Wall clock time and date at job start Tue Mar 31 2020 23:11:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46507 * 110.77772 * 2 1 4 4 C 1.34781 * 119.99481 * 61.78675 * 3 2 1 5 5 O 1.21570 * 120.00515 * 359.97438 * 4 3 2 6 6 C 1.47668 * 119.99610 * 180.02562 * 4 3 2 7 7 C 1.41534 * 126.44435 * 179.71380 * 6 4 3 8 8 C 1.35353 * 105.55999 * 179.87674 * 7 6 4 9 9 N 1.35861 * 107.12143 * 0.37848 * 8 7 6 10 10 C 1.40117 * 124.95832 * 179.71678 * 9 8 7 11 11 C 1.38857 * 120.06691 * 359.73740 * 10 9 8 12 12 C 1.38117 * 119.92929 * 179.72067 * 11 10 9 13 13 C 1.38286 * 120.06681 * 0.55704 * 12 11 10 14 14 C 1.38288 * 120.14010 * 359.72137 * 13 12 11 15 15 C 1.38112 * 120.06303 * 359.97438 * 14 13 12 16 16 N 1.28477 * 110.08271 * 359.74981 * 9 8 7 17 17 C 1.55156 * 110.72288 * 236.76622 * 2 1 3 18 18 C 1.55130 * 101.48388 * 205.96862 * 17 2 1 19 19 N 1.47422 * 104.72242 * 37.29240 * 18 17 2 20 20 C 1.36935 * 125.64518 * 155.81677 * 19 18 17 21 21 H 1.08005 * 119.99877 * 179.68486 * 20 19 18 22 22 C 1.38811 * 120.00369 * 359.42000 * 20 19 18 23 23 N 1.31617 * 119.99773 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00451 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47154 * 89.99247 * 24 22 20 26 26 H 1.48496 * 109.47375 * 209.99772 * 24 22 20 27 27 H 1.48502 * 109.46736 * 329.99467 * 24 22 20 28 28 C 1.47016 * 108.70314 * 335.55143 * 19 18 17 29 29 H 1.09001 * 109.47013 * 298.21083 * 1 2 3 30 30 H 1.08994 * 109.46915 * 58.21520 * 1 2 3 31 31 H 1.08996 * 109.46861 * 178.21363 * 1 2 3 32 32 H 0.96994 * 120.00375 * 241.78496 * 3 2 1 33 33 H 1.07995 * 127.21763 * 0.02562 * 7 6 4 34 34 H 1.08004 * 126.43966 * 180.09150 * 8 7 6 35 35 H 1.07999 * 120.03376 * 359.97438 * 11 10 9 36 36 H 1.07995 * 119.96773 * 180.25406 * 12 11 10 37 37 H 1.08005 * 119.93000 * 179.73898 * 13 12 11 38 38 H 1.07996 * 119.96670 * 179.97438 * 14 13 12 39 39 H 1.08007 * 120.03313 * 180.02562 * 15 14 13 40 40 H 1.09006 * 110.99969 * 324.20530 * 17 2 1 41 41 H 1.08998 * 111.00492 * 88.01513 * 17 2 1 42 42 H 1.09000 * 110.49697 * 278.45056 * 18 17 2 43 43 H 1.09001 * 110.34287 * 156.05818 * 18 17 2 44 44 H 0.97004 * 120.00382 * 180.02562 * 23 22 20 45 45 H 1.09003 * 109.88086 * 120.70618 * 28 19 18 46 46 H 1.09003 * 109.88164 * 241.71479 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0498 1.3698 0.0000 4 6 1.7728 2.1955 1.0286 5 8 1.0915 1.8039 1.9561 6 6 2.2962 3.5764 1.0284 7 6 2.0865 4.5552 2.0289 8 6 2.7521 5.6552 1.6060 9 7 3.3193 5.3447 0.4111 10 6 4.0931 6.2204 -0.3620 11 6 4.3245 7.5170 0.0775 12 6 5.0925 8.3761 -0.6841 13 6 5.6211 7.9495 -1.8886 14 6 5.3876 6.6606 -2.3319 15 6 4.6257 5.7950 -1.5718 16 7 3.0421 4.1311 0.0933 17 6 2.0791 -0.7953 -1.2138 18 6 3.4667 -1.2454 -0.6861 19 7 3.2446 -1.5506 0.7390 20 6 4.0044 -2.3968 1.5017 21 1 3.7614 -2.5504 2.5428 22 6 5.0835 -3.0615 0.9355 23 7 5.3760 -2.8788 -0.3347 24 14 6.1195 -4.2164 1.9758 25 1 5.5551 -5.5881 1.9039 26 1 7.5136 -4.2273 1.4643 27 1 6.1134 -3.7519 3.3863 28 6 2.0761 -0.7911 1.2072 29 1 -0.3633 0.4858 0.9056 30 1 -0.3633 0.5413 -0.8735 31 1 -0.3633 -1.0271 -0.0320 32 1 2.5931 1.6824 -0.7402 33 1 1.5170 4.4463 2.9400 34 1 2.8161 6.6032 2.1194 35 1 3.9079 7.8522 1.0158 36 1 5.2763 9.3834 -0.3409 37 1 6.2178 8.6244 -2.4844 38 1 5.8014 6.3305 -3.2732 39 1 4.4440 4.7882 -1.9182 40 1 1.4453 -1.6535 -1.4375 41 1 2.1844 -0.1518 -2.0872 42 1 4.1948 -0.4413 -0.7928 43 1 3.8033 -2.1360 -1.2168 44 1 6.1299 -3.3435 -0.7305 45 1 1.3130 -1.4758 1.5775 46 1 2.3736 -0.1043 1.9996 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046441528.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:11:17 Heat of formation + Delta-G solvation = 91.323598 kcal Electronic energy + Delta-G solvation = -29007.465408 eV Core-core repulsion = 25092.231814 eV Total energy + Delta-G solvation = -3915.233594 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.97723 -41.20992 -40.00405 -38.81471 -35.77911 -34.74976 -33.65682 -32.56127 -31.84086 -31.36810 -30.47796 -30.06590 -27.56758 -26.02803 -25.21420 -24.33040 -23.09337 -22.27556 -21.89325 -21.33068 -20.36786 -19.62470 -18.98917 -18.20300 -17.28602 -17.26665 -17.08441 -16.70928 -15.96868 -15.92116 -15.74807 -15.53752 -15.24524 -14.96776 -14.61739 -14.50507 -14.30458 -14.06896 -13.96508 -13.81824 -13.58911 -13.33114 -13.14849 -12.84004 -12.79255 -12.62135 -12.29118 -12.12478 -12.06934 -12.00208 -11.90881 -11.71728 -11.62166 -11.22844 -10.94499 -10.76901 -10.37546 -10.09537 -10.04751 -9.29684 -8.90472 -7.79482 -5.23930 -0.31639 0.30743 0.68593 1.24924 1.30263 1.43381 1.45887 1.54588 2.11106 2.33285 2.47329 2.75857 3.16472 3.29436 3.56365 3.68405 3.71053 3.80535 3.92326 3.99019 4.07373 4.15032 4.20676 4.39396 4.43083 4.56803 4.60794 4.63313 4.64390 4.66368 4.78506 4.83333 4.89319 4.99996 5.00389 5.06217 5.14705 5.26522 5.32198 5.36584 5.41144 5.48889 5.57297 5.62795 5.70175 5.77421 6.01354 6.28979 6.43466 6.77474 7.08744 7.15694 7.75087 8.39396 9.21760 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011736 B = 0.002854 C = 0.002580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2385.263124 B = 9809.238950 C =10852.022704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.168 3.832 3 N -0.692 5.692 4 C 0.601 3.399 5 O -0.557 6.557 6 C -0.030 4.030 7 C -0.186 4.186 8 C -0.001 4.001 9 N -0.234 5.234 10 C 0.101 3.899 11 C -0.125 4.125 12 C -0.094 4.094 13 C -0.115 4.115 14 C -0.105 4.105 15 C -0.133 4.133 16 N -0.278 5.278 17 C -0.127 4.127 18 C 0.156 3.844 19 N -0.623 5.623 20 C -0.242 4.242 21 H 0.071 0.929 22 C -0.064 4.064 23 N -0.945 5.945 24 Si 0.981 3.019 25 H -0.280 1.280 26 H -0.290 1.290 27 H -0.277 1.277 28 C 0.135 3.865 29 H 0.058 0.942 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.408 0.592 33 H 0.177 0.823 34 H 0.233 0.767 35 H 0.159 0.841 36 H 0.169 0.831 37 H 0.160 0.840 38 H 0.149 0.851 39 H 0.121 0.879 40 H 0.091 0.909 41 H 0.096 0.904 42 H -0.015 1.015 43 H 0.081 0.919 44 H 0.248 0.752 45 H 0.029 0.971 46 H 0.008 0.992 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.677 27.284 -4.657 27.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.081 3.919 3 N -0.342 5.342 4 C 0.386 3.614 5 O -0.434 6.434 6 C -0.190 4.190 7 C -0.214 4.214 8 C -0.140 4.140 9 N -0.016 5.016 10 C 0.012 3.988 11 C -0.145 4.145 12 C -0.112 4.112 13 C -0.133 4.133 14 C -0.123 4.123 15 C -0.153 4.153 16 N -0.113 5.113 17 C -0.166 4.166 18 C 0.031 3.969 19 N -0.349 5.349 20 C -0.371 4.371 21 H 0.089 0.911 22 C -0.256 4.256 23 N -0.595 5.595 24 Si 0.809 3.191 25 H -0.207 1.207 26 H -0.216 1.216 27 H -0.202 1.202 28 C 0.009 3.991 29 H 0.077 0.923 30 H 0.095 0.905 31 H 0.095 0.905 32 H 0.244 0.756 33 H 0.195 0.805 34 H 0.249 0.751 35 H 0.177 0.823 36 H 0.186 0.814 37 H 0.177 0.823 38 H 0.167 0.833 39 H 0.139 0.861 40 H 0.109 0.891 41 H 0.114 0.886 42 H 0.003 0.997 43 H 0.098 0.902 44 H 0.058 0.942 45 H 0.047 0.953 46 H 0.026 0.974 Dipole moment (debyes) X Y Z Total from point charges -3.470 26.652 -5.063 27.350 hybrid contribution 0.644 -0.865 1.092 1.534 sum -2.827 25.787 -3.971 26.244 Atomic orbital electron populations 1.21959 0.91652 1.03208 1.02942 1.21279 0.94644 0.80126 0.95812 1.45817 1.53230 1.12074 1.23085 1.17099 0.79333 0.82990 0.81981 1.90728 1.40313 1.76239 1.36098 1.22090 1.04259 0.96314 0.96355 1.22090 1.05682 0.91596 1.01990 1.23662 0.99236 1.03005 0.88145 1.43031 1.35461 1.07407 1.15730 1.18123 0.97473 0.90081 0.93155 1.21237 1.00808 0.89995 1.02443 1.21472 0.95152 1.00737 0.93875 1.21750 0.99045 0.95811 0.96727 1.21390 0.96835 0.93859 1.00240 1.21113 0.99102 1.01386 0.93650 1.73474 1.16814 0.94987 1.25983 1.23253 0.97649 0.99758 0.95942 1.21800 0.92142 0.98507 0.84449 1.44794 1.31351 1.50239 1.08511 1.19398 1.07300 1.17170 0.93260 0.91086 1.25599 0.99933 1.02300 0.97781 1.70011 1.30513 1.46944 1.12005 0.85041 0.77564 0.78760 0.77728 1.20703 1.21590 1.20197 1.21692 0.89295 0.92766 0.95341 0.92252 0.90515 0.90511 0.75633 0.80540 0.75051 0.82323 0.81354 0.82272 0.83305 0.86099 0.89087 0.88605 0.99727 0.90160 0.94175 0.95261 0.97378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.46 8.41 71.98 0.61 -3.85 16 2 C 0.17 6.42 0.80 4.79 0.00 6.42 16 3 N -0.69 -25.50 5.14 -420.54 -2.16 -27.67 16 4 C 0.60 23.01 7.05 86.73 0.61 23.63 16 5 O -0.56 -23.80 13.88 -3.94 -0.05 -23.86 16 6 C -0.03 -1.01 7.13 42.45 0.30 -0.70 16 7 C -0.19 -4.91 10.80 22.42 0.24 -4.66 16 8 C 0.00 -0.02 10.78 83.40 0.90 0.88 16 9 N -0.23 -5.77 3.52 -187.29 -0.66 -6.43 16 10 C 0.10 2.03 6.66 38.11 0.25 2.29 16 11 C -0.12 -1.51 9.43 22.39 0.21 -1.29 16 12 C -0.09 -0.76 10.04 22.25 0.22 -0.54 16 13 C -0.12 -1.05 10.04 22.29 0.22 -0.83 16 14 C -0.10 -1.45 10.04 22.25 0.22 -1.23 16 15 C -0.13 -2.70 9.59 22.39 0.21 -2.49 16 16 N -0.28 -8.65 10.85 -48.16 -0.52 -9.18 16 17 C -0.13 -4.80 6.10 32.06 0.20 -4.61 16 18 C 0.16 7.94 5.90 86.93 0.51 8.45 16 19 N -0.62 -34.75 3.39 -691.57 -2.35 -37.10 16 20 C -0.24 -14.62 10.27 84.03 0.86 -13.76 16 21 H 0.07 4.22 7.83 -2.91 -0.02 4.20 16 22 C -0.06 -3.76 5.49 84.86 0.47 -3.30 16 23 N -0.95 -57.59 10.08 21.65 0.22 -57.37 16 24 Si 0.98 47.70 29.55 68.60 2.03 49.73 16 25 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 26 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 27 H -0.28 -13.08 7.11 99.48 0.71 -12.38 16 28 C 0.14 6.55 6.13 86.73 0.53 7.08 16 29 H 0.06 2.07 6.46 -2.39 -0.02 2.06 16 30 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 31 H 0.08 2.28 8.13 -2.39 -0.02 2.26 16 32 H 0.41 14.07 8.19 -92.71 -0.76 13.31 16 33 H 0.18 4.13 8.06 -2.91 -0.02 4.11 16 34 H 0.23 1.97 6.96 -2.91 -0.02 1.95 16 35 H 0.16 0.98 6.65 -2.91 -0.02 0.96 16 36 H 0.17 0.23 8.06 -2.91 -0.02 0.20 16 37 H 0.16 0.51 8.06 -2.91 -0.02 0.48 16 38 H 0.15 1.49 8.06 -2.91 -0.02 1.47 16 39 H 0.12 2.88 7.65 -2.91 -0.02 2.86 16 40 H 0.09 3.23 8.04 -2.38 -0.02 3.21 16 41 H 0.10 2.99 8.04 -2.39 -0.02 2.97 16 42 H -0.02 -0.84 8.14 -2.39 -0.02 -0.86 16 43 H 0.08 4.58 5.84 -2.39 -0.01 4.56 16 44 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 45 H 0.03 1.42 7.82 -2.39 -0.02 1.40 16 46 H 0.01 0.44 6.48 -2.39 -0.02 0.42 16 Total: -1.00 -80.37 377.29 3.34 -77.04 By element: Atomic # 1 Polarization: 23.09 SS G_CDS: 0.25 Total: 23.34 kcal Atomic # 6 Polarization: 4.90 SS G_CDS: 6.58 Total: 11.49 kcal Atomic # 7 Polarization: -132.27 SS G_CDS: -5.47 Total: -137.74 kcal Atomic # 8 Polarization: -23.80 SS G_CDS: -0.05 Total: -23.86 kcal Atomic # 14 Polarization: 47.70 SS G_CDS: 2.03 Total: 49.73 kcal Total: -80.37 3.34 -77.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046441528.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.360 kcal (2) G-P(sol) polarization free energy of solvation -80.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.036 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds