Wall clock time and date at job start Tue Mar 31 2020 23:10:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46500 * 110.91697 * 2 1 4 4 C 1.34773 * 119.99841 * 56.09677 * 3 2 1 5 5 O 1.21573 * 120.00241 * 0.02562 * 4 3 2 6 6 C 1.47662 * 119.99798 * 179.97438 * 4 3 2 7 7 C 1.39708 * 120.07864 * 359.72808 * 6 4 3 8 8 C 1.37732 * 119.92200 * 179.71368 * 7 6 4 9 9 C 1.39050 * 120.07355 * 0.56150 * 8 7 6 10 10 N 1.39831 * 119.91882 * 179.73868 * 9 8 7 11 11 C 1.35836 * 126.10406 * 359.69288 * 10 9 8 12 12 C 1.35290 * 107.61575 * 179.84076 * 11 10 9 13 13 C 1.39956 * 107.96756 * 0.42198 * 12 11 10 14 14 N 1.30822 * 108.36708 * 359.73851 * 13 12 11 15 15 C 1.39061 * 120.16313 * 359.71610 * 9 8 7 16 16 C 1.37719 * 120.07150 * 0.02562 * 15 9 8 17 17 C 1.55157 * 111.00143 * 236.09886 * 2 1 3 18 18 C 1.54325 * 102.94184 * 206.42607 * 17 2 1 19 19 N 1.47022 * 107.26948 * 22.19107 * 18 17 2 20 20 C 1.36945 * 125.64832 * 181.02381 * 19 18 17 21 21 H 1.07997 * 119.99756 * 180.02562 * 20 19 18 22 22 C 1.38805 * 119.99878 * 0.02562 * 20 19 18 23 23 N 1.31624 * 120.00257 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99929 * 179.97438 * 22 20 19 25 25 H 1.48496 * 109.47187 * 179.97438 * 24 22 20 26 26 H 1.48494 * 109.47141 * 300.00154 * 24 22 20 27 27 H 1.48498 * 109.47018 * 60.00200 * 24 22 20 28 28 C 1.47423 * 108.70390 * 1.29074 * 19 18 17 29 29 H 1.08996 * 109.47690 * 183.89832 * 1 2 3 30 30 H 1.08999 * 109.46882 * 303.90238 * 1 2 3 31 31 H 1.09005 * 109.47260 * 63.90076 * 1 2 3 32 32 H 0.97003 * 119.99983 * 236.09806 * 3 2 1 33 33 H 1.08001 * 120.04383 * 0.02562 * 7 6 4 34 34 H 1.08000 * 119.96059 * 180.25190 * 8 7 6 35 35 H 1.07999 * 126.19487 * 359.96217 * 11 10 9 36 36 H 1.08004 * 126.01533 * 180.12515 * 12 11 10 37 37 H 1.07997 * 125.81363 * 179.73791 * 13 12 11 38 38 H 1.07998 * 119.96348 * 180.02562 * 15 9 8 39 39 H 1.08001 * 120.03708 * 179.97438 * 16 15 9 40 40 H 1.09000 * 110.72140 * 88.06437 * 17 2 1 41 41 H 1.08998 * 110.72520 * 324.78756 * 17 2 1 42 42 H 1.09002 * 109.88274 * 262.77538 * 18 17 2 43 43 H 1.08996 * 109.88444 * 141.60894 * 18 17 2 44 44 H 0.97001 * 119.99885 * 179.97438 * 23 22 20 45 45 H 1.09000 * 110.37068 * 94.48354 * 28 19 18 46 46 H 1.09005 * 110.36651 * 216.80519 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0530 1.3685 0.0000 4 6 1.6855 2.2303 0.9687 5 8 0.9202 1.8721 1.8429 6 6 2.2131 3.6095 0.9691 7 6 3.0978 4.0209 -0.0308 8 6 3.5834 5.3098 -0.0308 9 6 3.2031 6.1976 0.9695 10 7 3.7023 7.5038 0.9695 11 6 4.5644 8.0312 0.0619 12 6 4.7944 9.3169 0.4146 13 6 4.0608 9.5837 1.5763 14 7 3.4073 8.5003 1.9091 15 6 2.3272 5.7899 1.9697 16 6 1.8336 4.5042 1.9728 17 6 2.0861 -0.8079 -1.2023 18 6 3.4674 -1.2742 -0.6961 19 7 3.4270 -1.2431 0.7733 20 6 4.4640 -1.5668 1.6072 21 1 4.3332 -1.5120 2.6778 22 6 5.6830 -1.9654 1.0763 23 7 5.8425 -2.0318 -0.2285 24 14 7.0977 -2.4063 2.2138 25 1 8.2800 -2.7972 1.4048 26 1 7.4398 -1.2322 3.0562 27 1 6.6975 -3.5406 3.0847 28 6 2.0835 -0.8120 1.2003 29 1 -0.3634 -1.0252 0.0699 30 1 -0.3633 0.5732 0.8529 31 1 -0.3634 0.4521 -0.9229 32 1 2.6639 1.6542 -0.6973 33 1 3.3968 3.3307 -0.8058 34 1 4.2642 5.6297 -0.8058 35 1 4.9879 7.5178 -0.7887 36 1 5.4354 10.0132 -0.1056 37 1 4.0380 10.5238 2.1074 38 1 2.0336 6.4822 2.7448 39 1 1.1537 4.1880 2.7500 40 1 2.1922 -0.1699 -2.0797 41 1 1.4467 -1.6632 -1.4210 42 1 4.2426 -0.5999 -1.0600 43 1 3.6649 -2.2894 -1.0401 44 1 6.6945 -2.3100 -0.5994 45 1 1.4523 -1.6782 1.3988 46 1 2.1515 -0.1802 2.0860 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046378375.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:10:28 Heat of formation + Delta-G solvation = 88.892566 kcal Electronic energy + Delta-G solvation = -28952.979427 eV Core-core repulsion = 25037.640415 eV Total energy + Delta-G solvation = -3915.339011 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.49683 -41.47778 -39.90714 -38.61707 -35.69977 -34.71778 -33.67744 -32.43977 -31.69863 -31.11823 -30.45604 -29.85180 -27.50687 -25.73333 -25.15468 -24.19173 -22.87051 -22.06814 -21.63091 -21.35242 -20.41577 -19.56297 -19.03585 -18.43219 -17.18090 -16.70232 -16.33590 -16.31245 -16.27237 -16.01930 -15.69171 -15.55992 -15.21144 -14.86109 -14.71196 -14.44426 -14.25451 -13.90796 -13.76016 -13.65161 -13.54190 -13.50689 -13.35551 -13.05673 -12.81864 -12.74773 -12.33275 -12.12732 -12.05135 -11.97163 -11.72896 -11.69619 -11.57783 -11.39608 -10.72650 -10.68059 -10.23456 -10.18554 -10.01810 -9.13964 -8.85534 -7.85673 -5.19060 -0.58674 0.19106 0.92398 1.32503 1.43618 1.45653 1.52149 1.83087 1.89795 2.17825 2.48081 2.77007 3.32262 3.37823 3.53222 3.67424 3.68725 3.77917 3.86287 3.94803 4.05133 4.12505 4.20260 4.24581 4.40858 4.58318 4.65507 4.70480 4.72241 4.78655 4.83678 4.87762 4.93531 4.97845 5.03114 5.06614 5.09172 5.10760 5.21820 5.40114 5.43006 5.46912 5.64538 5.68155 5.70734 5.78619 6.10184 6.20505 6.58785 6.61280 7.12352 7.25653 7.77612 8.41799 9.23764 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011442 B = 0.002903 C = 0.002532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2446.581264 B = 9643.221817 C =11055.047980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.167 3.833 3 N -0.692 5.692 4 C 0.558 3.442 5 O -0.570 6.570 6 C -0.157 4.157 7 C -0.049 4.049 8 C -0.141 4.141 9 C 0.178 3.822 10 N -0.344 5.344 11 C 0.045 3.955 12 C -0.259 4.259 13 C 0.056 3.944 14 N -0.335 5.335 15 C -0.139 4.139 16 C -0.041 4.041 17 C -0.129 4.129 18 C 0.184 3.816 19 N -0.620 5.620 20 C -0.243 4.243 21 H 0.066 0.934 22 C -0.056 4.056 23 N -0.943 5.943 24 Si 0.971 3.029 25 H -0.288 1.288 26 H -0.282 1.282 27 H -0.282 1.282 28 C 0.129 3.871 29 H 0.073 0.927 30 H 0.062 0.938 31 H 0.076 0.924 32 H 0.408 0.592 33 H 0.157 0.843 34 H 0.171 0.829 35 H 0.211 0.789 36 H 0.185 0.815 37 H 0.219 0.781 38 H 0.140 0.860 39 H 0.138 0.862 40 H 0.100 0.900 41 H 0.091 0.909 42 H 0.021 0.979 43 H 0.009 0.991 44 H 0.248 0.752 45 H 0.026 0.974 46 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.352 21.625 -6.237 23.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.080 3.920 3 N -0.342 5.342 4 C 0.347 3.653 5 O -0.451 6.451 6 C -0.161 4.161 7 C -0.068 4.068 8 C -0.162 4.162 9 C 0.084 3.916 10 N -0.120 5.120 11 C -0.095 4.095 12 C -0.287 4.287 13 C -0.132 4.132 14 N -0.153 5.153 15 C -0.159 4.159 16 C -0.060 4.060 17 C -0.167 4.167 18 C 0.060 3.940 19 N -0.347 5.347 20 C -0.372 4.372 21 H 0.084 0.916 22 C -0.250 4.250 23 N -0.592 5.592 24 Si 0.800 3.200 25 H -0.213 1.213 26 H -0.209 1.209 27 H -0.208 1.208 28 C 0.003 3.997 29 H 0.092 0.908 30 H 0.081 0.919 31 H 0.095 0.905 32 H 0.245 0.755 33 H 0.175 0.825 34 H 0.188 0.812 35 H 0.228 0.772 36 H 0.202 0.798 37 H 0.235 0.765 38 H 0.158 0.842 39 H 0.156 0.844 40 H 0.118 0.882 41 H 0.110 0.890 42 H 0.040 0.960 43 H 0.027 0.973 44 H 0.057 0.943 45 H 0.044 0.956 46 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -6.488 20.698 -4.840 22.225 hybrid contribution 1.802 -0.140 0.157 1.815 sum -4.685 20.559 -4.683 21.600 Atomic orbital electron populations 1.21970 0.91916 1.03172 1.03225 1.21396 0.94180 0.80658 0.95733 1.45674 1.48412 1.11174 1.28950 1.18406 0.80438 0.85418 0.81074 1.90690 1.37548 1.79079 1.37811 1.20029 1.02886 0.93730 0.99477 1.21370 0.92968 0.95685 0.96794 1.20994 1.03351 0.92480 0.99332 1.17926 0.95635 0.81406 0.96617 1.46136 1.35949 1.08460 1.21476 1.23540 0.93721 0.95801 0.96392 1.22088 1.08850 0.96820 1.00905 1.24775 0.94021 0.97789 0.96567 1.77425 1.25838 0.98034 1.14045 1.20808 0.99032 0.96525 0.99551 1.21128 0.96804 0.91490 0.96623 1.23119 0.96867 1.00052 0.96643 1.20969 0.92947 0.97566 0.82546 1.44677 1.08289 1.78993 1.02709 1.19257 0.90738 1.37949 0.89244 0.91588 1.25471 0.99797 1.02223 0.97480 1.70123 1.24338 1.54444 1.10298 0.85269 0.78927 0.78004 0.77818 1.21345 1.20872 1.20795 1.22037 0.86416 0.95066 0.96229 0.90821 0.91922 0.90487 0.75524 0.82517 0.81198 0.77194 0.79805 0.76476 0.84216 0.84441 0.88158 0.89003 0.96030 0.97308 0.94250 0.95631 0.95714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.14 8.59 71.98 0.62 -3.52 16 2 C 0.17 5.66 0.82 5.07 0.00 5.66 16 3 N -0.69 -21.58 5.14 -419.31 -2.15 -23.73 16 4 C 0.56 18.61 7.15 86.73 0.62 19.23 16 5 O -0.57 -22.54 13.17 -3.95 -0.05 -22.59 16 6 C -0.16 -4.35 5.88 -20.08 -0.12 -4.47 16 7 C -0.05 -1.04 9.53 22.51 0.21 -0.83 16 8 C -0.14 -2.58 9.44 22.34 0.21 -2.37 16 9 C 0.18 3.99 6.69 38.26 0.26 4.25 16 10 N -0.34 -7.30 3.81 -187.28 -0.71 -8.01 16 11 C 0.05 0.65 10.81 83.39 0.90 1.56 16 12 C -0.26 -3.21 10.80 22.01 0.24 -2.97 16 13 C 0.06 0.86 12.02 85.26 1.02 1.88 16 14 N -0.34 -7.62 11.85 -56.98 -0.67 -8.30 16 15 C -0.14 -3.45 9.64 22.34 0.22 -3.23 16 16 C -0.04 -1.10 9.58 22.50 0.22 -0.89 16 17 C -0.13 -4.18 5.97 31.78 0.19 -3.99 16 18 C 0.18 8.58 5.36 86.73 0.47 9.04 16 19 N -0.62 -32.14 3.39 -691.55 -2.35 -34.49 16 20 C -0.24 -14.02 10.28 84.03 0.86 -13.15 16 21 H 0.07 3.81 7.83 -2.91 -0.02 3.79 16 22 C -0.06 -3.20 5.49 84.86 0.47 -2.74 16 23 N -0.94 -55.21 10.31 21.65 0.22 -54.99 16 24 Si 0.97 46.37 29.55 68.60 2.03 48.39 16 25 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 26 H -0.28 -13.22 7.11 99.48 0.71 -12.52 16 27 H -0.28 -13.18 7.11 99.48 0.71 -12.48 16 28 C 0.13 5.71 6.18 86.93 0.54 6.25 16 29 H 0.07 1.95 8.07 -2.39 -0.02 1.93 16 30 H 0.06 2.05 5.92 -2.39 -0.01 2.04 16 31 H 0.08 1.81 8.14 -2.38 -0.02 1.79 16 32 H 0.41 10.78 6.53 -92.71 -0.61 10.18 16 33 H 0.16 2.66 6.39 -2.91 -0.02 2.65 16 34 H 0.17 1.82 6.73 -2.91 -0.02 1.80 16 35 H 0.21 1.40 7.04 -2.91 -0.02 1.38 16 36 H 0.18 1.07 8.06 -2.91 -0.02 1.05 16 37 H 0.22 1.69 8.06 -2.91 -0.02 1.67 16 38 H 0.14 3.42 7.68 -2.91 -0.02 3.39 16 39 H 0.14 3.79 7.64 -2.91 -0.02 3.77 16 40 H 0.10 2.59 8.09 -2.39 -0.02 2.57 16 41 H 0.09 2.72 8.04 -2.39 -0.02 2.70 16 42 H 0.02 1.09 7.38 -2.39 -0.02 1.07 16 43 H 0.01 0.46 7.51 -2.39 -0.02 0.44 16 44 H 0.25 14.14 8.31 -92.71 -0.77 13.37 16 45 H 0.03 1.14 7.99 -2.39 -0.02 1.12 16 46 H 0.02 1.21 6.88 -2.38 -0.02 1.19 16 Total: -1.00 -77.55 375.05 3.64 -73.91 By element: Atomic # 1 Polarization: 19.68 SS G_CDS: 0.41 Total: 20.09 kcal Atomic # 6 Polarization: 2.80 SS G_CDS: 6.92 Total: 9.72 kcal Atomic # 7 Polarization: -123.85 SS G_CDS: -5.67 Total: -129.51 kcal Atomic # 8 Polarization: -22.54 SS G_CDS: -0.05 Total: -22.59 kcal Atomic # 14 Polarization: 46.37 SS G_CDS: 2.03 Total: 48.39 kcal Total: -77.55 3.64 -73.91 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046378375.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.798 kcal (2) G-P(sol) polarization free energy of solvation -77.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.905 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds