Wall clock time and date at job start Tue Mar 31 2020 23:11:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46507 * 110.77772 * 2 1 4 4 C 1.34781 * 119.99481 * 61.78675 * 3 2 1 5 5 O 1.21570 * 120.00515 * 359.97438 * 4 3 2 6 6 C 1.47668 * 119.99610 * 180.02562 * 4 3 2 7 7 C 1.41534 * 126.44435 * 179.71380 * 6 4 3 8 8 C 1.35353 * 105.55999 * 179.87674 * 7 6 4 9 9 N 1.35861 * 107.12143 * 0.37848 * 8 7 6 10 10 C 1.40117 * 124.95832 * 179.71678 * 9 8 7 11 11 C 1.38857 * 120.06691 * 359.73740 * 10 9 8 12 12 C 1.38117 * 119.92929 * 179.72067 * 11 10 9 13 13 C 1.38286 * 120.06681 * 0.55704 * 12 11 10 14 14 C 1.38288 * 120.14010 * 359.72137 * 13 12 11 15 15 C 1.38112 * 120.06303 * 359.97438 * 14 13 12 16 16 N 1.28477 * 110.08271 * 359.74981 * 9 8 7 17 17 C 1.55156 * 110.72288 * 236.76622 * 2 1 3 18 18 C 1.55130 * 101.48388 * 205.96862 * 17 2 1 19 19 N 1.47422 * 104.72242 * 37.29240 * 18 17 2 20 20 C 1.36935 * 125.64518 * 155.81677 * 19 18 17 21 21 H 1.08005 * 119.99877 * 179.68486 * 20 19 18 22 22 C 1.38811 * 120.00369 * 359.42000 * 20 19 18 23 23 N 1.31617 * 119.99773 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00451 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47154 * 89.99247 * 24 22 20 26 26 H 1.48496 * 109.47375 * 209.99772 * 24 22 20 27 27 H 1.48502 * 109.46736 * 329.99467 * 24 22 20 28 28 C 1.47016 * 108.70314 * 335.55143 * 19 18 17 29 29 H 1.09001 * 109.47013 * 298.21083 * 1 2 3 30 30 H 1.08994 * 109.46915 * 58.21520 * 1 2 3 31 31 H 1.08996 * 109.46861 * 178.21363 * 1 2 3 32 32 H 0.96994 * 120.00375 * 241.78496 * 3 2 1 33 33 H 1.07995 * 127.21763 * 0.02562 * 7 6 4 34 34 H 1.08004 * 126.43966 * 180.09150 * 8 7 6 35 35 H 1.07999 * 120.03376 * 359.97438 * 11 10 9 36 36 H 1.07995 * 119.96773 * 180.25406 * 12 11 10 37 37 H 1.08005 * 119.93000 * 179.73898 * 13 12 11 38 38 H 1.07996 * 119.96670 * 179.97438 * 14 13 12 39 39 H 1.08007 * 120.03313 * 180.02562 * 15 14 13 40 40 H 1.09006 * 110.99969 * 324.20530 * 17 2 1 41 41 H 1.08998 * 111.00492 * 88.01513 * 17 2 1 42 42 H 1.09000 * 110.49697 * 278.45056 * 18 17 2 43 43 H 1.09001 * 110.34287 * 156.05818 * 18 17 2 44 44 H 0.97004 * 120.00382 * 180.02562 * 23 22 20 45 45 H 1.09003 * 109.88086 * 120.70618 * 28 19 18 46 46 H 1.09003 * 109.88164 * 241.71479 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0498 1.3698 0.0000 4 6 1.7728 2.1955 1.0286 5 8 1.0915 1.8039 1.9561 6 6 2.2962 3.5764 1.0284 7 6 2.0865 4.5552 2.0289 8 6 2.7521 5.6552 1.6060 9 7 3.3193 5.3447 0.4111 10 6 4.0931 6.2204 -0.3620 11 6 4.3245 7.5170 0.0775 12 6 5.0925 8.3761 -0.6841 13 6 5.6211 7.9495 -1.8886 14 6 5.3876 6.6606 -2.3319 15 6 4.6257 5.7950 -1.5718 16 7 3.0421 4.1311 0.0933 17 6 2.0791 -0.7953 -1.2138 18 6 3.4667 -1.2454 -0.6861 19 7 3.2446 -1.5506 0.7390 20 6 4.0044 -2.3968 1.5017 21 1 3.7614 -2.5504 2.5428 22 6 5.0835 -3.0615 0.9355 23 7 5.3760 -2.8788 -0.3347 24 14 6.1195 -4.2164 1.9758 25 1 5.5551 -5.5881 1.9039 26 1 7.5136 -4.2273 1.4643 27 1 6.1134 -3.7519 3.3863 28 6 2.0761 -0.7911 1.2072 29 1 -0.3633 0.4858 0.9056 30 1 -0.3633 0.5413 -0.8735 31 1 -0.3633 -1.0271 -0.0320 32 1 2.5931 1.6824 -0.7402 33 1 1.5170 4.4463 2.9400 34 1 2.8161 6.6032 2.1194 35 1 3.9079 7.8522 1.0158 36 1 5.2763 9.3834 -0.3409 37 1 6.2178 8.6244 -2.4844 38 1 5.8014 6.3305 -3.2732 39 1 4.4440 4.7882 -1.9182 40 1 1.4453 -1.6535 -1.4375 41 1 2.1844 -0.1518 -2.0872 42 1 4.1948 -0.4413 -0.7928 43 1 3.8033 -2.1360 -1.2168 44 1 6.1299 -3.3435 -0.7305 45 1 1.3130 -1.4758 1.5775 46 1 2.3736 -0.1043 1.9996 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046441528.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:11:18 Heat of formation + Delta-G solvation = 113.349679 kcal Electronic energy + Delta-G solvation = -29006.510285 eV Core-core repulsion = 25092.231814 eV Total energy + Delta-G solvation = -3914.278471 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.01321 -39.77989 -39.28985 -37.14738 -33.97087 -33.85547 -32.00279 -31.71122 -30.63976 -30.09506 -29.25256 -28.57275 -25.63417 -24.83942 -23.68709 -23.46012 -22.15548 -21.07453 -20.40211 -20.01845 -18.86401 -18.75779 -17.30066 -16.64699 -16.57339 -16.28743 -15.50264 -15.30385 -14.89554 -14.62050 -14.45390 -14.09246 -13.95484 -13.75813 -13.64330 -13.39514 -13.14375 -12.86023 -12.67805 -12.17211 -12.09074 -11.96650 -11.68435 -11.62418 -11.48458 -10.99480 -10.88860 -10.81325 -10.38713 -10.36839 -10.27138 -10.03771 -9.93753 -9.62834 -9.48961 -9.41229 -9.34917 -8.62394 -8.58609 -8.45036 -6.73933 -5.58353 -2.98799 0.42065 0.86934 1.79533 2.09208 2.15491 3.33568 3.44391 3.45716 3.49694 3.52131 3.66626 4.08996 4.34184 4.50911 4.55348 4.56669 4.70400 4.89075 4.97539 5.07567 5.20353 5.32676 5.45441 5.47532 5.52334 5.56824 5.62758 5.64092 5.81001 5.82216 5.88248 6.02559 6.09568 6.22691 6.26704 6.29994 6.30276 6.42274 6.52209 6.58074 6.74635 6.77159 6.91105 7.21054 7.53618 7.65359 7.70331 7.88316 7.99148 8.42233 8.55792 9.29832 9.90653 10.55904 11.45592 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011736 B = 0.002854 C = 0.002580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2385.263124 B = 9809.238950 C =10852.022704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.159 3.841 3 N -0.692 5.692 4 C 0.603 3.397 5 O -0.528 6.528 6 C 0.006 3.994 7 C -0.168 4.168 8 C -0.021 4.021 9 N -0.238 5.238 10 C 0.140 3.860 11 C -0.130 4.130 12 C -0.098 4.098 13 C -0.123 4.123 14 C -0.097 4.097 15 C -0.109 4.109 16 N -0.258 5.258 17 C -0.146 4.146 18 C 0.152 3.848 19 N -0.604 5.604 20 C -0.215 4.215 21 H 0.077 0.923 22 C -0.014 4.014 23 N -0.925 5.925 24 Si 0.914 3.086 25 H -0.289 1.289 26 H -0.291 1.291 27 H -0.282 1.282 28 C 0.136 3.864 29 H 0.071 0.929 30 H 0.050 0.950 31 H 0.065 0.935 32 H 0.403 0.597 33 H 0.169 0.831 34 H 0.184 0.816 35 H 0.133 0.867 36 H 0.134 0.866 37 H 0.130 0.870 38 H 0.135 0.865 39 H 0.143 0.857 40 H 0.077 0.923 41 H 0.062 0.938 42 H 0.010 0.990 43 H 0.109 0.891 44 H 0.250 0.750 45 H 0.031 0.969 46 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.954 24.265 -4.299 24.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.073 3.927 3 N -0.342 5.342 4 C 0.387 3.613 5 O -0.402 6.402 6 C -0.157 4.157 7 C -0.195 4.195 8 C -0.160 4.160 9 N -0.020 5.020 10 C 0.049 3.951 11 C -0.151 4.151 12 C -0.116 4.116 13 C -0.142 4.142 14 C -0.115 4.115 15 C -0.129 4.129 16 N -0.091 5.091 17 C -0.185 4.185 18 C 0.027 3.973 19 N -0.330 5.330 20 C -0.343 4.343 21 H 0.094 0.906 22 C -0.209 4.209 23 N -0.574 5.574 24 Si 0.745 3.255 25 H -0.216 1.216 26 H -0.218 1.218 27 H -0.208 1.208 28 C 0.009 3.991 29 H 0.090 0.910 30 H 0.069 0.931 31 H 0.084 0.916 32 H 0.238 0.762 33 H 0.186 0.814 34 H 0.201 0.799 35 H 0.151 0.849 36 H 0.152 0.848 37 H 0.148 0.852 38 H 0.153 0.847 39 H 0.161 0.839 40 H 0.096 0.904 41 H 0.081 0.919 42 H 0.028 0.972 43 H 0.127 0.873 44 H 0.061 0.939 45 H 0.049 0.951 46 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -3.737 23.619 -4.682 24.367 hybrid contribution 0.599 -0.100 1.028 1.194 sum -3.139 23.519 -3.655 24.007 Atomic orbital electron populations 1.22037 0.94171 1.02206 1.02346 1.21394 0.93001 0.80084 0.98240 1.45846 1.53085 1.12563 1.22747 1.16752 0.79917 0.82032 0.82610 1.90765 1.38942 1.75307 1.35234 1.22297 1.02175 0.96794 0.94390 1.21855 1.04422 0.91368 1.01833 1.22986 1.01643 1.02125 0.89277 1.42736 1.36098 1.08037 1.15147 1.17706 0.95862 0.88982 0.92542 1.20855 1.01350 0.91419 1.01440 1.20995 0.96606 0.99565 0.94467 1.21317 1.00017 0.96327 0.96518 1.21148 0.97221 0.93324 0.99847 1.21070 0.97522 1.01584 0.92696 1.73553 1.16410 0.93470 1.25651 1.23395 1.01281 0.98790 0.95046 1.22002 0.89350 1.00614 0.85323 1.44508 1.30706 1.50203 1.07591 1.19102 1.06196 1.16125 0.92907 0.90550 1.24756 0.98894 1.00812 0.96452 1.69768 1.30421 1.46452 1.10791 0.86068 0.79525 0.80763 0.79175 1.21638 1.21753 1.20803 1.21614 0.90342 0.93162 0.93949 0.91024 0.93097 0.91615 0.76211 0.81379 0.79867 0.84913 0.84834 0.85239 0.84704 0.83897 0.90405 0.91913 0.97186 0.87306 0.93881 0.95066 0.94715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.45 8.41 37.16 0.31 -2.14 16 2 C 0.16 3.00 0.80 -129.98 -0.10 2.90 16 3 N -0.69 -12.37 5.14 -46.89 -0.24 -12.61 16 4 C 0.60 11.06 7.05 -12.41 -0.09 10.98 16 5 O -0.53 -10.78 13.88 5.30 0.07 -10.71 16 6 C 0.01 0.09 7.13 -82.75 -0.59 -0.50 16 7 C -0.17 -2.21 10.80 -39.36 -0.42 -2.63 16 8 C -0.02 -0.23 10.78 -16.80 -0.18 -0.41 16 9 N -0.24 -3.00 3.52 -10.55 -0.04 -3.03 16 10 C 0.14 1.48 6.66 -83.61 -0.56 0.92 16 11 C -0.13 -1.00 9.43 -39.40 -0.37 -1.37 16 12 C -0.10 -0.60 10.04 -39.61 -0.40 -1.00 16 13 C -0.12 -0.77 10.04 -39.55 -0.40 -1.17 16 14 C -0.10 -0.74 10.04 -39.61 -0.40 -1.13 16 15 C -0.11 -1.10 9.59 -39.40 -0.38 -1.48 16 16 N -0.26 -3.88 10.85 33.42 0.36 -3.52 16 17 C -0.15 -2.78 6.10 -24.46 -0.15 -2.93 16 18 C 0.15 3.74 5.90 -2.41 -0.01 3.73 16 19 N -0.60 -16.20 3.39 -169.94 -0.58 -16.78 16 20 C -0.21 -6.26 10.27 -15.06 -0.15 -6.41 16 21 H 0.08 2.18 7.83 -52.48 -0.41 1.77 16 22 C -0.01 -0.42 5.49 -17.43 -0.10 -0.51 16 23 N -0.92 -27.41 10.08 55.49 0.56 -26.85 16 24 Si 0.91 22.79 29.55 -169.99 -5.02 17.77 16 25 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 26 H -0.29 -7.29 7.11 56.52 0.40 -6.88 16 27 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 28 C 0.14 3.16 6.13 -3.07 -0.02 3.15 16 29 H 0.07 1.25 6.46 -51.93 -0.34 0.92 16 30 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.06 1.02 8.13 -51.93 -0.42 0.60 16 32 H 0.40 6.70 8.19 -40.82 -0.33 6.36 16 33 H 0.17 1.95 8.06 -52.49 -0.42 1.53 16 34 H 0.18 1.16 6.96 -52.48 -0.37 0.79 16 35 H 0.13 0.72 6.65 -52.49 -0.35 0.37 16 36 H 0.13 0.47 8.06 -52.49 -0.42 0.05 16 37 H 0.13 0.50 8.06 -52.48 -0.42 0.08 16 38 H 0.14 0.76 8.06 -52.49 -0.42 0.33 16 39 H 0.14 1.55 7.65 -52.48 -0.40 1.15 16 40 H 0.08 1.43 8.04 -51.93 -0.42 1.02 16 41 H 0.06 1.02 8.04 -51.93 -0.42 0.61 16 42 H 0.01 0.27 8.14 -51.93 -0.42 -0.16 16 43 H 0.11 2.99 5.84 -51.93 -0.30 2.69 16 44 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 45 H 0.03 0.73 7.82 -51.93 -0.41 0.32 16 46 H 0.03 0.88 6.48 -51.93 -0.34 0.54 16 LS Contribution 377.29 15.07 5.69 5.69 Total: -1.00 -34.70 377.29 -9.37 -44.07 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: -6.17 Total: 5.99 kcal Atomic # 6 Polarization: 3.99 SS G_CDS: -4.01 Total: -0.02 kcal Atomic # 7 Polarization: -62.85 SS G_CDS: 0.07 Total: -62.79 kcal Atomic # 8 Polarization: -10.78 SS G_CDS: 0.07 Total: -10.71 kcal Atomic # 14 Polarization: 22.79 SS G_CDS: -5.02 Total: 17.77 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -34.70 -9.37 -44.07 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046441528.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.419 kcal (2) G-P(sol) polarization free energy of solvation -34.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.070 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds