Wall clock time and date at job start Tue Mar 31 2020 23:11:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46495 * 110.77734 * 2 1 4 4 C 1.34771 * 120.00404 * 303.24129 * 3 2 1 5 5 O 1.21586 * 119.99908 * 359.97438 * 4 3 2 6 6 C 1.47649 * 120.00198 * 180.02562 * 4 3 2 7 7 C 1.40254 * 120.49323 * 179.97438 * 6 4 3 8 8 C 1.38006 * 118.35502 * 179.97438 * 7 6 4 9 9 C 1.39182 * 119.25634 * 359.97438 * 8 7 6 10 10 N 1.39412 * 119.52601 * 179.97438 * 9 8 7 11 11 C 1.36714 * 125.69205 * 359.69192 * 10 9 8 12 12 C 1.34770 * 108.18603 * 179.82772 * 11 10 9 13 13 C 1.41021 * 107.50126 * 0.42962 * 12 11 10 14 14 C 1.34768 * 107.49860 * 359.72636 * 13 12 11 15 15 N 1.32444 * 120.94186 * 359.97438 * 9 8 7 16 16 C 1.31645 * 121.79537 * 359.72503 * 15 9 8 17 17 C 1.55155 * 110.72013 * 123.24162 * 2 1 3 18 18 C 1.54906 * 101.58202 * 153.86851 * 17 2 1 19 19 N 1.47426 * 104.82959 * 322.98796 * 18 17 2 20 20 C 1.36935 * 125.64598 * 204.09185 * 19 18 17 21 21 H 1.08005 * 119.99877 * 180.02562 * 20 19 18 22 22 C 1.38811 * 120.00369 * 359.75480 * 20 19 18 23 23 N 1.31617 * 119.99773 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00451 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47154 * 89.99247 * 24 22 20 26 26 H 1.48496 * 109.47375 * 209.99772 * 24 22 20 27 27 H 1.48502 * 109.46736 * 329.99467 * 24 22 20 28 28 C 1.47018 * 108.70612 * 24.35650 * 19 18 17 29 29 H 1.08993 * 109.47093 * 296.75972 * 1 2 3 30 30 H 1.09001 * 109.46738 * 56.76245 * 1 2 3 31 31 H 1.09004 * 109.46667 * 176.76102 * 1 2 3 32 32 H 0.97006 * 119.99590 * 123.23814 * 3 2 1 33 33 H 1.07999 * 120.82098 * 359.97438 * 7 6 4 34 34 H 1.08001 * 120.37007 * 180.02562 * 8 7 6 35 35 H 1.08001 * 125.90502 * 359.97438 * 11 10 9 36 36 H 1.08005 * 126.24565 * 180.16090 * 12 11 10 37 37 H 1.08002 * 126.24885 * 179.73285 * 13 12 11 38 38 H 1.08006 * 125.90057 * 179.97438 * 14 13 12 39 39 H 1.07999 * 119.67656 * 180.28854 * 16 15 9 40 40 H 1.08996 * 111.00485 * 35.79080 * 17 2 1 41 41 H 1.09002 * 111.03305 * 271.95773 * 17 2 1 42 42 H 1.09004 * 110.36614 * 204.15475 * 18 17 2 43 43 H 1.08999 * 110.37158 * 81.82525 * 18 17 2 44 44 H 0.97004 * 120.00382 * 180.02562 * 23 22 20 45 45 H 1.09004 * 109.88164 * 118.12840 * 28 19 18 46 46 H 1.08996 * 109.88548 * 239.29371 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0497 1.3697 0.0000 4 6 1.6907 2.2267 -0.9761 5 8 0.9357 1.8630 -1.8571 6 6 2.2149 3.6070 -0.9764 7 6 1.8484 4.5073 -1.9875 8 6 2.3640 5.7867 -1.9444 9 6 3.2231 6.1393 -0.9076 10 7 3.7477 7.4300 -0.8589 11 6 3.5015 8.4257 -1.7628 12 6 4.1815 9.5229 -1.3755 13 6 4.8814 9.1939 -0.1963 14 6 4.5987 7.9094 0.0976 15 7 3.5494 5.2660 0.0332 16 6 3.0760 4.0376 0.0336 17 6 2.0790 -0.7955 1.2137 18 6 3.4633 -1.2497 0.6875 19 7 3.2445 -1.5506 -0.7390 20 6 4.0044 -2.3968 -1.5018 21 1 3.7612 -2.5506 -2.5428 22 6 5.0905 -3.0525 -0.9386 23 7 5.3903 -2.8606 0.3285 24 14 6.1275 -4.2062 -1.9793 25 1 7.2328 -3.4430 -2.6125 26 1 6.6938 -5.2754 -1.1183 27 1 5.2800 -4.8175 -3.0345 28 6 2.0794 -0.7870 -1.2087 29 1 -0.3633 0.4627 0.9175 30 1 -0.3633 0.5633 -0.8596 31 1 -0.3633 -1.0261 -0.0581 32 1 2.6523 1.6598 0.7027 33 1 1.1793 4.2068 -2.7801 34 1 2.1031 6.5065 -2.7061 35 1 2.8692 8.3473 -2.6348 36 1 4.1923 10.4783 -1.8791 37 1 5.5260 9.8513 0.3683 38 1 4.9793 7.3545 0.9425 39 1 3.3612 3.3550 0.8204 40 1 1.4453 -1.6536 1.4374 41 1 2.1849 -0.1524 2.0874 42 1 3.7961 -2.1426 1.2168 43 1 4.1932 -0.4478 0.7984 44 1 6.1495 -3.3185 0.7221 45 1 2.3815 -0.0969 -1.9965 46 1 1.3157 -1.4686 -1.5830 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046707735.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:11:03 Heat of formation + Delta-G solvation = 98.600436 kcal Electronic energy + Delta-G solvation = -28816.027494 eV Core-core repulsion = 24901.109447 eV Total energy + Delta-G solvation = -3914.918047 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.04856 -40.59442 -39.39394 -37.33235 -34.20174 -33.72765 -32.97879 -32.02138 -30.39070 -29.38214 -29.13411 -28.68769 -25.73514 -24.87142 -24.14770 -23.59006 -21.60285 -20.53550 -20.50581 -20.34572 -19.13894 -19.01142 -17.90496 -16.89079 -16.66346 -15.75321 -15.54324 -15.49836 -14.85255 -14.75642 -14.70395 -14.11866 -13.79731 -13.76482 -13.54423 -13.47854 -13.35650 -12.95801 -12.79985 -12.62559 -12.35199 -12.31794 -12.04408 -11.79020 -11.60853 -10.97305 -10.88377 -10.56126 -10.43483 -10.35549 -10.27860 -10.22189 -10.11024 -9.95426 -9.69739 -9.40219 -8.81186 -8.67067 -8.57792 -8.53244 -6.84653 -5.68036 -3.08367 0.09877 0.78667 1.91561 2.23646 2.69091 2.90038 3.20053 3.39268 3.44543 3.46238 3.61779 3.84795 4.23961 4.44393 4.47706 4.50324 4.66850 4.80018 4.99962 5.06642 5.13521 5.14426 5.28523 5.33857 5.44760 5.50038 5.52468 5.68065 5.71023 5.90010 5.90906 5.97445 6.00971 6.11744 6.17031 6.29477 6.40579 6.45543 6.53386 6.63913 6.67389 6.76144 7.00139 7.03786 7.40349 7.42476 7.59680 7.66436 7.80341 8.29377 8.33989 9.20436 9.81091 10.45388 11.36561 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014066 B = 0.002529 C = 0.002330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1990.152015 B =11068.891117 C =12012.742104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.159 3.841 3 N -0.700 5.700 4 C 0.566 3.434 5 O -0.530 6.530 6 C -0.196 4.196 7 C 0.012 3.988 8 C -0.195 4.195 9 C 0.367 3.633 10 N -0.397 5.397 11 C -0.017 4.017 12 C -0.180 4.180 13 C -0.197 4.197 14 C 0.015 3.985 15 N -0.506 5.506 16 C 0.173 3.827 17 C -0.147 4.147 18 C 0.152 3.848 19 N -0.604 5.604 20 C -0.219 4.219 21 H 0.077 0.923 22 C -0.012 4.012 23 N -0.924 5.924 24 Si 0.914 3.086 25 H -0.290 1.290 26 H -0.290 1.290 27 H -0.281 1.281 28 C 0.137 3.863 29 H 0.050 0.950 30 H 0.076 0.924 31 H 0.065 0.935 32 H 0.396 0.604 33 H 0.158 0.842 34 H 0.147 0.853 35 H 0.168 0.832 36 H 0.144 0.856 37 H 0.143 0.857 38 H 0.171 0.829 39 H 0.170 0.830 40 H 0.078 0.922 41 H 0.063 0.937 42 H 0.108 0.892 43 H 0.010 0.990 44 H 0.252 0.748 45 H 0.030 0.970 46 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.080 21.098 1.068 22.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.074 3.926 3 N -0.350 5.350 4 C 0.351 3.649 5 O -0.408 6.408 6 C -0.202 4.202 7 C -0.015 4.015 8 C -0.217 4.217 9 C 0.139 3.861 10 N -0.072 5.072 11 C -0.141 4.141 12 C -0.204 4.204 13 C -0.221 4.221 14 C -0.111 4.111 15 N -0.217 5.217 16 C 0.014 3.986 17 C -0.186 4.186 18 C 0.027 3.973 19 N -0.330 5.330 20 C -0.347 4.347 21 H 0.095 0.905 22 C -0.207 4.207 23 N -0.573 5.573 24 Si 0.745 3.255 25 H -0.217 1.217 26 H -0.216 1.216 27 H -0.207 1.207 28 C 0.011 3.989 29 H 0.069 0.931 30 H 0.095 0.905 31 H 0.084 0.916 32 H 0.232 0.768 33 H 0.176 0.824 34 H 0.165 0.835 35 H 0.186 0.814 36 H 0.162 0.838 37 H 0.161 0.839 38 H 0.189 0.811 39 H 0.187 0.813 40 H 0.097 0.903 41 H 0.082 0.918 42 H 0.126 0.874 43 H 0.028 0.972 44 H 0.062 0.938 45 H 0.048 0.952 46 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -6.980 20.664 1.108 21.839 hybrid contribution 0.534 -0.574 -0.816 1.132 sum -6.446 20.090 0.292 21.101 Atomic orbital electron populations 1.22075 0.93920 1.02636 1.02445 1.21418 0.93210 0.79798 0.98185 1.45925 1.48989 1.12348 1.27775 1.17749 0.81071 0.83947 0.82092 1.90748 1.36024 1.77744 1.36312 1.21119 1.03463 0.96527 0.99093 1.21597 0.93712 0.90352 0.95822 1.21515 1.01355 0.98573 1.00267 1.18432 0.91456 0.84720 0.91466 1.41491 1.36589 1.07074 1.22069 1.21932 1.07053 0.87599 0.97563 1.21067 1.01871 0.98505 0.98952 1.21098 1.05597 0.95540 0.99873 1.22152 0.97299 0.95553 0.96103 1.66988 1.25784 1.03439 1.25523 1.22816 0.89691 0.90385 0.95723 1.23375 1.01313 0.98916 0.94994 1.21942 0.89308 1.00698 0.85319 1.44503 1.30979 1.50147 1.07364 1.19086 1.05983 1.16636 0.93003 0.90542 1.24761 0.98695 1.00776 0.96497 1.69771 1.29901 1.46616 1.11050 0.86070 0.80236 0.80239 0.78975 1.21703 1.21634 1.20684 1.21610 0.90447 0.93142 0.93747 0.93110 0.90475 0.91608 0.76829 0.82444 0.83497 0.81425 0.83805 0.83899 0.81139 0.81267 0.90325 0.91794 0.87391 0.97167 0.93763 0.95183 0.95012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.29 8.44 37.16 0.31 -1.98 16 2 C 0.16 2.72 0.81 -129.98 -0.11 2.61 16 3 N -0.70 -10.40 5.09 -46.90 -0.24 -10.64 16 4 C 0.57 8.55 6.98 -12.42 -0.09 8.46 16 5 O -0.53 -9.42 13.39 5.29 0.07 -9.35 16 6 C -0.20 -2.44 5.89 -104.81 -0.62 -3.06 16 7 C 0.01 0.13 9.70 -38.91 -0.38 -0.25 16 8 C -0.20 -1.89 9.46 -39.32 -0.37 -2.26 16 9 C 0.37 4.21 7.48 -154.56 -1.16 3.06 16 10 N -0.40 -4.30 2.96 -62.65 -0.19 -4.48 16 11 C -0.02 -0.15 10.71 -16.60 -0.18 -0.32 16 12 C -0.18 -1.54 10.86 -39.76 -0.43 -1.98 16 13 C -0.20 -1.82 10.86 -39.76 -0.43 -2.25 16 14 C 0.01 0.15 10.99 -16.61 -0.18 -0.03 16 15 N -0.51 -6.19 9.80 -12.00 -0.12 -6.31 16 16 C 0.17 1.99 10.71 -17.15 -0.18 1.81 16 17 C -0.15 -2.54 6.07 -24.59 -0.15 -2.69 16 18 C 0.15 3.50 5.85 -2.53 -0.01 3.48 16 19 N -0.60 -15.32 3.39 -170.07 -0.58 -15.89 16 20 C -0.22 -6.12 10.27 -15.06 -0.15 -6.28 16 21 H 0.08 2.11 7.83 -52.48 -0.41 1.70 16 22 C -0.01 -0.34 5.49 -17.43 -0.10 -0.44 16 23 N -0.92 -26.49 10.09 55.49 0.56 -25.93 16 24 Si 0.91 22.15 29.55 -169.99 -5.02 17.13 16 25 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 26 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 27 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 28 C 0.14 2.97 6.19 -3.06 -0.02 2.95 16 29 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.08 1.25 5.97 -51.93 -0.31 0.94 16 31 H 0.06 0.96 8.07 -51.93 -0.42 0.54 16 32 H 0.40 4.99 6.54 -40.82 -0.27 4.72 16 33 H 0.16 1.56 7.73 -52.49 -0.41 1.15 16 34 H 0.15 0.98 6.66 -52.49 -0.35 0.64 16 35 H 0.17 0.98 6.96 -52.49 -0.37 0.62 16 36 H 0.14 0.90 8.06 -52.48 -0.42 0.48 16 37 H 0.14 1.03 8.06 -52.49 -0.42 0.60 16 38 H 0.17 1.65 8.03 -52.48 -0.42 1.23 16 39 H 0.17 1.58 6.41 -52.49 -0.34 1.25 16 40 H 0.08 1.34 8.05 -51.93 -0.42 0.93 16 41 H 0.06 0.92 8.07 -51.93 -0.42 0.50 16 42 H 0.11 2.82 5.89 -51.93 -0.31 2.52 16 43 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 44 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 45 H 0.03 0.71 6.90 -51.93 -0.36 0.35 16 46 H 0.03 0.70 7.77 -51.93 -0.40 0.30 16 LS Contribution 373.95 15.07 5.64 5.64 Total: -1.00 -33.25 373.95 -10.13 -43.38 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: -6.02 Total: 5.62 kcal Atomic # 6 Polarization: 5.08 SS G_CDS: -4.24 Total: 0.84 kcal Atomic # 7 Polarization: -62.70 SS G_CDS: -0.56 Total: -63.26 kcal Atomic # 8 Polarization: -9.42 SS G_CDS: 0.07 Total: -9.35 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -33.25 -10.13 -43.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046707735.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.982 kcal (2) G-P(sol) polarization free energy of solvation -33.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.381 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds