Wall clock time and date at job start Tue Mar 31 2020 23:10:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46496 * 110.88883 * 2 1 4 4 C 1.34775 * 120.00390 * 303.87943 * 3 2 1 5 5 O 1.21557 * 119.99333 * 359.97438 * 4 3 2 6 6 C 1.47856 * 120.00387 * 180.02562 * 4 3 2 7 7 C 1.39614 * 120.11075 * 359.97438 * 6 4 3 8 8 C 1.37976 * 119.97803 * 180.02562 * 7 6 4 9 9 C 1.38266 * 120.21919 * 359.74326 * 8 7 6 10 10 C 1.38902 * 120.22680 * 0.51175 * 9 8 7 11 11 N 1.40257 * 119.98951 * 179.76308 * 10 9 8 12 12 C 1.37100 * 126.47784 * 359.72839 * 11 10 9 13 13 C 1.34655 * 106.83239 * 180.27990 * 12 11 10 14 14 N 1.34124 * 108.19560 * 359.57533 * 13 12 11 15 15 C 1.30520 * 109.35212 * 0.43660 * 14 13 12 16 16 C 1.38576 * 120.01067 * 359.49219 * 10 9 8 17 17 C 1.55161 * 111.00318 * 123.87965 * 2 1 3 18 18 C 1.54323 * 102.94428 * 153.61432 * 17 2 1 19 19 N 1.47020 * 107.27191 * 337.80669 * 18 17 2 20 20 C 1.36937 * 125.64922 * 178.98782 * 19 18 17 21 21 H 1.08002 * 119.99907 * 174.79044 * 20 19 18 22 22 C 1.38805 * 119.99782 * 354.78694 * 20 19 18 23 23 N 1.31620 * 120.00475 * 7.05559 * 22 20 19 24 24 Si 1.86809 * 119.99854 * 187.05493 * 22 20 19 25 25 H 1.48497 * 109.47155 * 94.98772 * 24 22 20 26 26 H 1.48494 * 109.46862 * 214.98830 * 24 22 20 27 27 H 1.48500 * 109.46984 * 334.98763 * 24 22 20 28 28 C 1.47428 * 108.70201 * 358.94008 * 19 18 17 29 29 H 1.09002 * 109.46776 * 59.30260 * 1 2 3 30 30 H 1.08999 * 109.47471 * 179.29321 * 1 2 3 31 31 H 1.08995 * 109.47172 * 299.30663 * 1 2 3 32 32 H 0.97007 * 120.00032 * 123.87684 * 3 2 1 33 33 H 1.07996 * 120.00987 * 0.04208 * 7 6 4 34 34 H 1.08003 * 119.88725 * 179.97438 * 8 7 6 35 35 H 1.08002 * 119.88440 * 180.28106 * 9 8 7 36 36 H 1.07998 * 126.58105 * 0.02562 * 12 11 10 37 37 H 1.07997 * 125.89687 * 179.70353 * 13 12 11 38 38 H 1.07992 * 125.71553 * 179.73537 * 15 14 13 39 39 H 1.08002 * 120.10627 * 180.27835 * 16 10 9 40 40 H 1.08997 * 110.72032 * 271.98370 * 17 2 1 41 41 H 1.09011 * 110.71857 * 35.07011 * 17 2 1 42 42 H 1.08992 * 109.88362 * 97.22438 * 18 17 2 43 43 H 1.09000 * 109.88146 * 218.39124 * 18 17 2 44 44 H 0.96990 * 120.00316 * 179.97438 * 23 22 20 45 45 H 1.08996 * 110.36878 * 265.29007 * 28 19 18 46 46 H 1.09004 * 110.36621 * 142.96062 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0523 1.3687 0.0000 4 6 1.6847 2.2303 -0.9690 5 8 0.9201 1.8715 -1.8432 6 6 2.2124 3.6115 -0.9693 7 6 3.0911 4.0258 0.0334 8 6 3.5814 5.3156 0.0307 9 6 3.2096 6.1993 -0.9655 10 6 2.3318 5.7981 -1.9644 11 7 1.9541 6.7002 -2.9697 12 6 2.3637 8.0029 -3.0918 13 6 1.7590 8.5008 -4.1871 14 7 1.0074 7.5305 -4.7281 15 6 1.1131 6.4483 -4.0062 16 6 1.8335 4.5050 -1.9709 17 6 2.0861 -0.8075 1.2026 18 6 3.4678 -1.2731 0.6970 19 7 3.4281 -1.2423 -0.7723 20 6 4.4654 -1.5658 -1.6057 21 1 4.3114 -1.5923 -2.6744 22 6 5.7147 -1.8594 -1.0770 23 7 5.8702 -1.9634 0.2258 24 14 7.1757 -2.1069 -2.2146 25 1 7.9231 -0.8304 -2.3454 26 1 8.0707 -3.1492 -1.6511 27 1 6.6944 -2.5380 -3.5517 28 6 2.0861 -0.8066 -1.1999 29 1 -0.3633 0.5246 -0.8837 30 1 -0.3634 -1.0276 -0.0127 31 1 -0.3633 0.5030 0.8961 32 1 2.6627 1.6549 0.6975 33 1 3.3872 3.3370 0.8107 34 1 4.2608 5.6346 0.8073 35 1 3.6003 7.2062 -0.9649 36 1 3.0382 8.5299 -2.4333 37 1 1.8630 9.5068 -4.5657 38 1 0.6153 5.5098 -4.2004 39 1 1.1544 4.1901 -2.7493 40 1 2.1914 -0.1694 2.0799 41 1 1.4453 -1.6613 1.4232 42 1 4.2424 -0.5983 1.0611 43 1 3.6657 -2.2882 1.0413 44 1 6.7431 -2.1690 0.5952 45 1 1.4532 -1.6707 -1.4021 46 1 2.1569 -0.1720 -2.0833 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046747291.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:10:51 Heat of formation + Delta-G solvation = 94.115669 kcal Electronic energy + Delta-G solvation = -29201.763149 eV Core-core repulsion = 25286.650628 eV Total energy + Delta-G solvation = -3915.112521 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.56421 -40.38550 -38.94415 -37.23686 -34.52197 -33.97023 -32.21502 -31.52888 -30.34058 -29.64286 -29.28188 -28.71078 -25.73251 -24.63461 -23.87270 -23.54652 -21.92042 -21.02823 -20.51957 -20.16248 -19.23991 -18.88695 -17.14330 -16.61850 -16.42219 -15.86654 -15.75966 -15.26363 -14.79759 -14.67718 -14.66883 -14.38971 -14.00587 -13.94140 -13.78271 -13.60645 -13.31855 -13.02563 -12.85051 -12.28589 -12.07651 -11.95666 -11.88194 -11.73325 -11.69159 -10.95500 -10.93706 -10.89647 -10.47756 -10.41962 -10.34711 -10.12294 -10.07284 -9.72232 -9.46329 -9.38275 -9.02018 -8.74861 -8.60561 -8.55538 -6.84351 -5.76077 -3.06878 0.40003 0.71016 1.93248 2.33530 2.81888 2.91992 3.27861 3.37780 3.44046 3.45500 3.67616 4.28879 4.33869 4.41246 4.47765 4.51750 4.73069 4.76565 4.86301 5.01083 5.09975 5.26835 5.30462 5.32269 5.43039 5.46568 5.55838 5.57197 5.66690 5.89173 5.95579 5.97932 6.06727 6.09296 6.11841 6.24479 6.30577 6.34377 6.44376 6.47500 6.62442 6.74702 6.94270 7.02794 7.48413 7.51898 7.72386 7.74124 7.78049 8.21754 8.39482 9.19365 9.79431 10.45402 11.36311 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012027 B = 0.003008 C = 0.002731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2327.631943 B = 9307.329281 C =10251.763941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.157 3.843 3 N -0.691 5.691 4 C 0.559 3.441 5 O -0.533 6.533 6 C -0.095 4.095 7 C -0.089 4.089 8 C -0.097 4.097 9 C -0.113 4.113 10 C 0.122 3.878 11 N -0.409 5.409 12 C -0.056 4.056 13 C -0.024 4.024 14 N -0.487 5.487 15 C 0.193 3.807 16 C -0.076 4.076 17 C -0.147 4.147 18 C 0.176 3.824 19 N -0.603 5.603 20 C -0.223 4.223 21 H 0.077 0.923 22 C -0.007 4.007 23 N -0.922 5.922 24 Si 0.908 3.092 25 H -0.290 1.290 26 H -0.291 1.291 27 H -0.281 1.281 28 C 0.133 3.867 29 H 0.078 0.922 30 H 0.063 0.937 31 H 0.049 0.951 32 H 0.398 0.602 33 H 0.137 0.863 34 H 0.140 0.860 35 H 0.134 0.866 36 H 0.178 0.822 37 H 0.174 0.826 38 H 0.211 0.789 39 H 0.145 0.855 40 H 0.064 0.936 41 H 0.074 0.926 42 H 0.047 0.953 43 H 0.043 0.957 44 H 0.251 0.749 45 H 0.027 0.973 46 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.616 17.516 3.430 19.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.070 3.930 3 N -0.341 5.341 4 C 0.345 3.655 5 O -0.411 6.411 6 C -0.099 4.099 7 C -0.108 4.108 8 C -0.116 4.116 9 C -0.133 4.133 10 C 0.029 3.971 11 N -0.088 5.088 12 C -0.186 4.186 13 C -0.170 4.170 14 N -0.204 5.204 15 C -0.088 4.088 16 C -0.096 4.096 17 C -0.186 4.186 18 C 0.051 3.949 19 N -0.329 5.329 20 C -0.351 4.351 21 H 0.094 0.906 22 C -0.203 4.203 23 N -0.570 5.570 24 Si 0.739 3.261 25 H -0.217 1.217 26 H -0.218 1.218 27 H -0.206 1.206 28 C 0.006 3.994 29 H 0.097 0.903 30 H 0.082 0.918 31 H 0.068 0.932 32 H 0.234 0.766 33 H 0.154 0.846 34 H 0.158 0.842 35 H 0.151 0.849 36 H 0.195 0.805 37 H 0.191 0.809 38 H 0.227 0.773 39 H 0.163 0.837 40 H 0.083 0.917 41 H 0.093 0.907 42 H 0.065 0.935 43 H 0.061 0.939 44 H 0.062 0.938 45 H 0.045 0.955 46 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -8.389 17.197 2.161 19.256 hybrid contribution 1.858 -0.091 0.571 1.946 sum -6.531 17.107 2.731 18.514 Atomic orbital electron populations 1.22039 0.94020 1.02350 1.02714 1.21536 0.92815 0.80308 0.98325 1.45728 1.48090 1.11864 1.28421 1.17968 0.81216 0.84338 0.81948 1.90723 1.35821 1.78084 1.36516 1.19921 0.99252 0.94495 0.96212 1.21502 0.95156 0.96426 0.97714 1.20988 0.99497 0.92893 0.98214 1.21006 0.97425 1.00901 0.93954 1.17668 0.99398 0.89598 0.90406 1.43233 1.34991 1.09988 1.20556 1.22755 1.07207 0.84792 1.03874 1.22370 0.99434 0.99791 0.95409 1.70356 1.22288 0.99641 1.28095 1.25403 0.96495 1.00597 0.86286 1.20861 0.99558 0.90182 0.99042 1.23242 1.00513 0.98988 0.95815 1.21171 0.89976 0.99968 0.83782 1.44445 1.07988 1.78722 1.01761 1.19061 0.87408 1.39434 0.89210 0.90559 1.24768 0.97458 1.02119 0.95995 1.69952 1.22461 1.55156 1.09467 0.86149 0.82840 0.77363 0.79796 1.21724 1.21775 1.20623 1.21882 0.87667 0.94910 0.94957 0.90314 0.91780 0.93154 0.76627 0.84575 0.84205 0.84858 0.80530 0.80873 0.77262 0.83689 0.91743 0.90707 0.93496 0.93920 0.93849 0.95533 0.93126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.24 8.52 37.16 0.32 -1.92 16 2 C 0.16 2.63 0.82 -129.67 -0.11 2.53 16 3 N -0.69 -10.59 5.13 -46.55 -0.24 -10.83 16 4 C 0.56 8.77 7.15 -12.33 -0.09 8.68 16 5 O -0.53 -9.71 13.20 5.32 0.07 -9.64 16 6 C -0.10 -1.22 5.87 -104.99 -0.62 -1.83 16 7 C -0.09 -0.92 9.54 -39.16 -0.37 -1.29 16 8 C -0.10 -0.82 10.02 -39.67 -0.40 -1.22 16 9 C -0.11 -0.98 9.47 -39.33 -0.37 -1.36 16 10 C 0.12 1.30 6.63 -83.63 -0.55 0.75 16 11 N -0.41 -4.41 2.99 -62.14 -0.19 -4.59 16 12 C -0.06 -0.52 10.85 -16.46 -0.18 -0.70 16 13 C -0.02 -0.25 11.85 -17.82 -0.21 -0.46 16 14 N -0.49 -6.20 11.24 -14.48 -0.16 -6.36 16 15 C 0.19 2.22 11.91 -89.63 -1.07 1.15 16 16 C -0.08 -0.91 9.01 -39.00 -0.35 -1.27 16 17 C -0.15 -2.46 5.97 -24.89 -0.15 -2.61 16 18 C 0.18 3.98 5.37 -3.07 -0.02 3.96 16 19 N -0.60 -14.98 3.39 -170.08 -0.58 -15.56 16 20 C -0.22 -6.18 10.26 -15.06 -0.15 -6.33 16 21 H 0.08 2.10 7.84 -52.49 -0.41 1.69 16 22 C -0.01 -0.21 5.48 -17.43 -0.10 -0.30 16 23 N -0.92 -26.26 10.36 55.49 0.57 -25.69 16 24 Si 0.91 22.04 29.56 -169.99 -5.02 17.01 16 25 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 26 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 27 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 28 C 0.13 2.82 6.17 -2.53 -0.02 2.80 16 29 H 0.08 1.26 6.00 -51.93 -0.31 0.95 16 30 H 0.06 0.88 8.13 -51.93 -0.42 0.45 16 31 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.40 5.34 6.54 -40.82 -0.27 5.07 16 33 H 0.14 1.22 6.40 -52.49 -0.34 0.89 16 34 H 0.14 0.80 8.06 -52.48 -0.42 0.37 16 35 H 0.13 0.83 6.80 -52.49 -0.36 0.47 16 36 H 0.18 1.03 7.14 -52.49 -0.37 0.65 16 37 H 0.17 1.29 8.06 -52.49 -0.42 0.86 16 38 H 0.21 1.93 7.06 -52.49 -0.37 1.56 16 39 H 0.15 1.73 6.36 -52.49 -0.33 1.39 16 40 H 0.06 0.92 8.09 -51.93 -0.42 0.50 16 41 H 0.07 1.18 8.04 -51.92 -0.42 0.76 16 42 H 0.05 1.15 7.30 -51.93 -0.38 0.77 16 43 H 0.04 1.09 7.61 -51.93 -0.40 0.69 16 44 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 45 H 0.03 0.57 8.03 -51.93 -0.42 0.15 16 46 H 0.05 1.16 6.86 -51.93 -0.36 0.80 16 LS Contribution 372.87 15.07 5.62 5.62 Total: -1.00 -33.87 372.87 -10.33 -44.20 By element: Atomic # 1 Polarization: 11.22 SS G_CDS: -5.97 Total: 5.25 kcal Atomic # 6 Polarization: 5.01 SS G_CDS: -4.43 Total: 0.58 kcal Atomic # 7 Polarization: -62.44 SS G_CDS: -0.59 Total: -63.03 kcal Atomic # 8 Polarization: -9.71 SS G_CDS: 0.07 Total: -9.64 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -33.87 -10.33 -44.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046747291.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.320 kcal (2) G-P(sol) polarization free energy of solvation -33.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.205 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds