Wall clock time and date at job start Tue Mar 31 2020 23:11:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46502 * 110.91392 * 2 1 4 4 C 1.34778 * 119.99873 * 62.45132 * 3 2 1 5 5 O 1.21570 * 120.00065 * 359.97438 * 4 3 2 6 6 C 1.47745 * 119.99895 * 180.02562 * 4 3 2 7 7 C 1.41176 * 126.33194 * 179.71326 * 6 4 3 8 8 C 1.36680 * 105.44699 * 179.90129 * 7 6 4 9 9 C 1.48005 * 126.59577 * 180.09715 * 8 7 6 10 10 C 1.39486 * 120.13632 * 0.02562 * 9 8 7 11 11 C 1.37987 * 119.86023 * 179.69548 * 10 9 8 12 12 C 1.38335 * 120.13446 * 0.60428 * 11 10 9 13 13 C 1.38340 * 120.28031 * 359.67506 * 12 11 10 14 14 C 1.37980 * 120.13369 * 0.02562 * 13 12 11 15 15 N 1.36372 * 106.80937 * 0.35515 * 8 7 6 16 16 H 0.96994 * 125.00859 * 179.80212 * 15 8 7 17 17 N 1.28459 * 109.97424 * 359.76477 * 15 8 7 18 18 C 1.55448 * 111.11787 * 236.00911 * 2 1 3 19 19 C 1.54321 * 102.96961 * 206.45980 * 18 2 1 20 20 N 1.47026 * 107.26791 * 22.19024 * 19 18 2 21 21 C 1.36940 * 125.64258 * 181.03445 * 20 19 18 22 22 H 1.08003 * 119.99660 * 180.02562 * 21 20 19 23 23 C 1.38811 * 120.00559 * 0.02875 * 21 20 19 24 24 N 1.31617 * 119.99776 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 120.00230 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.46531 * 60.00328 * 25 23 21 27 27 H 1.48502 * 109.47014 * 179.97438 * 25 23 21 28 28 H 1.48492 * 109.47009 * 300.00047 * 25 23 21 29 29 C 1.47419 * 108.70576 * 1.06162 * 20 19 18 30 30 H 1.09000 * 109.47194 * 297.54709 * 1 2 3 31 31 H 1.09001 * 109.47578 * 57.55154 * 1 2 3 32 32 H 1.09003 * 109.46933 * 177.54882 * 1 2 3 33 33 H 0.97001 * 120.00055 * 242.45381 * 3 2 1 34 34 H 1.07999 * 127.27532 * 0.02562 * 7 6 4 35 35 H 1.08000 * 120.07303 * 359.97438 * 10 9 8 36 36 H 1.07998 * 119.92965 * 180.27953 * 11 10 9 37 37 H 1.08008 * 119.86139 * 179.69716 * 12 11 10 38 38 H 1.07994 * 119.93270 * 179.97438 * 13 12 11 39 39 H 1.08000 * 120.06882 * 179.97438 * 14 13 12 40 40 H 1.08998 * 110.70855 * 88.08785 * 18 2 1 41 41 H 1.08998 * 110.85957 * 324.90400 * 18 2 1 42 42 H 1.08998 * 109.88101 * 262.77542 * 19 18 2 43 43 H 1.09000 * 109.88483 * 141.60664 * 19 18 2 44 44 H 0.97004 * 120.00521 * 179.97438 * 24 23 21 45 45 H 1.09002 * 110.36926 * 94.70918 * 29 20 19 46 46 H 1.08995 * 110.36556 * 216.92202 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0530 1.3685 0.0000 4 6 1.7892 2.1907 1.0349 5 8 1.1170 1.7968 1.9681 6 6 2.3161 3.5710 1.0346 7 6 2.1186 4.5419 2.0403 8 6 2.7883 5.6530 1.6102 9 6 2.8889 6.9505 2.3150 10 6 2.2616 7.1282 3.5482 11 6 2.3644 8.3382 4.2033 12 6 3.0773 9.3780 3.6337 13 6 3.6968 9.2100 2.4082 14 6 3.6066 8.0028 1.7461 15 7 3.3412 5.3380 0.4040 16 1 3.8739 5.9404 -0.1383 17 7 3.0530 4.1255 0.0925 18 6 2.0901 -0.8107 -1.2023 19 6 3.4707 -1.2757 -0.6934 20 7 3.4280 -1.2429 0.7759 21 6 4.4639 -1.5649 1.6117 22 1 4.3314 -1.5089 2.6821 23 6 5.6841 -1.9633 1.0833 24 7 5.8454 -2.0320 -0.2211 25 14 7.0973 -2.4018 2.2235 26 1 6.6965 -3.5355 3.0950 27 1 8.2812 -2.7928 1.4168 28 1 7.4373 -1.2266 3.0650 29 6 2.0853 -0.8066 1.2002 30 1 -0.3633 0.4753 0.9111 31 1 -0.3634 0.5514 -0.8672 32 1 -0.3633 -1.0268 -0.0440 33 1 2.5890 1.6829 -0.7448 34 1 1.5585 4.4296 2.9569 35 1 1.7004 6.3189 3.9914 36 1 1.8829 8.4755 5.1602 37 1 3.1508 10.3249 4.1481 38 1 4.2515 10.0256 1.9685 39 1 4.0903 7.8729 0.7893 40 1 2.1972 -0.1737 -2.0803 41 1 1.4525 -1.6665 -1.4240 42 1 4.2461 -0.6014 -1.0569 43 1 3.6693 -2.2913 -1.0359 44 1 6.6982 -2.3100 -0.5905 45 1 1.4520 -1.6704 1.4024 46 1 2.1542 -0.1725 2.0841 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046464154.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:11:11 Heat of formation + Delta-G solvation = 69.496738 kcal Electronic energy + Delta-G solvation = -28853.614818 eV Core-core repulsion = 24937.434740 eV Total energy + Delta-G solvation = -3916.180078 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.69473 -41.07327 -39.86147 -38.75968 -35.68659 -34.06001 -33.51741 -33.04467 -31.86414 -31.48578 -30.34267 -29.82935 -27.51167 -25.85974 -25.08032 -24.29470 -23.42902 -22.23032 -21.91170 -21.26274 -20.37485 -19.47418 -18.94779 -18.04415 -17.27636 -17.02878 -16.89020 -16.64815 -16.06347 -15.83733 -15.76331 -15.57250 -15.38692 -14.90554 -14.72725 -14.26640 -14.24856 -14.06140 -13.86681 -13.80799 -13.52840 -13.39899 -13.07885 -12.82794 -12.75161 -12.42091 -12.16800 -12.06418 -12.00450 -11.99248 -11.91985 -11.70257 -11.57470 -11.04031 -10.89426 -10.70684 -10.51293 -9.98336 -9.91245 -9.20787 -8.86131 -7.85600 -5.19220 -0.17203 0.45159 0.52307 1.36638 1.41543 1.45076 1.51352 1.72053 2.17523 2.39725 2.47932 2.91439 3.23147 3.32398 3.46443 3.57872 3.72216 3.83220 4.02455 4.05791 4.17889 4.19734 4.25434 4.38893 4.43620 4.53419 4.64495 4.70684 4.75013 4.81915 4.89061 4.93504 4.94686 5.05101 5.08020 5.09484 5.19694 5.37317 5.42144 5.47376 5.49799 5.57985 5.63958 5.68082 5.76972 5.93884 6.02096 6.20063 6.50253 6.78831 7.11415 7.22255 7.77699 8.42252 9.24238 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012093 B = 0.002806 C = 0.002494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2314.876338 B = 9976.599113 C =11223.378275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.164 3.836 3 N -0.687 5.687 4 C 0.601 3.399 5 O -0.559 6.559 6 C -0.029 4.029 7 C -0.177 4.177 8 C 0.067 3.933 9 C -0.041 4.041 10 C -0.109 4.109 11 C -0.120 4.120 12 C -0.115 4.115 13 C -0.118 4.118 14 C -0.120 4.120 15 N -0.362 5.362 16 H 0.460 0.540 17 N -0.256 5.256 18 C -0.128 4.128 19 C 0.186 3.814 20 N -0.621 5.621 21 C -0.242 4.242 22 H 0.069 0.931 23 C -0.062 4.062 24 N -0.946 5.946 25 Si 0.975 3.025 26 H -0.277 1.277 27 H -0.288 1.288 28 H -0.283 1.283 29 C 0.127 3.873 30 H 0.057 0.943 31 H 0.075 0.925 32 H 0.081 0.919 33 H 0.408 0.592 34 H 0.169 0.831 35 H 0.131 0.869 36 H 0.148 0.852 37 H 0.150 0.850 38 H 0.151 0.849 39 H 0.137 0.863 40 H 0.093 0.907 41 H 0.097 0.903 42 H 0.013 0.987 43 H 0.011 0.989 44 H 0.247 0.753 45 H 0.031 0.969 46 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.593 25.097 0.806 26.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.077 3.923 3 N -0.336 5.336 4 C 0.386 3.614 5 O -0.437 6.437 6 C -0.188 4.188 7 C -0.205 4.205 8 C -0.058 4.058 9 C -0.043 4.043 10 C -0.128 4.128 11 C -0.138 4.138 12 C -0.133 4.133 13 C -0.136 4.136 14 C -0.139 4.139 15 N -0.080 5.080 16 H 0.309 0.691 17 N -0.093 5.093 18 C -0.166 4.166 19 C 0.061 3.939 20 N -0.347 5.347 21 C -0.371 4.371 22 H 0.087 0.913 23 C -0.255 4.255 24 N -0.595 5.595 25 Si 0.803 3.197 26 H -0.203 1.203 27 H -0.214 1.214 28 H -0.209 1.209 29 C 0.001 3.999 30 H 0.076 0.924 31 H 0.094 0.906 32 H 0.099 0.901 33 H 0.243 0.757 34 H 0.186 0.814 35 H 0.149 0.851 36 H 0.165 0.835 37 H 0.168 0.832 38 H 0.169 0.831 39 H 0.155 0.845 40 H 0.112 0.888 41 H 0.115 0.885 42 H 0.031 0.969 43 H 0.029 0.971 44 H 0.057 0.943 45 H 0.049 0.951 46 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -8.399 24.411 0.396 25.819 hybrid contribution 1.333 -0.168 0.702 1.516 sum -7.066 24.243 1.098 25.276 Atomic orbital electron populations 1.21918 0.91469 1.03439 1.02893 1.21518 0.94396 0.80309 0.96037 1.45668 1.53484 1.12156 1.22317 1.17086 0.79259 0.83002 0.82059 1.90708 1.40926 1.76111 1.35933 1.21804 1.04808 0.96298 0.95919 1.21831 1.05616 0.91154 1.01878 1.20059 1.00765 0.95973 0.88974 1.17984 1.01406 0.89491 0.95440 1.21380 0.98828 0.98916 0.93655 1.21419 0.99116 0.92427 1.00794 1.21677 0.96113 0.99886 0.95609 1.21406 0.99478 0.97285 0.95440 1.21365 0.98775 0.92996 1.00730 1.43554 1.39233 1.09173 1.16027 0.69103 1.73461 1.15740 0.94951 1.25164 1.23156 0.96920 1.00038 0.96525 1.20930 0.92849 0.97362 0.82762 1.44684 1.08603 1.78832 1.02613 1.19300 0.90778 1.37701 0.89297 0.91341 1.25550 0.99973 1.02375 0.97572 1.70149 1.24221 1.54600 1.10576 0.85214 0.78705 0.78063 0.77732 1.20332 1.21411 1.20928 1.22018 0.86305 0.95209 0.96411 0.92360 0.90599 0.90062 0.75656 0.81390 0.85136 0.83470 0.83237 0.83110 0.84498 0.88805 0.88457 0.96882 0.97069 0.94349 0.95143 0.94952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.15 8.60 71.98 0.62 -3.53 16 2 C 0.16 6.03 0.83 5.10 0.00 6.04 16 3 N -0.69 -25.09 5.17 -419.10 -2.17 -27.26 16 4 C 0.60 23.01 7.22 86.76 0.63 23.63 16 5 O -0.56 -23.83 13.72 -3.94 -0.05 -23.88 16 6 C -0.03 -0.98 7.11 42.38 0.30 -0.68 16 7 C -0.18 -5.06 10.16 22.63 0.23 -4.83 16 8 C 0.07 1.54 6.98 40.66 0.28 1.83 16 9 C -0.04 -0.75 5.87 -20.08 -0.12 -0.87 16 10 C -0.11 -1.81 9.58 22.51 0.22 -1.59 16 11 C -0.12 -1.48 10.03 22.23 0.22 -1.26 16 12 C -0.11 -1.16 10.04 22.32 0.22 -0.94 16 13 C -0.12 -1.23 10.03 22.23 0.22 -1.01 16 14 C -0.12 -1.59 9.71 22.51 0.22 -1.37 16 15 N -0.36 -7.87 6.80 -48.52 -0.33 -8.20 16 16 H 0.46 6.17 8.08 -220.00 -1.78 4.39 16 17 N -0.26 -7.51 11.89 -48.34 -0.57 -8.08 16 18 C -0.13 -4.59 6.00 31.88 0.19 -4.40 16 19 C 0.19 9.31 5.36 86.73 0.47 9.77 16 20 N -0.62 -33.98 3.39 -692.01 -2.35 -36.33 16 21 C -0.24 -14.54 10.28 84.03 0.86 -13.68 16 22 H 0.07 4.08 7.83 -2.91 -0.02 4.06 16 23 C -0.06 -3.66 5.49 84.86 0.47 -3.20 16 24 N -0.95 -58.18 10.31 21.65 0.22 -57.96 16 25 Si 0.97 48.03 29.55 68.60 2.03 50.06 16 26 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 27 H -0.29 -13.98 7.11 99.48 0.71 -13.28 16 28 H -0.28 -13.68 7.11 99.48 0.71 -12.97 16 29 C 0.13 5.90 6.10 86.85 0.53 6.43 16 30 H 0.06 1.93 6.53 -2.39 -0.02 1.92 16 31 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 32 H 0.08 2.15 8.12 -2.39 -0.02 2.13 16 33 H 0.41 14.05 8.21 -92.71 -0.76 13.29 16 34 H 0.17 4.47 7.39 -2.91 -0.02 4.45 16 35 H 0.13 2.09 7.10 -2.91 -0.02 2.07 16 36 H 0.15 1.17 8.06 -2.91 -0.02 1.15 16 37 H 0.15 0.73 8.06 -2.91 -0.02 0.71 16 38 H 0.15 0.78 8.06 -2.91 -0.02 0.75 16 39 H 0.14 1.17 7.20 -2.91 -0.02 1.15 16 40 H 0.09 2.84 8.05 -2.39 -0.02 2.82 16 41 H 0.10 3.07 8.03 -2.39 -0.02 3.05 16 42 H 0.01 0.72 7.38 -2.39 -0.02 0.71 16 43 H 0.01 0.62 7.51 -2.39 -0.02 0.60 16 44 H 0.25 14.75 8.31 -92.70 -0.77 13.98 16 45 H 0.03 1.39 8.04 -2.39 -0.02 1.37 16 46 H 0.03 1.65 6.31 -2.39 -0.02 1.64 16 Total: -1.00 -78.75 377.95 0.83 -77.92 By element: Atomic # 1 Polarization: 24.88 SS G_CDS: -1.51 Total: 23.37 kcal Atomic # 6 Polarization: 4.78 SS G_CDS: 5.57 Total: 10.35 kcal Atomic # 7 Polarization: -132.62 SS G_CDS: -5.20 Total: -137.82 kcal Atomic # 8 Polarization: -23.83 SS G_CDS: -0.05 Total: -23.88 kcal Atomic # 14 Polarization: 48.03 SS G_CDS: 2.03 Total: 50.06 kcal Total: -78.75 0.83 -77.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046464154.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.412 kcal (2) G-P(sol) polarization free energy of solvation -78.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.915 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds