Wall clock time and date at job start Tue Mar 31 2020 23:11:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46504 * 110.64397 * 2 1 4 4 C 1.34777 * 119.99854 * 56.85441 * 3 2 1 5 5 O 1.21613 * 119.99966 * 0.02562 * 4 3 2 6 6 C 1.47411 * 120.00082 * 180.27826 * 4 3 2 7 7 C 1.41328 * 126.40897 * 359.41220 * 6 4 3 8 8 N 1.30476 * 108.06807 * 179.87762 * 7 6 4 9 9 N 1.39928 * 108.91369 * 0.38897 * 8 7 6 10 10 C 1.40164 * 125.77273 * 179.72976 * 9 8 7 11 11 C 1.38836 * 120.06675 * 179.75254 * 10 9 8 12 12 C 1.38124 * 119.93159 * 179.72433 * 11 10 9 13 13 C 1.38284 * 120.06402 * 0.54352 * 12 11 10 14 14 C 1.38284 * 120.13485 * 359.72802 * 13 12 11 15 15 C 1.38117 * 120.06941 * 0.02562 * 14 13 12 16 16 C 1.34543 * 108.45946 * 359.74989 * 9 8 7 17 17 C 1.55158 * 110.72039 * 236.86036 * 2 1 3 18 18 C 1.54915 * 101.57897 * 205.95664 * 17 2 1 19 19 N 1.47424 * 104.83173 * 37.01111 * 18 17 2 20 20 C 1.36941 * 125.64964 * 155.90882 * 19 18 17 21 21 H 1.07998 * 120.00087 * 179.97438 * 20 19 18 22 22 C 1.38811 * 119.99833 * 359.96917 * 20 19 18 23 23 N 1.31620 * 119.99853 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 120.00255 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.47159 * 59.99403 * 24 22 20 26 26 H 1.48490 * 109.47423 * 180.02562 * 24 22 20 27 27 H 1.48509 * 109.46901 * 300.00008 * 24 22 20 28 28 C 1.47021 * 108.70333 * 335.86819 * 19 18 17 29 29 H 1.09004 * 109.46964 * 60.69939 * 1 2 3 30 30 H 1.09001 * 109.47462 * 180.70102 * 1 2 3 31 31 H 1.09001 * 109.47063 * 300.69900 * 1 2 3 32 32 H 0.97000 * 120.00410 * 236.86167 * 3 2 1 33 33 H 1.08004 * 125.96808 * 0.04165 * 7 6 4 34 34 H 1.08001 * 120.04002 * 359.96950 * 11 10 9 35 35 H 1.07993 * 119.96901 * 180.29818 * 12 11 10 36 36 H 1.07998 * 119.93571 * 179.74718 * 13 12 11 37 37 H 1.08005 * 119.96614 * 179.97438 * 14 13 12 38 38 H 1.08001 * 120.03838 * 179.97438 * 15 14 13 39 39 H 1.07999 * 126.31115 * 179.97438 * 16 9 8 40 40 H 1.08995 * 111.00163 * 324.02998 * 17 2 1 41 41 H 1.08997 * 111.00836 * 87.84617 * 17 2 1 42 42 H 1.09002 * 110.36309 * 155.84395 * 18 17 2 43 43 H 1.08994 * 110.36718 * 278.16968 * 18 17 2 44 44 H 0.97001 * 119.99908 * 179.97438 * 23 22 20 45 45 H 1.09003 * 109.88522 * 241.64615 * 28 19 18 46 46 H 1.09001 * 109.88570 * 120.47949 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0465 1.3710 0.0000 4 6 1.6869 2.2266 0.9773 5 8 0.9340 1.8604 1.8594 6 6 2.2017 3.6078 0.9740 7 6 3.0836 4.1721 0.0246 8 7 3.3014 5.4134 0.3624 9 7 2.5874 5.6973 1.5318 10 6 2.5731 6.9266 2.2050 11 6 1.8151 7.0793 3.3581 12 6 1.8075 8.2903 4.0225 13 6 2.5450 9.3531 3.5339 14 6 3.2965 9.2057 2.3825 15 6 3.3121 7.9958 1.7166 16 6 1.9173 4.5906 1.9010 17 6 2.0789 -0.7934 -1.2152 18 6 3.4652 -1.2446 -0.6913 19 7 3.2494 -1.5470 0.7354 20 6 4.0124 -2.3918 1.4965 21 1 3.7713 -2.5469 2.5377 22 6 5.0958 -3.0490 0.9296 23 7 5.3899 -2.8597 -0.3392 24 14 6.1363 -4.2019 1.9676 25 1 5.2851 -5.2999 2.4922 26 1 7.2238 -4.7734 1.1335 27 1 6.7275 -3.4485 3.1026 28 6 2.0798 -0.7906 1.2059 29 1 -0.3633 0.5030 -0.8962 30 1 -0.3634 -1.0276 0.0126 31 1 -0.3633 0.5247 0.8837 32 1 2.6472 1.6630 -0.7034 33 1 3.5019 3.6651 -0.8324 34 1 1.2351 6.2511 3.7375 35 1 1.2219 8.4083 4.9222 36 1 2.5343 10.3002 4.0528 37 1 3.8712 10.0377 2.0031 38 1 3.8989 7.8813 0.8171 39 1 1.2756 4.4895 2.7638 40 1 1.4469 -1.6528 -1.4383 41 1 2.1814 -0.1491 -2.0884 42 1 3.7992 -2.1364 -1.2217 43 1 4.1929 -0.4409 -0.8029 44 1 6.1472 -3.3186 -0.7353 45 1 2.3774 -0.1015 1.9963 46 1 1.3190 -1.4772 1.5770 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046461061.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:11:36 Heat of formation + Delta-G solvation = 86.035917 kcal Electronic energy + Delta-G solvation = -28687.208672 eV Core-core repulsion = 24771.745787 eV Total energy + Delta-G solvation = -3915.462885 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.82508 -41.04124 -39.91977 -38.68861 -35.69331 -34.79245 -33.56118 -32.35592 -31.83658 -31.16251 -30.38525 -29.89844 -27.52046 -25.68368 -24.95880 -24.32353 -23.16080 -22.18593 -21.84918 -21.15888 -20.34128 -19.68485 -18.89493 -17.78420 -17.13518 -16.90933 -16.68924 -16.64424 -16.36714 -15.78093 -15.74509 -15.48960 -15.22294 -14.97426 -14.60450 -14.53364 -14.27418 -14.00577 -13.86614 -13.78502 -13.53425 -13.27429 -13.08343 -12.81622 -12.74520 -12.65289 -12.45824 -12.08717 -12.01876 -11.98467 -11.90757 -11.66363 -11.51281 -11.48292 -10.73183 -10.66147 -10.33088 -10.05973 -9.96282 -9.20292 -8.86391 -7.77107 -5.20283 -0.35361 0.29702 0.78199 1.10529 1.14622 1.45358 1.48241 1.54732 2.25697 2.44270 2.49685 2.75105 3.26800 3.32391 3.55541 3.66615 3.74474 3.84712 3.87297 4.00062 4.06361 4.11853 4.21436 4.22231 4.39228 4.47965 4.54575 4.62561 4.68081 4.71910 4.87476 4.91782 4.95372 4.98841 5.05728 5.10015 5.14854 5.31926 5.37183 5.40071 5.44424 5.48583 5.64873 5.66687 5.73393 5.83453 6.01910 6.33067 6.33332 6.69031 7.12920 7.34093 7.79274 8.42795 9.23976 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.015483 B = 0.002403 C = 0.002268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1808.036504 B =11647.906298 C =12340.000060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.173 3.827 3 N -0.698 5.698 4 C 0.596 3.404 5 O -0.577 6.577 6 C -0.294 4.294 7 C 0.096 3.904 8 N -0.312 5.312 9 N -0.312 5.312 10 C 0.119 3.881 11 C -0.145 4.145 12 C -0.093 4.093 13 C -0.121 4.121 14 C -0.099 4.099 15 C -0.131 4.131 16 C 0.126 3.874 17 C -0.128 4.128 18 C 0.154 3.846 19 N -0.623 5.623 20 C -0.242 4.242 21 H 0.069 0.931 22 C -0.062 4.062 23 N -0.943 5.943 24 Si 0.977 3.023 25 H -0.277 1.277 26 H -0.288 1.288 27 H -0.284 1.284 28 C 0.136 3.864 29 H 0.076 0.924 30 H 0.068 0.932 31 H 0.063 0.937 32 H 0.408 0.592 33 H 0.221 0.779 34 H 0.142 0.858 35 H 0.162 0.838 36 H 0.160 0.840 37 H 0.156 0.844 38 H 0.128 0.872 39 H 0.208 0.792 40 H 0.084 0.916 41 H 0.102 0.898 42 H 0.076 0.924 43 H -0.006 1.006 44 H 0.248 0.752 45 H 0.006 0.994 46 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.901 25.330 1.859 26.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.087 3.913 3 N -0.348 5.348 4 C 0.384 3.616 5 O -0.458 6.458 6 C -0.309 4.309 7 C -0.092 4.092 8 N -0.130 5.130 9 N -0.084 5.084 10 C 0.028 3.972 11 C -0.166 4.166 12 C -0.111 4.111 13 C -0.139 4.139 14 C -0.117 4.117 15 C -0.151 4.151 16 C -0.022 4.022 17 C -0.166 4.166 18 C 0.030 3.970 19 N -0.349 5.349 20 C -0.371 4.371 21 H 0.087 0.913 22 C -0.254 4.254 23 N -0.593 5.593 24 Si 0.806 3.194 25 H -0.203 1.203 26 H -0.214 1.214 27 H -0.210 1.210 28 C 0.010 3.990 29 H 0.095 0.905 30 H 0.087 0.913 31 H 0.082 0.918 32 H 0.245 0.755 33 H 0.238 0.762 34 H 0.160 0.840 35 H 0.179 0.821 36 H 0.177 0.823 37 H 0.173 0.827 38 H 0.146 0.854 39 H 0.224 0.776 40 H 0.102 0.898 41 H 0.120 0.880 42 H 0.094 0.906 43 H 0.012 0.988 44 H 0.058 0.942 45 H 0.024 0.976 46 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -8.637 26.075 2.170 27.554 hybrid contribution 0.832 -1.660 0.424 1.905 sum -7.805 24.414 2.594 25.763 Atomic orbital electron populations 1.21987 0.92076 1.02796 1.03216 1.21144 0.94375 0.80496 0.95332 1.45648 1.49780 1.11059 1.28362 1.17337 0.79541 0.83813 0.80903 1.90703 1.38389 1.78814 1.37903 1.20308 1.11880 0.95898 1.02782 1.24658 0.94471 0.90854 0.99226 1.77182 1.18537 1.17666 0.99573 1.45817 1.34321 1.08793 1.19467 1.18016 1.01808 0.82892 0.94453 1.21190 1.00446 1.00839 0.94096 1.21407 0.98531 0.91127 1.00060 1.21707 0.95860 1.00353 0.95998 1.21423 0.98639 0.96436 0.95210 1.21055 0.99949 0.92515 1.01579 1.23274 0.94909 0.84855 0.99169 1.23215 0.97475 0.99755 0.96187 1.21771 0.92354 0.98740 0.84164 1.44778 1.31198 1.50481 1.08465 1.19334 1.06962 1.17558 0.93255 0.91261 1.25540 0.99876 1.02290 0.97730 1.70003 1.30219 1.47137 1.11939 0.85172 0.78085 0.78736 0.77440 1.20328 1.21408 1.21028 1.21694 0.89064 0.92736 0.95520 0.90510 0.91320 0.91836 0.75544 0.76234 0.84020 0.82069 0.82257 0.82676 0.85354 0.77573 0.89777 0.87968 0.90596 0.98803 0.94187 0.97592 0.95881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.30 8.38 71.98 0.60 -3.70 16 2 C 0.17 6.07 0.81 4.79 0.00 6.07 16 3 N -0.70 -21.78 5.13 -420.78 -2.16 -23.94 16 4 C 0.60 19.61 7.03 86.66 0.61 20.22 16 5 O -0.58 -22.33 13.89 -4.07 -0.06 -22.39 16 6 C -0.29 -8.19 6.13 -20.14 -0.12 -8.31 16 7 C 0.10 2.34 11.50 85.65 0.99 3.33 16 8 N -0.31 -8.21 11.77 -56.23 -0.66 -8.87 16 9 N -0.31 -7.70 3.77 -186.20 -0.70 -8.40 16 10 C 0.12 2.46 6.68 38.10 0.25 2.72 16 11 C -0.15 -2.25 9.45 22.39 0.21 -2.04 16 12 C -0.09 -0.98 10.04 22.25 0.22 -0.75 16 13 C -0.12 -1.12 10.04 22.29 0.22 -0.90 16 14 C -0.10 -1.19 10.04 22.25 0.22 -0.97 16 15 C -0.13 -2.40 9.65 22.39 0.22 -2.19 16 16 C 0.13 3.15 10.60 84.24 0.89 4.05 16 17 C -0.13 -4.41 6.07 31.99 0.19 -4.22 16 18 C 0.15 7.38 5.87 86.86 0.51 7.89 16 19 N -0.62 -33.25 3.39 -691.98 -2.35 -35.60 16 20 C -0.24 -14.18 10.27 84.03 0.86 -13.32 16 21 H 0.07 4.01 7.83 -2.91 -0.02 3.99 16 22 C -0.06 -3.55 5.49 84.86 0.47 -3.09 16 23 N -0.94 -55.91 10.09 21.65 0.22 -55.69 16 24 Si 0.98 46.73 29.55 68.60 2.03 48.76 16 25 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 26 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 27 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 28 C 0.14 6.26 6.20 86.73 0.54 6.80 16 29 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 30 H 0.07 1.98 8.12 -2.39 -0.02 1.96 16 31 H 0.06 2.13 6.03 -2.39 -0.01 2.12 16 32 H 0.41 10.62 7.44 -92.71 -0.69 9.93 16 33 H 0.22 3.89 7.50 -2.91 -0.02 3.87 16 34 H 0.14 1.82 6.71 -2.91 -0.02 1.80 16 35 H 0.16 0.77 8.06 -2.91 -0.02 0.74 16 36 H 0.16 0.50 8.06 -2.91 -0.02 0.48 16 37 H 0.16 1.06 8.06 -2.91 -0.02 1.04 16 38 H 0.13 2.53 7.68 -2.91 -0.02 2.51 16 39 H 0.21 4.18 7.01 -2.91 -0.02 4.16 16 40 H 0.08 2.82 8.05 -2.39 -0.02 2.80 16 41 H 0.10 2.76 8.07 -2.39 -0.02 2.74 16 42 H 0.08 4.14 5.88 -2.39 -0.01 4.13 16 43 H -0.01 -0.30 8.14 -2.39 -0.02 -0.32 16 44 H 0.25 14.28 8.31 -92.71 -0.77 13.50 16 45 H 0.01 0.31 6.90 -2.39 -0.02 0.29 16 46 H 0.02 1.08 7.81 -2.39 -0.02 1.06 16 Total: -1.00 -77.02 376.97 3.53 -73.49 By element: Atomic # 1 Polarization: 20.73 SS G_CDS: 0.32 Total: 21.06 kcal Atomic # 6 Polarization: 4.70 SS G_CDS: 6.89 Total: 11.60 kcal Atomic # 7 Polarization: -126.86 SS G_CDS: -5.65 Total: -132.51 kcal Atomic # 8 Polarization: -22.33 SS G_CDS: -0.06 Total: -22.39 kcal Atomic # 14 Polarization: 46.73 SS G_CDS: 2.03 Total: 48.76 kcal Total: -77.02 3.53 -73.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046461061.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.522 kcal (2) G-P(sol) polarization free energy of solvation -77.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.486 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds