Wall clock time and date at job start Tue Mar 31 2020 23:11:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46495 * 110.77734 * 2 1 4 4 C 1.34771 * 120.00404 * 303.24129 * 3 2 1 5 5 O 1.21586 * 119.99908 * 359.97438 * 4 3 2 6 6 C 1.47649 * 120.00198 * 180.02562 * 4 3 2 7 7 C 1.40254 * 120.49323 * 179.97438 * 6 4 3 8 8 C 1.38006 * 118.35502 * 179.97438 * 7 6 4 9 9 C 1.39182 * 119.25634 * 359.97438 * 8 7 6 10 10 N 1.39412 * 119.52601 * 179.97438 * 9 8 7 11 11 C 1.36714 * 125.69205 * 359.69192 * 10 9 8 12 12 C 1.34770 * 108.18603 * 179.82772 * 11 10 9 13 13 C 1.41021 * 107.50126 * 0.42962 * 12 11 10 14 14 C 1.34768 * 107.49860 * 359.72636 * 13 12 11 15 15 N 1.32444 * 120.94186 * 359.97438 * 9 8 7 16 16 C 1.31645 * 121.79537 * 359.72503 * 15 9 8 17 17 C 1.55155 * 110.72013 * 123.24162 * 2 1 3 18 18 C 1.54906 * 101.58202 * 153.86851 * 17 2 1 19 19 N 1.47426 * 104.82959 * 322.98796 * 18 17 2 20 20 C 1.36935 * 125.64598 * 204.09185 * 19 18 17 21 21 H 1.08005 * 119.99877 * 180.02562 * 20 19 18 22 22 C 1.38811 * 120.00369 * 359.75480 * 20 19 18 23 23 N 1.31617 * 119.99773 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00451 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47154 * 89.99247 * 24 22 20 26 26 H 1.48496 * 109.47375 * 209.99772 * 24 22 20 27 27 H 1.48502 * 109.46736 * 329.99467 * 24 22 20 28 28 C 1.47018 * 108.70612 * 24.35650 * 19 18 17 29 29 H 1.08993 * 109.47093 * 296.75972 * 1 2 3 30 30 H 1.09001 * 109.46738 * 56.76245 * 1 2 3 31 31 H 1.09004 * 109.46667 * 176.76102 * 1 2 3 32 32 H 0.97006 * 119.99590 * 123.23814 * 3 2 1 33 33 H 1.07999 * 120.82098 * 359.97438 * 7 6 4 34 34 H 1.08001 * 120.37007 * 180.02562 * 8 7 6 35 35 H 1.08001 * 125.90502 * 359.97438 * 11 10 9 36 36 H 1.08005 * 126.24565 * 180.16090 * 12 11 10 37 37 H 1.08002 * 126.24885 * 179.73285 * 13 12 11 38 38 H 1.08006 * 125.90057 * 179.97438 * 14 13 12 39 39 H 1.07999 * 119.67656 * 180.28854 * 16 15 9 40 40 H 1.08996 * 111.00485 * 35.79080 * 17 2 1 41 41 H 1.09002 * 111.03305 * 271.95773 * 17 2 1 42 42 H 1.09004 * 110.36614 * 204.15475 * 18 17 2 43 43 H 1.08999 * 110.37158 * 81.82525 * 18 17 2 44 44 H 0.97004 * 120.00382 * 180.02562 * 23 22 20 45 45 H 1.09004 * 109.88164 * 118.12840 * 28 19 18 46 46 H 1.08996 * 109.88548 * 239.29371 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0497 1.3697 0.0000 4 6 1.6907 2.2267 -0.9761 5 8 0.9357 1.8630 -1.8571 6 6 2.2149 3.6070 -0.9764 7 6 1.8484 4.5073 -1.9875 8 6 2.3640 5.7867 -1.9444 9 6 3.2231 6.1393 -0.9076 10 7 3.7477 7.4300 -0.8589 11 6 3.5015 8.4257 -1.7628 12 6 4.1815 9.5229 -1.3755 13 6 4.8814 9.1939 -0.1963 14 6 4.5987 7.9094 0.0976 15 7 3.5494 5.2660 0.0332 16 6 3.0760 4.0376 0.0336 17 6 2.0790 -0.7955 1.2137 18 6 3.4633 -1.2497 0.6875 19 7 3.2445 -1.5506 -0.7390 20 6 4.0044 -2.3968 -1.5018 21 1 3.7612 -2.5506 -2.5428 22 6 5.0905 -3.0525 -0.9386 23 7 5.3903 -2.8606 0.3285 24 14 6.1275 -4.2062 -1.9793 25 1 7.2328 -3.4430 -2.6125 26 1 6.6938 -5.2754 -1.1183 27 1 5.2800 -4.8175 -3.0345 28 6 2.0794 -0.7870 -1.2087 29 1 -0.3633 0.4627 0.9175 30 1 -0.3633 0.5633 -0.8596 31 1 -0.3633 -1.0261 -0.0581 32 1 2.6523 1.6598 0.7027 33 1 1.1793 4.2068 -2.7801 34 1 2.1031 6.5065 -2.7061 35 1 2.8692 8.3473 -2.6348 36 1 4.1923 10.4783 -1.8791 37 1 5.5260 9.8513 0.3683 38 1 4.9793 7.3545 0.9425 39 1 3.3612 3.3550 0.8204 40 1 1.4453 -1.6536 1.4374 41 1 2.1849 -0.1524 2.0874 42 1 3.7961 -2.1426 1.2168 43 1 4.1932 -0.4478 0.7984 44 1 6.1495 -3.3185 0.7221 45 1 2.3815 -0.0969 -1.9965 46 1 1.3157 -1.4686 -1.5830 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046707735.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:11:02 Heat of formation + Delta-G solvation = 79.506166 kcal Electronic energy + Delta-G solvation = -28816.855484 eV Core-core repulsion = 24901.109447 eV Total energy + Delta-G solvation = -3915.746036 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.80047 -41.65264 -40.48406 -38.80992 -35.80540 -34.67265 -33.87647 -33.55557 -31.90558 -30.56017 -30.12223 -29.85410 -27.55367 -25.89648 -25.28643 -24.88225 -22.72210 -22.15628 -21.32922 -21.25647 -20.46189 -19.79562 -19.18514 -18.59135 -17.70175 -16.98213 -16.63785 -16.59163 -16.33125 -16.01562 -15.80996 -15.57477 -15.08819 -14.70802 -14.54446 -14.48585 -14.33418 -14.18804 -14.05519 -13.89508 -13.57089 -13.30343 -13.27677 -13.12520 -13.00427 -12.85817 -12.77165 -12.10405 -12.04550 -11.97701 -11.72337 -11.62699 -11.26211 -11.11005 -11.01590 -10.75913 -10.65399 -10.11178 -9.33943 -9.27047 -8.89262 -7.79963 -5.22925 -0.77846 -0.03193 1.11948 1.44606 1.45566 1.49364 1.54642 1.87086 2.02302 2.05612 2.47384 2.68608 3.04635 3.29743 3.44593 3.53373 3.64152 3.68504 3.70680 3.82468 4.01158 4.15203 4.17294 4.25482 4.37648 4.47478 4.63627 4.64175 4.66596 4.71159 4.78552 4.85495 4.89132 4.90939 5.02995 5.09856 5.16868 5.23573 5.29568 5.35544 5.42437 5.59014 5.65199 5.80178 5.82798 6.01246 6.25422 6.30562 6.49904 6.62114 7.09769 7.15253 7.76629 8.39597 9.21527 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014066 B = 0.002529 C = 0.002330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1990.152015 B =11068.891117 C =12012.742104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.171 3.829 3 N -0.697 5.697 4 C 0.567 3.433 5 O -0.561 6.561 6 C -0.211 4.211 7 C 0.011 3.989 8 C -0.185 4.185 9 C 0.358 3.642 10 N -0.407 5.407 11 C -0.022 4.022 12 C -0.187 4.187 13 C -0.197 4.197 14 C -0.016 4.016 15 N -0.524 5.524 16 C 0.175 3.825 17 C -0.128 4.128 18 C 0.154 3.846 19 N -0.623 5.623 20 C -0.241 4.241 21 H 0.070 0.930 22 C -0.061 4.061 23 N -0.943 5.943 24 Si 0.976 3.024 25 H -0.289 1.289 26 H -0.288 1.288 27 H -0.273 1.273 28 C 0.136 3.864 29 H 0.078 0.922 30 H 0.065 0.935 31 H 0.068 0.932 32 H 0.408 0.592 33 H 0.166 0.834 34 H 0.180 0.820 35 H 0.198 0.802 36 H 0.168 0.832 37 H 0.159 0.841 38 H 0.168 0.832 39 H 0.185 0.815 40 H 0.085 0.915 41 H 0.102 0.898 42 H 0.075 0.925 43 H -0.006 1.006 44 H 0.248 0.752 45 H 0.008 0.992 46 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.820 22.896 0.973 24.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.085 3.915 3 N -0.349 5.349 4 C 0.354 3.646 5 O -0.441 6.441 6 C -0.217 4.217 7 C -0.015 4.015 8 C -0.207 4.207 9 C 0.130 3.870 10 N -0.083 5.083 11 C -0.146 4.146 12 C -0.211 4.211 13 C -0.221 4.221 14 C -0.141 4.141 15 N -0.237 5.237 16 C 0.015 3.985 17 C -0.167 4.167 18 C 0.029 3.971 19 N -0.349 5.349 20 C -0.370 4.370 21 H 0.088 0.912 22 C -0.254 4.254 23 N -0.593 5.593 24 Si 0.805 3.195 25 H -0.216 1.216 26 H -0.214 1.214 27 H -0.198 1.198 28 C 0.010 3.990 29 H 0.097 0.903 30 H 0.084 0.916 31 H 0.087 0.913 32 H 0.245 0.755 33 H 0.183 0.817 34 H 0.198 0.802 35 H 0.215 0.785 36 H 0.185 0.815 37 H 0.177 0.823 38 H 0.185 0.815 39 H 0.202 0.798 40 H 0.104 0.896 41 H 0.121 0.879 42 H 0.093 0.907 43 H 0.012 0.988 44 H 0.058 0.942 45 H 0.026 0.974 46 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -7.722 22.503 1.029 23.813 hybrid contribution 0.812 -1.022 -0.831 1.548 sum -6.910 21.480 0.198 22.565 Atomic orbital electron populations 1.21999 0.91810 1.03016 1.03347 1.21207 0.94524 0.80284 0.95497 1.45834 1.49251 1.11437 1.28345 1.18089 0.80380 0.84781 0.81333 1.90729 1.37470 1.78539 1.37368 1.20945 1.04837 0.95364 1.00585 1.21766 0.93628 0.90583 0.95506 1.21775 1.00095 0.98547 1.00246 1.18777 0.91571 0.84990 0.91671 1.41675 1.36871 1.07121 1.22649 1.22550 1.07055 0.87062 0.97899 1.21455 1.01414 0.99514 0.98720 1.21441 1.05258 0.95235 1.00146 1.22329 0.98545 0.96400 0.96821 1.67014 1.26462 1.03788 1.26390 1.23007 0.89166 0.90487 0.95796 1.23224 0.97496 0.99816 0.96146 1.21767 0.92338 0.98772 0.84197 1.44783 1.31588 1.50164 1.08396 1.19362 1.06846 1.17499 0.93305 0.91174 1.25531 0.99810 1.02315 0.97733 1.70007 1.29983 1.47175 1.12129 0.85110 0.78515 0.78247 0.77650 1.21623 1.21437 1.19819 1.21706 0.89188 0.92751 0.95400 0.90345 0.91632 0.91269 0.75466 0.81654 0.80247 0.78534 0.81472 0.82307 0.81466 0.79814 0.89644 0.87923 0.90657 0.98812 0.94188 0.97445 0.95722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.04 8.44 71.98 0.61 -3.44 16 2 C 0.17 5.67 0.81 4.80 0.00 5.67 16 3 N -0.70 -20.08 5.09 -420.55 -2.14 -22.22 16 4 C 0.57 16.86 6.98 86.73 0.61 17.47 16 5 O -0.56 -19.92 13.39 -3.99 -0.05 -19.97 16 6 C -0.21 -5.10 5.89 -19.99 -0.12 -5.21 16 7 C 0.01 0.23 9.70 22.70 0.22 0.45 16 8 C -0.18 -3.19 9.46 22.44 0.21 -2.98 16 9 C 0.36 7.73 7.48 132.92 0.99 8.72 16 10 N -0.41 -8.22 2.96 -352.11 -1.04 -9.26 16 11 C -0.02 -0.33 10.71 83.14 0.89 0.56 16 12 C -0.19 -2.76 10.86 22.16 0.24 -2.52 16 13 C -0.20 -3.35 10.86 22.16 0.24 -3.11 16 14 C -0.02 -0.33 10.99 83.14 0.91 0.59 16 15 N -0.52 -12.48 9.80 -191.89 -1.88 -14.36 16 16 C 0.17 3.89 10.71 85.04 0.91 4.80 16 17 C -0.13 -4.24 6.07 31.98 0.19 -4.04 16 18 C 0.15 7.17 5.85 86.85 0.51 7.67 16 19 N -0.62 -32.36 3.39 -691.97 -2.35 -34.71 16 20 C -0.24 -13.85 10.27 84.03 0.86 -12.98 16 21 H 0.07 3.98 7.83 -2.91 -0.02 3.96 16 22 C -0.06 -3.47 5.49 84.86 0.47 -3.01 16 23 N -0.94 -55.20 10.09 21.65 0.22 -54.98 16 24 Si 0.98 46.13 29.55 68.60 2.03 48.16 16 25 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 26 H -0.29 -13.44 7.11 99.48 0.71 -12.74 16 27 H -0.27 -12.42 7.11 99.48 0.71 -11.72 16 28 C 0.14 5.99 6.19 86.73 0.54 6.53 16 29 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 30 H 0.06 2.04 5.97 -2.39 -0.01 2.03 16 31 H 0.07 1.90 8.07 -2.39 -0.02 1.88 16 32 H 0.41 9.73 6.54 -92.70 -0.61 9.12 16 33 H 0.17 3.06 7.73 -2.91 -0.02 3.04 16 34 H 0.18 1.78 6.66 -2.91 -0.02 1.77 16 35 H 0.20 1.58 6.96 -2.91 -0.02 1.56 16 36 H 0.17 1.57 8.06 -2.91 -0.02 1.55 16 37 H 0.16 2.02 8.06 -2.91 -0.02 2.00 16 38 H 0.17 3.30 8.03 -2.91 -0.02 3.28 16 39 H 0.19 3.28 6.41 -2.91 -0.02 3.26 16 40 H 0.09 2.75 8.05 -2.39 -0.02 2.73 16 41 H 0.10 2.63 8.07 -2.39 -0.02 2.61 16 42 H 0.08 4.03 5.89 -2.38 -0.01 4.02 16 43 H -0.01 -0.30 8.14 -2.39 -0.02 -0.32 16 44 H 0.25 14.09 8.31 -92.71 -0.77 13.32 16 45 H 0.01 0.36 6.90 -2.38 -0.02 0.35 16 46 H 0.02 1.11 7.77 -2.39 -0.02 1.09 16 Total: -1.00 -73.94 373.95 3.48 -70.46 By element: Atomic # 1 Polarization: 21.32 SS G_CDS: 0.41 Total: 21.73 kcal Atomic # 6 Polarization: 6.88 SS G_CDS: 8.29 Total: 15.17 kcal Atomic # 7 Polarization: -128.35 SS G_CDS: -7.19 Total: -135.54 kcal Atomic # 8 Polarization: -19.92 SS G_CDS: -0.05 Total: -19.97 kcal Atomic # 14 Polarization: 46.13 SS G_CDS: 2.03 Total: 48.16 kcal Total: -73.94 3.48 -70.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046707735.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.967 kcal (2) G-P(sol) polarization free energy of solvation -73.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.461 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds