Si 0.96 45.39 29.59 68.60 2.03 47.42 16 24 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 25 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 26 H -0.30 -14.17 7.11 99.48 0.71 -13.46 16 27 C 0.14 5.06 6.24 86.36 0.54 5.60 16 28 C -0.12 -3.55 4.96 30.67 0.15 -3.40 16 29 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 30 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 31 H 0.05 1.77 6.16 -2.39 -0.01 1.75 16 32 H 0.41 10.09 5.25 -92.71 -0.49 9.60 16 33 H 0.16 2.80 6.35 -2.91 -0.02 2.78 16 34 H 0.17 2.75 8.06 -2.91 -0.02 2.73 16 35 H 0.23 0.50 8.06 -2.91 -0.02 0.48 16 36 H 0.22 0.90 8.06 -2.91 -0.02 0.88 16 37 H 0.14 4.41 7.61 -2.91 -0.02 4.39 16 38 H 0.06 2.50 6.20 -2.39 -0.01 2.48 16 39 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 40 H 0.04 2.29 6.06 -2.39 -0.01 2.28 16 41 H -0.01 -0.42 7.75 -2.38 -0.02 -0.43 16 42 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16 43 H 0.06 2.19 7.93 -2.39 -0.02 2.17 16 44 H 0.02 0.84 6.94 -2.38 -0.02 0.83 16 45 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 46 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 Total: -1.00 -77.80 365.98 1.70 -76.09 By element: Atomic # 1 Polarization: 19.42 SS G_CDS: 0.53 Total: 19.96 kcal Atomic # 6 Polarization: 6.54 SS G_CDS: 6.70 Total: 13.24 kcal Atomic # 7 Polarization: -126.90 SS G_CDS: -7.51 Total: -134.41 kcal Atomic # 8 Polarization: -22.25 SS G_CDS: -0.05 Total: -22.30 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.42 kcal Total: -77.80 1.70 -76.09 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045635682.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.052 kcal (2) G-P(sol) polarization free energy of solvation -77.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.094 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds