Wall clock time and date at job start Tue Mar 31 2020 23:11:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46504 * 110.64397 * 2 1 4 4 C 1.34777 * 119.99854 * 56.85441 * 3 2 1 5 5 O 1.21613 * 119.99966 * 0.02562 * 4 3 2 6 6 C 1.47411 * 120.00082 * 180.27826 * 4 3 2 7 7 C 1.41328 * 126.40897 * 359.41220 * 6 4 3 8 8 N 1.30476 * 108.06807 * 179.87762 * 7 6 4 9 9 N 1.39928 * 108.91369 * 0.38897 * 8 7 6 10 10 C 1.40164 * 125.77273 * 179.72976 * 9 8 7 11 11 C 1.38836 * 120.06675 * 179.75254 * 10 9 8 12 12 C 1.38124 * 119.93159 * 179.72433 * 11 10 9 13 13 C 1.38284 * 120.06402 * 0.54352 * 12 11 10 14 14 C 1.38284 * 120.13485 * 359.72802 * 13 12 11 15 15 C 1.38117 * 120.06941 * 0.02562 * 14 13 12 16 16 C 1.34543 * 108.45946 * 359.74989 * 9 8 7 17 17 C 1.55158 * 110.72039 * 236.86036 * 2 1 3 18 18 C 1.54915 * 101.57897 * 205.95664 * 17 2 1 19 19 N 1.47424 * 104.83173 * 37.01111 * 18 17 2 20 20 C 1.36941 * 125.64964 * 155.90882 * 19 18 17 21 21 H 1.07998 * 120.00087 * 179.97438 * 20 19 18 22 22 C 1.38811 * 119.99833 * 359.96917 * 20 19 18 23 23 N 1.31620 * 119.99853 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 120.00255 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.47159 * 59.99403 * 24 22 20 26 26 H 1.48490 * 109.47423 * 180.02562 * 24 22 20 27 27 H 1.48509 * 109.46901 * 300.00008 * 24 22 20 28 28 C 1.47021 * 108.70333 * 335.86819 * 19 18 17 29 29 H 1.09004 * 109.46964 * 60.69939 * 1 2 3 30 30 H 1.09001 * 109.47462 * 180.70102 * 1 2 3 31 31 H 1.09001 * 109.47063 * 300.69900 * 1 2 3 32 32 H 0.97000 * 120.00410 * 236.86167 * 3 2 1 33 33 H 1.08004 * 125.96808 * 0.04165 * 7 6 4 34 34 H 1.08001 * 120.04002 * 359.96950 * 11 10 9 35 35 H 1.07993 * 119.96901 * 180.29818 * 12 11 10 36 36 H 1.07998 * 119.93571 * 179.74718 * 13 12 11 37 37 H 1.08005 * 119.96614 * 179.97438 * 14 13 12 38 38 H 1.08001 * 120.03838 * 179.97438 * 15 14 13 39 39 H 1.07999 * 126.31115 * 179.97438 * 16 9 8 40 40 H 1.08995 * 111.00163 * 324.02998 * 17 2 1 41 41 H 1.08997 * 111.00836 * 87.84617 * 17 2 1 42 42 H 1.09002 * 110.36309 * 155.84395 * 18 17 2 43 43 H 1.08994 * 110.36718 * 278.16968 * 18 17 2 44 44 H 0.97001 * 119.99908 * 179.97438 * 23 22 20 45 45 H 1.09003 * 109.88522 * 241.64615 * 28 19 18 46 46 H 1.09001 * 109.88570 * 120.47949 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0465 1.3710 0.0000 4 6 1.6869 2.2266 0.9773 5 8 0.9340 1.8604 1.8594 6 6 2.2017 3.6078 0.9740 7 6 3.0836 4.1721 0.0246 8 7 3.3014 5.4134 0.3624 9 7 2.5874 5.6973 1.5318 10 6 2.5731 6.9266 2.2050 11 6 1.8151 7.0793 3.3581 12 6 1.8075 8.2903 4.0225 13 6 2.5450 9.3531 3.5339 14 6 3.2965 9.2057 2.3825 15 6 3.3121 7.9958 1.7166 16 6 1.9173 4.5906 1.9010 17 6 2.0789 -0.7934 -1.2152 18 6 3.4652 -1.2446 -0.6913 19 7 3.2494 -1.5470 0.7354 20 6 4.0124 -2.3918 1.4965 21 1 3.7713 -2.5469 2.5377 22 6 5.0958 -3.0490 0.9296 23 7 5.3899 -2.8597 -0.3392 24 14 6.1363 -4.2019 1.9676 25 1 5.2851 -5.2999 2.4922 26 1 7.2238 -4.7734 1.1335 27 1 6.7275 -3.4485 3.1026 28 6 2.0798 -0.7906 1.2059 29 1 -0.3633 0.5030 -0.8962 30 1 -0.3634 -1.0276 0.0126 31 1 -0.3633 0.5247 0.8837 32 1 2.6472 1.6630 -0.7034 33 1 3.5019 3.6651 -0.8324 34 1 1.2351 6.2511 3.7375 35 1 1.2219 8.4083 4.9222 36 1 2.5343 10.3002 4.0528 37 1 3.8712 10.0377 2.0031 38 1 3.8989 7.8813 0.8171 39 1 1.2756 4.4895 2.7638 40 1 1.4469 -1.6528 -1.4383 41 1 2.1814 -0.1491 -2.0884 42 1 3.7992 -2.1364 -1.2217 43 1 4.1929 -0.4409 -0.8029 44 1 6.1472 -3.3186 -0.7353 45 1 2.3774 -0.1015 1.9963 46 1 1.3190 -1.4772 1.5770 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046461061.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:11:37 Heat of formation + Delta-G solvation = 107.277062 kcal Electronic energy + Delta-G solvation = -28686.287587 eV Core-core repulsion = 24771.745787 eV Total energy + Delta-G solvation = -3914.541800 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.89308 -39.75257 -39.16663 -37.12454 -34.09271 -33.81732 -31.90840 -31.63429 -30.52089 -30.01186 -29.11350 -28.58811 -25.64526 -24.47716 -23.59843 -23.49203 -22.21617 -21.02117 -20.37031 -19.99953 -19.02370 -18.64517 -17.13087 -16.72017 -16.07439 -15.71976 -15.70508 -15.48783 -14.92380 -14.63919 -14.37957 -14.29403 -13.99254 -13.92232 -13.66522 -13.14626 -13.11468 -12.87992 -12.69605 -12.21249 -12.10439 -11.93476 -11.74452 -11.66824 -11.51661 -11.16388 -10.91414 -10.81829 -10.69238 -10.35828 -10.29376 -10.08900 -9.90640 -9.62367 -9.48580 -9.36828 -9.25460 -8.63682 -8.59459 -8.36680 -6.77301 -5.61560 -3.01673 0.39720 0.86786 1.70049 1.96177 2.07294 3.34038 3.43782 3.47575 3.48837 3.50360 3.65421 4.11509 4.35191 4.50768 4.51569 4.53717 4.68470 4.88398 4.91911 4.99757 5.15890 5.22613 5.27230 5.43666 5.50315 5.52517 5.59585 5.63169 5.78621 5.81908 5.88084 6.01915 6.10222 6.20544 6.23471 6.27601 6.28104 6.41724 6.50766 6.57418 6.76398 6.77280 6.87502 7.19562 7.26602 7.49028 7.66897 7.84704 7.94366 8.39275 8.60165 9.27021 9.87789 10.52810 11.42725 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.015483 B = 0.002403 C = 0.002268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1808.036504 B =11647.906298 C =12340.000060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.162 3.838 3 N -0.702 5.702 4 C 0.595 3.405 5 O -0.545 6.545 6 C -0.271 4.271 7 C 0.093 3.907 8 N -0.292 5.292 9 N -0.315 5.315 10 C 0.157 3.843 11 C -0.139 4.139 12 C -0.093 4.093 13 C -0.129 4.129 14 C -0.097 4.097 15 C -0.116 4.116 16 C 0.122 3.878 17 C -0.147 4.147 18 C 0.153 3.847 19 N -0.604 5.604 20 C -0.217 4.217 21 H 0.076 0.924 22 C -0.013 4.013 23 N -0.925 5.925 24 Si 0.914 3.086 25 H -0.285 1.285 26 H -0.290 1.290 27 H -0.287 1.287 28 C 0.137 3.863 29 H 0.049 0.951 30 H 0.062 0.938 31 H 0.076 0.924 32 H 0.396 0.604 33 H 0.197 0.803 34 H 0.133 0.867 35 H 0.134 0.866 36 H 0.129 0.871 37 H 0.132 0.868 38 H 0.139 0.861 39 H 0.191 0.809 40 H 0.076 0.924 41 H 0.063 0.937 42 H 0.108 0.892 43 H 0.010 0.990 44 H 0.251 0.749 45 H 0.031 0.969 46 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.203 23.338 1.595 24.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.076 3.924 3 N -0.351 5.351 4 C 0.382 3.618 5 O -0.424 6.424 6 C -0.285 4.285 7 C -0.095 4.095 8 N -0.109 5.109 9 N -0.088 5.088 10 C 0.065 3.935 11 C -0.160 4.160 12 C -0.111 4.111 13 C -0.148 4.148 14 C -0.116 4.116 15 C -0.136 4.136 16 C -0.024 4.024 17 C -0.186 4.186 18 C 0.028 3.972 19 N -0.330 5.330 20 C -0.345 4.345 21 H 0.094 0.906 22 C -0.208 4.208 23 N -0.574 5.574 24 Si 0.745 3.255 25 H -0.212 1.212 26 H -0.216 1.216 27 H -0.213 1.213 28 C 0.010 3.990 29 H 0.068 0.932 30 H 0.081 0.919 31 H 0.095 0.905 32 H 0.230 0.770 33 H 0.214 0.786 34 H 0.151 0.849 35 H 0.152 0.848 36 H 0.147 0.853 37 H 0.150 0.850 38 H 0.157 0.843 39 H 0.208 0.792 40 H 0.095 0.905 41 H 0.081 0.919 42 H 0.125 0.875 43 H 0.028 0.972 44 H 0.062 0.938 45 H 0.049 0.951 46 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -7.940 24.036 1.923 25.386 hybrid contribution 0.599 -1.195 0.390 1.392 sum -7.341 22.841 2.313 24.103 Atomic orbital electron populations 1.22069 0.94156 1.02233 1.02541 1.21333 0.93069 0.80108 0.97877 1.45748 1.49550 1.11956 1.27888 1.17047 0.80188 0.83032 0.81574 1.90726 1.36862 1.78033 1.36775 1.20476 1.10091 0.96789 1.01100 1.24289 0.95145 0.91152 0.98937 1.77219 1.17700 1.17274 0.98752 1.45650 1.35084 1.08248 1.19839 1.17614 0.99627 0.83184 0.93064 1.20927 1.00777 0.99596 0.94673 1.21004 0.98694 0.91904 0.99527 1.21274 0.97486 0.99279 0.96732 1.21103 0.98548 0.96793 0.95119 1.20954 0.99665 0.91611 1.01367 1.22982 0.95281 0.85032 0.99133 1.23364 1.01251 0.98872 0.95112 1.21939 0.89371 1.00620 0.85311 1.44494 1.30607 1.50479 1.07418 1.19047 1.05980 1.16578 0.92927 0.90632 1.24753 0.98798 1.00799 0.96461 1.69765 1.30166 1.46644 1.10855 0.86153 0.79775 0.80636 0.78964 1.21180 1.21620 1.21330 1.21607 0.90238 0.93147 0.93963 0.93215 0.91868 0.90475 0.76959 0.78595 0.84887 0.84820 0.85342 0.84973 0.84269 0.79218 0.90516 0.91864 0.87458 0.97166 0.93787 0.95093 0.95184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.41 8.38 37.16 0.31 -2.10 16 2 C 0.16 2.90 0.81 -129.98 -0.10 2.80 16 3 N -0.70 -11.19 5.13 -46.97 -0.24 -11.43 16 4 C 0.59 9.79 7.03 -12.53 -0.09 9.70 16 5 O -0.55 -10.41 13.89 5.27 0.07 -10.33 16 6 C -0.27 -3.77 6.13 -105.05 -0.64 -4.41 16 7 C 0.09 1.15 11.50 -16.95 -0.20 0.96 16 8 N -0.29 -3.83 11.77 30.87 0.36 -3.47 16 9 N -0.32 -3.89 3.77 -10.21 -0.04 -3.93 16 10 C 0.16 1.65 6.68 -83.60 -0.56 1.09 16 11 C -0.14 -1.17 9.45 -39.40 -0.37 -1.54 16 12 C -0.09 -0.61 10.04 -39.61 -0.40 -1.01 16 13 C -0.13 -0.80 10.04 -39.55 -0.40 -1.20 16 14 C -0.10 -0.68 10.04 -39.61 -0.40 -1.08 16 15 C -0.12 -1.09 9.65 -39.40 -0.38 -1.47 16 16 C 0.12 1.53 10.60 -16.43 -0.17 1.35 16 17 C -0.15 -2.65 6.07 -24.58 -0.15 -2.80 16 18 C 0.15 3.60 5.87 -2.53 -0.01 3.59 16 19 N -0.60 -15.72 3.39 -170.07 -0.58 -16.30 16 20 C -0.22 -6.19 10.27 -15.06 -0.15 -6.34 16 21 H 0.08 2.12 7.83 -52.49 -0.41 1.70 16 22 C -0.01 -0.37 5.49 -17.43 -0.10 -0.47 16 23 N -0.93 -26.90 10.09 55.49 0.56 -26.34 16 24 Si 0.91 22.46 29.55 -169.99 -5.02 17.43 16 25 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 26 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 27 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 28 C 0.14 3.08 6.20 -3.06 -0.02 3.06 16 29 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.06 0.97 8.12 -51.93 -0.42 0.55 16 31 H 0.08 1.32 6.03 -51.93 -0.31 1.01 16 32 H 0.40 5.40 7.44 -40.82 -0.30 5.10 16 33 H 0.20 1.83 7.50 -52.48 -0.39 1.43 16 34 H 0.13 0.93 6.71 -52.49 -0.35 0.57 16 35 H 0.13 0.56 8.06 -52.49 -0.42 0.14 16 36 H 0.13 0.49 8.06 -52.49 -0.42 0.06 16 37 H 0.13 0.62 8.06 -52.48 -0.42 0.20 16 38 H 0.14 1.33 7.68 -52.49 -0.40 0.93 16 39 H 0.19 1.94 7.01 -52.49 -0.37 1.57 16 40 H 0.08 1.37 8.05 -51.93 -0.42 0.95 16 41 H 0.06 0.95 8.07 -51.93 -0.42 0.54 16 42 H 0.11 2.86 5.88 -51.93 -0.31 2.56 16 43 H 0.01 0.26 8.14 -51.93 -0.42 -0.17 16 44 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 45 H 0.03 0.76 6.90 -51.93 -0.36 0.40 16 46 H 0.03 0.69 7.81 -51.93 -0.41 0.28 16 LS Contribution 376.97 15.07 5.68 5.68 Total: -1.00 -34.37 376.97 -9.16 -43.53 By element: Atomic # 1 Polarization: 11.15 SS G_CDS: -6.12 Total: 5.03 kcal Atomic # 6 Polarization: 3.97 SS G_CDS: -3.83 Total: 0.14 kcal Atomic # 7 Polarization: -61.54 SS G_CDS: 0.07 Total: -61.47 kcal Atomic # 8 Polarization: -10.41 SS G_CDS: 0.07 Total: -10.33 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.02 Total: 17.43 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -34.37 -9.16 -43.53 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046461061.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.802 kcal (2) G-P(sol) polarization free energy of solvation -34.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.525 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds