Wall clock time and date at job start Tue Mar 31 2020 23:11:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46502 * 110.91392 * 2 1 4 4 C 1.34778 * 119.99873 * 62.45132 * 3 2 1 5 5 O 1.21570 * 120.00065 * 359.97438 * 4 3 2 6 6 C 1.47745 * 119.99895 * 180.02562 * 4 3 2 7 7 C 1.41176 * 126.33194 * 179.71326 * 6 4 3 8 8 C 1.36680 * 105.44699 * 179.90129 * 7 6 4 9 9 C 1.48005 * 126.59577 * 180.09715 * 8 7 6 10 10 C 1.39486 * 120.13632 * 0.02562 * 9 8 7 11 11 C 1.37987 * 119.86023 * 179.69548 * 10 9 8 12 12 C 1.38335 * 120.13446 * 0.60428 * 11 10 9 13 13 C 1.38340 * 120.28031 * 359.67506 * 12 11 10 14 14 C 1.37980 * 120.13369 * 0.02562 * 13 12 11 15 15 N 1.36372 * 106.80937 * 0.35515 * 8 7 6 16 16 H 0.96994 * 125.00859 * 179.80212 * 15 8 7 17 17 N 1.28459 * 109.97424 * 359.76477 * 15 8 7 18 18 C 1.55448 * 111.11787 * 236.00911 * 2 1 3 19 19 C 1.54321 * 102.96961 * 206.45980 * 18 2 1 20 20 N 1.47026 * 107.26791 * 22.19024 * 19 18 2 21 21 C 1.36940 * 125.64258 * 181.03445 * 20 19 18 22 22 H 1.08003 * 119.99660 * 180.02562 * 21 20 19 23 23 C 1.38811 * 120.00559 * 0.02875 * 21 20 19 24 24 N 1.31617 * 119.99776 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 120.00230 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.46531 * 60.00328 * 25 23 21 27 27 H 1.48502 * 109.47014 * 179.97438 * 25 23 21 28 28 H 1.48492 * 109.47009 * 300.00047 * 25 23 21 29 29 C 1.47419 * 108.70576 * 1.06162 * 20 19 18 30 30 H 1.09000 * 109.47194 * 297.54709 * 1 2 3 31 31 H 1.09001 * 109.47578 * 57.55154 * 1 2 3 32 32 H 1.09003 * 109.46933 * 177.54882 * 1 2 3 33 33 H 0.97001 * 120.00055 * 242.45381 * 3 2 1 34 34 H 1.07999 * 127.27532 * 0.02562 * 7 6 4 35 35 H 1.08000 * 120.07303 * 359.97438 * 10 9 8 36 36 H 1.07998 * 119.92965 * 180.27953 * 11 10 9 37 37 H 1.08008 * 119.86139 * 179.69716 * 12 11 10 38 38 H 1.07994 * 119.93270 * 179.97438 * 13 12 11 39 39 H 1.08000 * 120.06882 * 179.97438 * 14 13 12 40 40 H 1.08998 * 110.70855 * 88.08785 * 18 2 1 41 41 H 1.08998 * 110.85957 * 324.90400 * 18 2 1 42 42 H 1.08998 * 109.88101 * 262.77542 * 19 18 2 43 43 H 1.09000 * 109.88483 * 141.60664 * 19 18 2 44 44 H 0.97004 * 120.00521 * 179.97438 * 24 23 21 45 45 H 1.09002 * 110.36926 * 94.70918 * 29 20 19 46 46 H 1.08995 * 110.36556 * 216.92202 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0530 1.3685 0.0000 4 6 1.7892 2.1907 1.0349 5 8 1.1170 1.7968 1.9681 6 6 2.3161 3.5710 1.0346 7 6 2.1186 4.5419 2.0403 8 6 2.7883 5.6530 1.6102 9 6 2.8889 6.9505 2.3150 10 6 2.2616 7.1282 3.5482 11 6 2.3644 8.3382 4.2033 12 6 3.0773 9.3780 3.6337 13 6 3.6968 9.2100 2.4082 14 6 3.6066 8.0028 1.7461 15 7 3.3412 5.3380 0.4040 16 1 3.8739 5.9404 -0.1383 17 7 3.0530 4.1255 0.0925 18 6 2.0901 -0.8107 -1.2023 19 6 3.4707 -1.2757 -0.6934 20 7 3.4280 -1.2429 0.7759 21 6 4.4639 -1.5649 1.6117 22 1 4.3314 -1.5089 2.6821 23 6 5.6841 -1.9633 1.0833 24 7 5.8454 -2.0320 -0.2211 25 14 7.0973 -2.4018 2.2235 26 1 6.6965 -3.5355 3.0950 27 1 8.2812 -2.7928 1.4168 28 1 7.4373 -1.2266 3.0650 29 6 2.0853 -0.8066 1.2002 30 1 -0.3633 0.4753 0.9111 31 1 -0.3634 0.5514 -0.8672 32 1 -0.3633 -1.0268 -0.0440 33 1 2.5890 1.6829 -0.7448 34 1 1.5585 4.4296 2.9569 35 1 1.7004 6.3189 3.9914 36 1 1.8829 8.4755 5.1602 37 1 3.1508 10.3249 4.1481 38 1 4.2515 10.0256 1.9685 39 1 4.0903 7.8729 0.7893 40 1 2.1972 -0.1737 -2.0803 41 1 1.4525 -1.6665 -1.4240 42 1 4.2461 -0.6014 -1.0569 43 1 3.6693 -2.2913 -1.0359 44 1 6.6982 -2.3100 -0.5905 45 1 1.4520 -1.6704 1.4024 46 1 2.1542 -0.1725 2.0841 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046464154.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:11:12 Heat of formation + Delta-G solvation = 92.552252 kcal Electronic energy + Delta-G solvation = -28852.615056 eV Core-core repulsion = 24937.434740 eV Total energy + Delta-G solvation = -3915.180316 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.65967 -39.59217 -39.23659 -37.09052 -33.87724 -33.03467 -32.30647 -31.63589 -31.08759 -29.89651 -28.98795 -28.58457 -25.60615 -24.47456 -23.61396 -23.38799 -22.69322 -21.03656 -20.40142 -19.82210 -18.87644 -18.64121 -17.13369 -16.69575 -16.43518 -15.78753 -15.53176 -15.26075 -15.07909 -14.55335 -14.30814 -14.06701 -13.93360 -13.63612 -13.58760 -13.50186 -13.19956 -13.05467 -12.69314 -11.99177 -11.84226 -11.79073 -11.72025 -11.58151 -11.42921 -10.94090 -10.84201 -10.80926 -10.38025 -10.28379 -10.22876 -10.05089 -9.92906 -9.57791 -9.40395 -9.37746 -9.36060 -8.55757 -8.44853 -8.40227 -6.71413 -5.62858 -2.94224 0.53580 1.00196 1.73145 2.23837 2.64270 3.46292 3.48951 3.49865 3.50876 3.51627 3.75408 4.20845 4.35765 4.54245 4.54682 4.57934 4.73531 4.97560 5.05636 5.13135 5.27823 5.37061 5.46171 5.54803 5.56889 5.61917 5.65263 5.69824 5.81224 6.01427 6.08612 6.11622 6.13131 6.21116 6.23441 6.28296 6.42628 6.48038 6.53284 6.62077 6.76290 6.80398 6.92006 7.21832 7.62474 7.65585 7.70767 7.88222 8.06334 8.34638 8.64365 9.31692 9.91974 10.58369 11.49257 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012093 B = 0.002806 C = 0.002494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2314.876338 B = 9976.599113 C =11223.378275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.155 3.845 3 N -0.686 5.686 4 C 0.605 3.395 5 O -0.532 6.532 6 C -0.001 4.001 7 C -0.153 4.153 8 C 0.044 3.956 9 C -0.014 4.014 10 C -0.096 4.096 11 C -0.112 4.112 12 C -0.119 4.119 13 C -0.113 4.113 14 C -0.118 4.118 15 N -0.380 5.380 16 H 0.444 0.556 17 N -0.243 5.243 18 C -0.146 4.146 19 C 0.178 3.822 20 N -0.603 5.603 21 C -0.219 4.219 22 H 0.076 0.924 23 C -0.011 4.011 24 N -0.925 5.925 25 Si 0.910 3.090 26 H -0.285 1.285 27 H -0.291 1.291 28 H -0.287 1.287 29 C 0.130 3.870 30 H 0.071 0.929 31 H 0.050 0.950 32 H 0.063 0.937 33 H 0.404 0.596 34 H 0.166 0.834 35 H 0.132 0.868 36 H 0.128 0.872 37 H 0.124 0.876 38 H 0.126 0.874 39 H 0.118 0.882 40 H 0.064 0.936 41 H 0.073 0.927 42 H 0.045 0.955 43 H 0.043 0.957 44 H 0.251 0.749 45 H 0.026 0.974 46 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.432 22.605 0.985 24.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.069 3.931 3 N -0.336 5.336 4 C 0.389 3.611 5 O -0.408 6.408 6 C -0.161 4.161 7 C -0.181 4.181 8 C -0.080 4.080 9 C -0.016 4.016 10 C -0.115 4.115 11 C -0.130 4.130 12 C -0.137 4.137 13 C -0.131 4.131 14 C -0.137 4.137 15 N -0.095 5.095 16 H 0.289 0.711 17 N -0.079 5.079 18 C -0.185 4.185 19 C 0.053 3.947 20 N -0.329 5.329 21 C -0.348 4.348 22 H 0.093 0.907 23 C -0.206 4.206 24 N -0.574 5.574 25 Si 0.741 3.259 26 H -0.212 1.212 27 H -0.217 1.217 28 H -0.213 1.213 29 C 0.004 3.996 30 H 0.090 0.910 31 H 0.069 0.931 32 H 0.082 0.918 33 H 0.239 0.761 34 H 0.183 0.817 35 H 0.150 0.850 36 H 0.146 0.854 37 H 0.142 0.858 38 H 0.144 0.856 39 H 0.136 0.864 40 H 0.082 0.918 41 H 0.092 0.908 42 H 0.063 0.937 43 H 0.062 0.938 44 H 0.061 0.939 45 H 0.044 0.956 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -8.223 21.902 0.593 23.402 hybrid contribution 1.245 0.443 0.566 1.438 sum -6.978 22.345 1.159 23.438 Atomic orbital electron populations 1.21989 0.94269 1.02040 1.02437 1.21579 0.92561 0.80545 0.98425 1.45648 1.53385 1.12419 1.22113 1.16749 0.79743 0.82091 0.82562 1.90740 1.39664 1.75251 1.35101 1.22030 1.03002 0.96816 0.94271 1.21703 1.04094 0.90684 1.01613 1.19844 1.02825 0.95767 0.89566 1.17923 0.99118 0.89890 0.94663 1.21206 0.98672 0.98041 0.93579 1.21135 0.98952 0.92901 1.00034 1.21269 0.97559 0.99166 0.95724 1.21038 0.99625 0.97059 0.95413 1.21074 0.99500 0.93179 0.99953 1.43506 1.40054 1.09920 1.16000 0.71142 1.73550 1.15494 0.93685 1.25194 1.23275 1.00486 0.98823 0.95894 1.21149 0.90020 0.99833 0.83705 1.44427 1.07795 1.78850 1.01808 1.19018 0.89421 1.37375 0.88949 0.90661 1.24753 0.97699 1.02185 0.95989 1.69940 1.24044 1.54159 1.09212 0.86218 0.81936 0.78245 0.79522 1.21215 1.21693 1.21336 1.21898 0.87545 0.94909 0.95297 0.90983 0.93091 0.91760 0.76144 0.81691 0.84968 0.85359 0.85785 0.85641 0.86390 0.91773 0.90813 0.93666 0.93841 0.93905 0.95625 0.92537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.35 8.60 37.16 0.32 -2.03 16 2 C 0.16 2.90 0.83 -129.51 -0.11 2.79 16 3 N -0.69 -12.45 5.17 -46.44 -0.24 -12.69 16 4 C 0.60 11.26 7.22 -12.37 -0.09 11.17 16 5 O -0.53 -10.92 13.72 5.30 0.07 -10.85 16 6 C 0.00 -0.01 7.11 -82.86 -0.59 -0.60 16 7 C -0.15 -2.13 10.16 -39.03 -0.40 -2.53 16 8 C 0.04 0.51 6.98 -82.41 -0.58 -0.06 16 9 C -0.01 -0.14 5.87 -104.96 -0.62 -0.75 16 10 C -0.10 -0.84 9.58 -39.21 -0.38 -1.21 16 11 C -0.11 -0.81 10.03 -39.64 -0.40 -1.21 16 12 C -0.12 -0.79 10.04 -39.51 -0.40 -1.18 16 13 C -0.11 -0.77 10.03 -39.64 -0.40 -1.17 16 14 C -0.12 -0.92 9.71 -39.21 -0.38 -1.30 16 15 N -0.38 -4.28 6.80 33.31 0.23 -4.05 16 16 H 0.44 3.33 8.08 -190.45 -1.54 1.79 16 17 N -0.24 -3.57 11.89 33.37 0.40 -3.17 16 18 C -0.15 -2.71 6.00 -24.74 -0.15 -2.86 16 19 C 0.18 4.35 5.36 -3.06 -0.02 4.33 16 20 N -0.60 -15.99 3.39 -170.08 -0.58 -16.57 16 21 C -0.22 -6.39 10.28 -15.06 -0.15 -6.54 16 22 H 0.08 2.16 7.83 -52.48 -0.41 1.75 16 23 C -0.01 -0.31 5.49 -17.43 -0.10 -0.41 16 24 N -0.93 -27.69 10.31 55.49 0.57 -27.12 16 25 Si 0.91 22.96 29.55 -169.99 -5.02 17.93 16 26 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 27 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 28 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 29 C 0.13 2.97 6.10 -2.53 -0.02 2.95 16 30 H 0.07 1.22 6.53 -51.93 -0.34 0.88 16 31 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.06 0.93 8.12 -51.93 -0.42 0.51 16 33 H 0.40 6.93 8.21 -40.82 -0.34 6.60 16 34 H 0.17 2.07 7.39 -52.49 -0.39 1.68 16 35 H 0.13 1.04 7.10 -52.49 -0.37 0.67 16 36 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16 37 H 0.12 0.55 8.06 -52.48 -0.42 0.12 16 38 H 0.13 0.57 8.06 -52.49 -0.42 0.15 16 39 H 0.12 0.67 7.20 -52.49 -0.38 0.29 16 40 H 0.06 1.04 8.05 -51.93 -0.42 0.63 16 41 H 0.07 1.26 8.03 -51.93 -0.42 0.84 16 42 H 0.05 1.22 7.38 -51.93 -0.38 0.83 16 43 H 0.04 1.17 7.51 -51.93 -0.39 0.78 16 44 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 45 H 0.03 0.58 8.04 -51.93 -0.42 0.16 16 46 H 0.06 1.39 6.31 -51.93 -0.33 1.06 16 LS Contribution 377.95 15.07 5.70 5.70 Total: -1.00 -34.91 377.95 -10.67 -45.58 By element: Atomic # 1 Polarization: 13.20 SS G_CDS: -7.36 Total: 5.84 kcal Atomic # 6 Polarization: 3.82 SS G_CDS: -4.43 Total: -0.61 kcal Atomic # 7 Polarization: -63.97 SS G_CDS: 0.38 Total: -63.59 kcal Atomic # 8 Polarization: -10.92 SS G_CDS: 0.07 Total: -10.85 kcal Atomic # 14 Polarization: 22.96 SS G_CDS: -5.02 Total: 17.93 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -34.91 -10.67 -45.58 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046464154.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.135 kcal (2) G-P(sol) polarization free energy of solvation -34.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.583 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds