Wall clock time and date at job start Tue Mar 31 2020 23:10:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46500 * 110.91697 * 2 1 4 4 C 1.34773 * 119.99841 * 56.09677 * 3 2 1 5 5 O 1.21573 * 120.00241 * 0.02562 * 4 3 2 6 6 C 1.47662 * 119.99798 * 179.97438 * 4 3 2 7 7 C 1.39708 * 120.07864 * 359.72808 * 6 4 3 8 8 C 1.37732 * 119.92200 * 179.71368 * 7 6 4 9 9 C 1.39050 * 120.07355 * 0.56150 * 8 7 6 10 10 N 1.39831 * 119.91882 * 179.73868 * 9 8 7 11 11 C 1.35836 * 126.10406 * 359.69288 * 10 9 8 12 12 C 1.35290 * 107.61575 * 179.84076 * 11 10 9 13 13 C 1.39956 * 107.96756 * 0.42198 * 12 11 10 14 14 N 1.30822 * 108.36708 * 359.73851 * 13 12 11 15 15 C 1.39061 * 120.16313 * 359.71610 * 9 8 7 16 16 C 1.37719 * 120.07150 * 0.02562 * 15 9 8 17 17 C 1.55157 * 111.00143 * 236.09886 * 2 1 3 18 18 C 1.54325 * 102.94184 * 206.42607 * 17 2 1 19 19 N 1.47022 * 107.26948 * 22.19107 * 18 17 2 20 20 C 1.36945 * 125.64832 * 181.02381 * 19 18 17 21 21 H 1.07997 * 119.99756 * 180.02562 * 20 19 18 22 22 C 1.38805 * 119.99878 * 0.02562 * 20 19 18 23 23 N 1.31624 * 120.00257 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99929 * 179.97438 * 22 20 19 25 25 H 1.48496 * 109.47187 * 179.97438 * 24 22 20 26 26 H 1.48494 * 109.47141 * 300.00154 * 24 22 20 27 27 H 1.48498 * 109.47018 * 60.00200 * 24 22 20 28 28 C 1.47423 * 108.70390 * 1.29074 * 19 18 17 29 29 H 1.08996 * 109.47690 * 183.89832 * 1 2 3 30 30 H 1.08999 * 109.46882 * 303.90238 * 1 2 3 31 31 H 1.09005 * 109.47260 * 63.90076 * 1 2 3 32 32 H 0.97003 * 119.99983 * 236.09806 * 3 2 1 33 33 H 1.08001 * 120.04383 * 0.02562 * 7 6 4 34 34 H 1.08000 * 119.96059 * 180.25190 * 8 7 6 35 35 H 1.07999 * 126.19487 * 359.96217 * 11 10 9 36 36 H 1.08004 * 126.01533 * 180.12515 * 12 11 10 37 37 H 1.07997 * 125.81363 * 179.73791 * 13 12 11 38 38 H 1.07998 * 119.96348 * 180.02562 * 15 9 8 39 39 H 1.08001 * 120.03708 * 179.97438 * 16 15 9 40 40 H 1.09000 * 110.72140 * 88.06437 * 17 2 1 41 41 H 1.08998 * 110.72520 * 324.78756 * 17 2 1 42 42 H 1.09002 * 109.88274 * 262.77538 * 18 17 2 43 43 H 1.08996 * 109.88444 * 141.60894 * 18 17 2 44 44 H 0.97001 * 119.99885 * 179.97438 * 23 22 20 45 45 H 1.09000 * 110.37068 * 94.48354 * 28 19 18 46 46 H 1.09005 * 110.36651 * 216.80519 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0530 1.3685 0.0000 4 6 1.6855 2.2303 0.9687 5 8 0.9202 1.8721 1.8429 6 6 2.2131 3.6095 0.9691 7 6 3.0978 4.0209 -0.0308 8 6 3.5834 5.3098 -0.0308 9 6 3.2031 6.1976 0.9695 10 7 3.7023 7.5038 0.9695 11 6 4.5644 8.0312 0.0619 12 6 4.7944 9.3169 0.4146 13 6 4.0608 9.5837 1.5763 14 7 3.4073 8.5003 1.9091 15 6 2.3272 5.7899 1.9697 16 6 1.8336 4.5042 1.9728 17 6 2.0861 -0.8079 -1.2023 18 6 3.4674 -1.2742 -0.6961 19 7 3.4270 -1.2431 0.7733 20 6 4.4640 -1.5668 1.6072 21 1 4.3332 -1.5120 2.6778 22 6 5.6830 -1.9654 1.0763 23 7 5.8425 -2.0318 -0.2285 24 14 7.0977 -2.4063 2.2138 25 1 8.2800 -2.7972 1.4048 26 1 7.4398 -1.2322 3.0562 27 1 6.6975 -3.5406 3.0847 28 6 2.0835 -0.8120 1.2003 29 1 -0.3634 -1.0252 0.0699 30 1 -0.3633 0.5732 0.8529 31 1 -0.3634 0.4521 -0.9229 32 1 2.6639 1.6542 -0.6973 33 1 3.3968 3.3307 -0.8058 34 1 4.2642 5.6297 -0.8058 35 1 4.9879 7.5178 -0.7887 36 1 5.4354 10.0132 -0.1056 37 1 4.0380 10.5238 2.1074 38 1 2.0336 6.4822 2.7448 39 1 1.1537 4.1880 2.7500 40 1 2.1922 -0.1699 -2.0797 41 1 1.4467 -1.6632 -1.4210 42 1 4.2426 -0.5999 -1.0600 43 1 3.6649 -2.2894 -1.0401 44 1 6.6945 -2.3100 -0.5994 45 1 1.4523 -1.6782 1.3988 46 1 2.1515 -0.1802 2.0860 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046378375.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:10:29 Heat of formation + Delta-G solvation = 110.080990 kcal Electronic energy + Delta-G solvation = -28952.060628 eV Core-core repulsion = 25037.640415 eV Total energy + Delta-G solvation = -3914.420212 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.78323 -40.24986 -38.78968 -37.15123 -34.03860 -33.76791 -32.14949 -31.36134 -30.39278 -30.19523 -29.09016 -28.60859 -25.67295 -24.61278 -23.62973 -23.31361 -21.80546 -20.86638 -20.54713 -20.14063 -19.04436 -18.67243 -17.71585 -16.71856 -15.84610 -15.55774 -15.48540 -15.15784 -14.78470 -14.66905 -14.61014 -14.13325 -13.92152 -13.75379 -13.68051 -13.31780 -13.05165 -12.94715 -12.78876 -12.52701 -12.02600 -11.93318 -11.82336 -11.66358 -11.47675 -11.00344 -10.90907 -10.87250 -10.56482 -10.41188 -10.36505 -10.11821 -10.02874 -9.66424 -9.47737 -9.34861 -9.32419 -8.69782 -8.55868 -8.29124 -6.80732 -5.71272 -3.03120 0.31475 1.08286 1.71376 2.04522 2.43977 2.98226 3.39739 3.41641 3.45275 3.46697 3.81172 4.12336 4.37195 4.50855 4.57374 4.61971 4.75786 4.93872 5.05822 5.12071 5.20330 5.33900 5.36285 5.38345 5.46637 5.56985 5.61277 5.69732 5.72071 5.87888 5.94011 6.01937 6.11137 6.13942 6.17973 6.28218 6.35234 6.38915 6.39589 6.53371 6.68341 6.79704 6.84122 7.10226 7.27534 7.53096 7.54875 7.78856 7.86012 8.25670 8.50927 9.23302 9.83237 10.49064 11.40708 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011442 B = 0.002903 C = 0.002532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2446.581264 B = 9643.221817 C =11055.047980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.157 3.843 3 N -0.694 5.694 4 C 0.561 3.439 5 O -0.536 6.536 6 C -0.134 4.134 7 C -0.055 4.055 8 C -0.148 4.148 9 C 0.177 3.823 10 N -0.325 5.325 11 C 0.054 3.946 12 C -0.261 4.261 13 C 0.054 3.946 14 N -0.288 5.288 15 C -0.129 4.129 16 C -0.036 4.036 17 C -0.147 4.147 18 C 0.177 3.823 19 N -0.603 5.603 20 C -0.222 4.222 21 H 0.076 0.924 22 C -0.009 4.009 23 N -0.925 5.925 24 Si 0.910 3.090 25 H -0.290 1.290 26 H -0.286 1.286 27 H -0.285 1.285 28 C 0.133 3.867 29 H 0.063 0.937 30 H 0.079 0.921 31 H 0.049 0.951 32 H 0.397 0.603 33 H 0.139 0.861 34 H 0.135 0.865 35 H 0.180 0.820 36 H 0.155 0.845 37 H 0.190 0.810 38 H 0.142 0.858 39 H 0.146 0.854 40 H 0.064 0.936 41 H 0.074 0.926 42 H 0.045 0.955 43 H 0.044 0.956 44 H 0.251 0.749 45 H 0.027 0.973 46 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.036 19.742 -4.357 21.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.070 3.930 3 N -0.344 5.344 4 C 0.347 3.653 5 O -0.415 6.415 6 C -0.138 4.138 7 C -0.075 4.075 8 C -0.169 4.169 9 C 0.084 3.916 10 N -0.101 5.101 11 C -0.087 4.087 12 C -0.290 4.290 13 C -0.133 4.133 14 N -0.106 5.106 15 C -0.149 4.149 16 C -0.055 4.055 17 C -0.186 4.186 18 C 0.052 3.948 19 N -0.329 5.329 20 C -0.350 4.350 21 H 0.093 0.907 22 C -0.205 4.205 23 N -0.573 5.573 24 Si 0.741 3.259 25 H -0.216 1.216 26 H -0.213 1.213 27 H -0.212 1.212 28 C 0.006 3.994 29 H 0.082 0.918 30 H 0.097 0.903 31 H 0.068 0.932 32 H 0.233 0.767 33 H 0.156 0.844 34 H 0.153 0.847 35 H 0.197 0.803 36 H 0.172 0.828 37 H 0.207 0.793 38 H 0.160 0.840 39 H 0.164 0.836 40 H 0.082 0.918 41 H 0.092 0.908 42 H 0.063 0.937 43 H 0.062 0.938 44 H 0.062 0.938 45 H 0.045 0.955 46 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -7.164 18.786 -2.944 20.320 hybrid contribution 1.962 0.305 -0.475 2.041 sum -5.202 19.090 -3.420 20.080 Atomic orbital electron populations 1.22046 0.94127 1.02472 1.02547 1.21541 0.92763 0.80480 0.98196 1.45722 1.48214 1.11850 1.28606 1.17988 0.81077 0.84445 0.81745 1.90713 1.35961 1.78219 1.36599 1.20174 1.00862 0.95034 0.97714 1.21168 0.94103 0.94838 0.97356 1.20682 1.03569 0.93461 0.99168 1.17715 0.96413 0.80629 0.96857 1.46027 1.34812 1.08674 1.20549 1.22842 0.94558 0.95181 0.96155 1.21637 1.09248 0.96617 1.01453 1.24109 0.95308 0.97582 0.96323 1.77446 1.23808 0.96836 1.12520 1.20832 0.98259 0.96953 0.98868 1.21181 0.96589 0.91054 0.96694 1.23242 1.00537 0.98960 0.95864 1.21158 0.89932 0.99953 0.83716 1.44440 1.07654 1.79052 1.01786 1.19015 0.89378 1.37632 0.88977 0.90657 1.24751 0.97732 1.01996 0.96011 1.69935 1.24200 1.54051 1.09156 0.86217 0.81868 0.78311 0.79511 1.21630 1.21266 1.21199 1.21925 0.87601 0.94877 0.95020 0.91847 0.90259 0.93212 0.76749 0.84352 0.84696 0.80287 0.82755 0.79335 0.83993 0.83599 0.91766 0.90763 0.93671 0.93804 0.93834 0.95543 0.93157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.34 8.59 37.16 0.32 -2.02 16 2 C 0.16 2.73 0.82 -129.55 -0.11 2.62 16 3 N -0.69 -11.12 5.14 -46.50 -0.24 -11.35 16 4 C 0.56 9.26 7.15 -12.41 -0.09 9.17 16 5 O -0.54 -10.24 13.17 5.30 0.07 -10.17 16 6 C -0.13 -1.85 5.88 -104.95 -0.62 -2.47 16 7 C -0.06 -0.63 9.53 -39.22 -0.37 -1.00 16 8 C -0.15 -1.53 9.44 -39.47 -0.37 -1.90 16 9 C 0.18 2.08 6.69 -83.60 -0.56 1.52 16 10 N -0.32 -3.70 3.81 -10.55 -0.04 -3.74 16 11 C 0.05 0.47 10.81 -16.83 -0.18 0.29 16 12 C -0.26 -2.03 10.80 -39.99 -0.43 -2.46 16 13 C 0.05 0.48 12.02 -17.34 -0.21 0.27 16 14 N -0.29 -3.40 11.85 30.64 0.36 -3.04 16 15 C -0.13 -1.57 9.64 -39.47 -0.38 -1.95 16 16 C -0.04 -0.46 9.58 -39.22 -0.38 -0.84 16 17 C -0.15 -2.55 5.97 -24.90 -0.15 -2.69 16 18 C 0.18 4.09 5.36 -3.06 -0.02 4.08 16 19 N -0.60 -15.28 3.39 -169.94 -0.58 -15.86 16 20 C -0.22 -6.24 10.28 -15.06 -0.15 -6.39 16 21 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 22 C -0.01 -0.26 5.49 -17.43 -0.10 -0.35 16 23 N -0.93 -26.68 10.31 55.49 0.57 -26.10 16 24 Si 0.91 22.31 29.55 -169.99 -5.02 17.29 16 25 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 26 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 27 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 28 C 0.13 2.89 6.18 -2.41 -0.01 2.87 16 29 H 0.06 0.90 8.07 -51.93 -0.42 0.49 16 30 H 0.08 1.32 5.92 -51.93 -0.31 1.01 16 31 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.40 5.58 6.53 -40.82 -0.27 5.32 16 33 H 0.14 1.35 6.39 -52.49 -0.34 1.01 16 34 H 0.14 1.00 6.73 -52.49 -0.35 0.65 16 35 H 0.18 0.98 7.04 -52.49 -0.37 0.61 16 36 H 0.15 0.78 8.06 -52.48 -0.42 0.35 16 37 H 0.19 0.97 8.06 -52.49 -0.42 0.55 16 38 H 0.14 1.64 7.68 -52.49 -0.40 1.24 16 39 H 0.15 1.85 7.64 -52.49 -0.40 1.45 16 40 H 0.06 0.94 8.09 -51.93 -0.42 0.52 16 41 H 0.07 1.20 8.04 -51.93 -0.42 0.79 16 42 H 0.05 1.13 7.38 -51.93 -0.38 0.75 16 43 H 0.04 1.14 7.51 -51.93 -0.39 0.75 16 44 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 45 H 0.03 0.58 7.99 -51.93 -0.41 0.16 16 46 H 0.05 1.18 6.88 -51.93 -0.36 0.82 16 LS Contribution 375.05 15.07 5.65 5.65 Total: -1.00 -34.18 375.05 -9.08 -43.26 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: -6.05 Total: 5.32 kcal Atomic # 6 Polarization: 2.55 SS G_CDS: -3.81 Total: -1.26 kcal Atomic # 7 Polarization: -60.17 SS G_CDS: 0.08 Total: -60.09 kcal Atomic # 8 Polarization: -10.24 SS G_CDS: 0.07 Total: -10.17 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -34.18 -9.08 -43.26 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046378375.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.344 kcal (2) G-P(sol) polarization free energy of solvation -34.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.263 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds