Wall clock time and date at job start Tue Mar 31 2020 23:10:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46496 * 110.88883 * 2 1 4 4 C 1.34775 * 120.00390 * 303.87943 * 3 2 1 5 5 O 1.21557 * 119.99333 * 359.97438 * 4 3 2 6 6 C 1.47856 * 120.00387 * 180.02562 * 4 3 2 7 7 C 1.39614 * 120.11075 * 359.97438 * 6 4 3 8 8 C 1.37976 * 119.97803 * 180.02562 * 7 6 4 9 9 C 1.38266 * 120.21919 * 359.74326 * 8 7 6 10 10 C 1.38902 * 120.22680 * 0.51175 * 9 8 7 11 11 N 1.40257 * 119.98951 * 179.76308 * 10 9 8 12 12 C 1.37100 * 126.47784 * 359.72839 * 11 10 9 13 13 C 1.34655 * 106.83239 * 180.27990 * 12 11 10 14 14 N 1.34124 * 108.19560 * 359.57533 * 13 12 11 15 15 C 1.30520 * 109.35212 * 0.43660 * 14 13 12 16 16 C 1.38576 * 120.01067 * 359.49219 * 10 9 8 17 17 C 1.55161 * 111.00318 * 123.87965 * 2 1 3 18 18 C 1.54323 * 102.94428 * 153.61432 * 17 2 1 19 19 N 1.47020 * 107.27191 * 337.80669 * 18 17 2 20 20 C 1.36937 * 125.64922 * 178.98782 * 19 18 17 21 21 H 1.08002 * 119.99907 * 174.79044 * 20 19 18 22 22 C 1.38805 * 119.99782 * 354.78694 * 20 19 18 23 23 N 1.31620 * 120.00475 * 7.05559 * 22 20 19 24 24 Si 1.86809 * 119.99854 * 187.05493 * 22 20 19 25 25 H 1.48497 * 109.47155 * 94.98772 * 24 22 20 26 26 H 1.48494 * 109.46862 * 214.98830 * 24 22 20 27 27 H 1.48500 * 109.46984 * 334.98763 * 24 22 20 28 28 C 1.47428 * 108.70201 * 358.94008 * 19 18 17 29 29 H 1.09002 * 109.46776 * 59.30260 * 1 2 3 30 30 H 1.08999 * 109.47471 * 179.29321 * 1 2 3 31 31 H 1.08995 * 109.47172 * 299.30663 * 1 2 3 32 32 H 0.97007 * 120.00032 * 123.87684 * 3 2 1 33 33 H 1.07996 * 120.00987 * 0.04208 * 7 6 4 34 34 H 1.08003 * 119.88725 * 179.97438 * 8 7 6 35 35 H 1.08002 * 119.88440 * 180.28106 * 9 8 7 36 36 H 1.07998 * 126.58105 * 0.02562 * 12 11 10 37 37 H 1.07997 * 125.89687 * 179.70353 * 13 12 11 38 38 H 1.07992 * 125.71553 * 179.73537 * 15 14 13 39 39 H 1.08002 * 120.10627 * 180.27835 * 16 10 9 40 40 H 1.08997 * 110.72032 * 271.98370 * 17 2 1 41 41 H 1.09011 * 110.71857 * 35.07011 * 17 2 1 42 42 H 1.08992 * 109.88362 * 97.22438 * 18 17 2 43 43 H 1.09000 * 109.88146 * 218.39124 * 18 17 2 44 44 H 0.96990 * 120.00316 * 179.97438 * 23 22 20 45 45 H 1.08996 * 110.36878 * 265.29007 * 28 19 18 46 46 H 1.09004 * 110.36621 * 142.96062 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0523 1.3687 0.0000 4 6 1.6847 2.2303 -0.9690 5 8 0.9201 1.8715 -1.8432 6 6 2.2124 3.6115 -0.9693 7 6 3.0911 4.0258 0.0334 8 6 3.5814 5.3156 0.0307 9 6 3.2096 6.1993 -0.9655 10 6 2.3318 5.7981 -1.9644 11 7 1.9541 6.7002 -2.9697 12 6 2.3637 8.0029 -3.0918 13 6 1.7590 8.5008 -4.1871 14 7 1.0074 7.5305 -4.7281 15 6 1.1131 6.4483 -4.0062 16 6 1.8335 4.5050 -1.9709 17 6 2.0861 -0.8075 1.2026 18 6 3.4678 -1.2731 0.6970 19 7 3.4281 -1.2423 -0.7723 20 6 4.4654 -1.5658 -1.6057 21 1 4.3114 -1.5923 -2.6744 22 6 5.7147 -1.8594 -1.0770 23 7 5.8702 -1.9634 0.2258 24 14 7.1757 -2.1069 -2.2146 25 1 7.9231 -0.8304 -2.3454 26 1 8.0707 -3.1492 -1.6511 27 1 6.6944 -2.5380 -3.5517 28 6 2.0861 -0.8066 -1.1999 29 1 -0.3633 0.5246 -0.8837 30 1 -0.3634 -1.0276 -0.0127 31 1 -0.3633 0.5030 0.8961 32 1 2.6627 1.6549 0.6975 33 1 3.3872 3.3370 0.8107 34 1 4.2608 5.6346 0.8073 35 1 3.6003 7.2062 -0.9649 36 1 3.0382 8.5299 -2.4333 37 1 1.8630 9.5068 -4.5657 38 1 0.6153 5.5098 -4.2004 39 1 1.1544 4.1901 -2.7493 40 1 2.1914 -0.1694 2.0799 41 1 1.4453 -1.6613 1.4232 42 1 4.2424 -0.5983 1.0611 43 1 3.6657 -2.2882 1.0413 44 1 6.7431 -2.1690 0.5952 45 1 1.4532 -1.6707 -1.4021 46 1 2.1569 -0.1720 -2.0833 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046747291.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:10:50 Heat of formation + Delta-G solvation = 74.370410 kcal Electronic energy + Delta-G solvation = -29202.619368 eV Core-core repulsion = 25286.650628 eV Total energy + Delta-G solvation = -3915.968739 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.34368 -41.54398 -39.98723 -38.66056 -35.75182 -35.25969 -33.71294 -32.57131 -31.72314 -30.69225 -30.27009 -30.04832 -27.53128 -25.78439 -25.11110 -24.61557 -22.88629 -22.13845 -21.84953 -21.24890 -20.50200 -19.90975 -18.88418 -17.75335 -17.32891 -17.09800 -16.71393 -16.57270 -16.25746 -16.05068 -15.63784 -15.55605 -15.35967 -14.92994 -14.83636 -14.65458 -14.33275 -14.23584 -13.90865 -13.84103 -13.56666 -13.40114 -13.15405 -12.89354 -12.83715 -12.76503 -12.52215 -12.11458 -12.04165 -11.99120 -11.77287 -11.72070 -11.59868 -11.17043 -10.75008 -10.69846 -10.24327 -10.00443 -9.78015 -9.37713 -8.86805 -7.88113 -5.20265 -0.41095 -0.10980 1.16443 1.43209 1.43571 1.52826 1.56120 1.84956 2.07000 2.15053 2.46881 2.74935 3.29874 3.42103 3.58368 3.61177 3.70008 3.71892 3.75485 3.97046 4.02621 4.03539 4.07215 4.18706 4.38361 4.51580 4.59997 4.64041 4.68799 4.73734 4.76506 4.83675 4.86153 4.92106 5.01660 5.07666 5.13083 5.21321 5.32845 5.37616 5.42950 5.52934 5.62680 5.68000 5.72393 5.77214 6.15790 6.19360 6.57010 6.94028 7.11097 7.20834 7.76248 8.40764 9.22021 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012027 B = 0.003008 C = 0.002731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2327.631943 B = 9307.329281 C =10251.763941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.168 3.832 3 N -0.690 5.690 4 C 0.555 3.445 5 O -0.568 6.568 6 C -0.119 4.119 7 C -0.089 4.089 8 C -0.088 4.088 9 C -0.100 4.100 10 C 0.112 3.888 11 N -0.412 5.412 12 C -0.046 4.046 13 C -0.045 4.045 14 N -0.519 5.519 15 C 0.172 3.828 16 C -0.089 4.089 17 C -0.128 4.128 18 C 0.183 3.817 19 N -0.620 5.620 20 C -0.243 4.243 21 H 0.066 0.934 22 C -0.054 4.054 23 N -0.941 5.941 24 Si 0.968 3.032 25 H -0.286 1.286 26 H -0.290 1.290 27 H -0.277 1.277 28 C 0.129 3.871 29 H 0.061 0.939 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.408 0.592 33 H 0.149 0.851 34 H 0.178 0.822 35 H 0.168 0.832 36 H 0.216 0.784 37 H 0.197 0.803 38 H 0.216 0.784 39 H 0.132 0.868 40 H 0.100 0.900 41 H 0.092 0.908 42 H 0.023 0.977 43 H 0.007 0.993 44 H 0.249 0.751 45 H 0.025 0.975 46 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.856 19.781 5.287 21.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.081 3.919 3 N -0.340 5.340 4 C 0.343 3.657 5 O -0.449 6.449 6 C -0.122 4.122 7 C -0.108 4.108 8 C -0.106 4.106 9 C -0.119 4.119 10 C 0.020 3.980 11 N -0.091 5.091 12 C -0.176 4.176 13 C -0.190 4.190 14 N -0.237 5.237 15 C -0.109 4.109 16 C -0.110 4.110 17 C -0.167 4.167 18 C 0.058 3.942 19 N -0.346 5.346 20 C -0.372 4.372 21 H 0.084 0.916 22 C -0.248 4.248 23 N -0.590 5.590 24 Si 0.797 3.203 25 H -0.213 1.213 26 H -0.217 1.217 27 H -0.202 1.202 28 C 0.003 3.997 29 H 0.080 0.920 30 H 0.093 0.907 31 H 0.095 0.905 32 H 0.246 0.754 33 H 0.166 0.834 34 H 0.195 0.805 35 H 0.185 0.815 36 H 0.233 0.767 37 H 0.213 0.787 38 H 0.232 0.768 39 H 0.150 0.850 40 H 0.118 0.882 41 H 0.110 0.890 42 H 0.042 0.958 43 H 0.025 0.975 44 H 0.058 0.942 45 H 0.043 0.957 46 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -7.643 19.477 4.031 21.308 hybrid contribution 1.639 -0.756 -0.051 1.806 sum -6.004 18.721 3.979 20.059 Atomic orbital electron populations 1.21961 0.91852 1.03188 1.03193 1.21370 0.94192 0.80593 0.95770 1.45680 1.48329 1.11161 1.28837 1.18465 0.80551 0.85491 0.81194 1.90700 1.37421 1.79020 1.37719 1.19735 1.01362 0.93038 0.98100 1.21732 0.94264 0.97775 0.97059 1.21408 0.98972 0.91638 0.98625 1.21453 0.95593 1.02419 0.92481 1.17787 1.00075 0.89044 0.91116 1.43333 1.34818 1.10623 1.20301 1.23389 1.06581 0.83931 1.03705 1.22884 0.99568 1.00501 0.96097 1.70321 1.23524 1.00664 1.29206 1.25583 0.97446 1.00868 0.87003 1.20825 1.00036 0.91193 0.98933 1.23116 0.96840 1.00088 0.96627 1.20980 0.93021 0.97544 0.82612 1.44675 1.08616 1.78660 1.02672 1.19282 0.88827 1.39674 0.89419 0.91587 1.25463 0.99558 1.02294 0.97435 1.70131 1.22595 1.55653 1.10597 0.85213 0.79682 0.77165 0.78214 1.21302 1.21653 1.20205 1.21986 0.86442 0.95067 0.96212 0.91994 0.90720 0.90530 0.75448 0.83360 0.80510 0.81458 0.76695 0.78660 0.76789 0.85010 0.88160 0.88980 0.95830 0.97479 0.94207 0.95715 0.95656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.99 8.52 71.98 0.61 -3.37 16 2 C 0.17 5.51 0.82 5.00 0.00 5.52 16 3 N -0.69 -20.69 5.13 -419.46 -2.15 -22.84 16 4 C 0.55 17.65 7.15 86.79 0.62 18.27 16 5 O -0.57 -21.60 13.20 -3.90 -0.05 -21.65 16 6 C -0.12 -3.00 5.87 -20.10 -0.12 -3.12 16 7 C -0.09 -1.65 9.54 22.54 0.21 -1.43 16 8 C -0.09 -1.14 10.02 22.21 0.22 -0.91 16 9 C -0.10 -1.36 9.47 22.44 0.21 -1.15 16 10 C 0.11 2.22 6.63 38.03 0.25 2.47 16 11 N -0.41 -8.38 2.99 -350.51 -1.05 -9.43 16 12 C -0.05 -0.74 10.85 83.05 0.90 0.16 16 13 C -0.05 -0.87 11.85 83.52 0.99 0.12 16 14 N -0.52 -13.31 11.24 -199.72 -2.25 -15.55 16 15 C 0.17 4.04 11.91 180.00 2.14 6.18 16 16 C -0.09 -2.17 9.01 22.65 0.20 -1.97 16 17 C -0.13 -4.08 5.97 31.78 0.19 -3.89 16 18 C 0.18 8.38 5.37 86.73 0.47 8.85 16 19 N -0.62 -31.62 3.39 -692.00 -2.35 -33.97 16 20 C -0.24 -13.86 10.26 84.03 0.86 -13.00 16 21 H 0.07 3.79 7.84 -2.91 -0.02 3.76 16 22 C -0.05 -3.03 5.48 84.86 0.46 -2.56 16 23 N -0.94 -54.50 10.36 21.65 0.22 -54.28 16 24 Si 0.97 45.85 29.56 68.60 2.03 47.88 16 25 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 26 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 27 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 28 C 0.13 5.62 6.17 86.85 0.54 6.16 16 29 H 0.06 1.97 6.00 -2.39 -0.01 1.96 16 30 H 0.07 1.90 8.13 -2.39 -0.02 1.88 16 31 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.41 10.36 6.54 -92.70 -0.61 9.75 16 33 H 0.15 2.29 6.40 -2.91 -0.02 2.27 16 34 H 0.18 1.01 8.06 -2.91 -0.02 0.99 16 35 H 0.17 1.12 6.80 -2.91 -0.02 1.10 16 36 H 0.22 1.48 7.14 -2.91 -0.02 1.46 16 37 H 0.20 2.56 8.06 -2.91 -0.02 2.53 16 38 H 0.22 4.38 7.06 -2.91 -0.02 4.36 16 39 H 0.13 3.42 6.36 -2.91 -0.02 3.40 16 40 H 0.10 2.51 8.09 -2.39 -0.02 2.49 16 41 H 0.09 2.66 8.04 -2.38 -0.02 2.64 16 42 H 0.02 1.17 7.30 -2.39 -0.02 1.16 16 43 H 0.01 0.37 7.61 -2.39 -0.02 0.35 16 44 H 0.25 13.97 8.31 -92.72 -0.77 13.20 16 45 H 0.03 1.09 8.03 -2.39 -0.02 1.07 16 46 H 0.03 1.21 6.86 -2.39 -0.02 1.20 16 Total: -1.00 -77.41 372.87 3.60 -73.81 By element: Atomic # 1 Polarization: 19.30 SS G_CDS: 0.41 Total: 19.71 kcal Atomic # 6 Polarization: 7.54 SS G_CDS: 8.78 Total: 16.33 kcal Atomic # 7 Polarization: -128.51 SS G_CDS: -7.57 Total: -136.08 kcal Atomic # 8 Polarization: -21.60 SS G_CDS: -0.05 Total: -21.65 kcal Atomic # 14 Polarization: 45.85 SS G_CDS: 2.03 Total: 47.88 kcal Total: -77.41 3.60 -73.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046747291.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.183 kcal (2) G-P(sol) polarization free energy of solvation -77.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.812 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds