Wall clock time and date at job start Tue Mar 31 2020 23:10:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46502 * 110.91392 * 2 1 4 4 C 1.34778 * 119.99873 * 62.45132 * 3 2 1 5 5 O 1.21514 * 120.00068 * 359.97438 * 4 3 2 6 6 C 1.48188 * 120.00028 * 180.02562 * 4 3 2 7 7 C 1.39107 * 119.69277 * 179.72609 * 6 4 3 8 8 C 1.39292 * 118.97590 * 179.79669 * 7 6 4 9 9 N 1.39913 * 120.82647 * 180.24605 * 8 7 6 10 10 C 1.36630 * 125.67355 * 359.92046 * 9 8 7 11 11 C 1.34810 * 108.19181 * 179.83244 * 10 9 8 12 12 C 1.40981 * 107.48461 * 0.42531 * 11 10 9 13 13 C 1.34815 * 107.47810 * 359.73321 * 12 11 10 14 14 C 1.39283 * 118.35207 * 0.46359 * 8 7 6 15 15 C 1.38337 * 119.27733 * 359.75649 * 14 8 7 16 16 N 1.31597 * 120.97693 * 0.02562 * 15 14 8 17 17 C 1.55448 * 111.11787 * 236.00911 * 2 1 3 18 18 C 1.54321 * 102.96961 * 206.45980 * 17 2 1 19 19 N 1.47026 * 107.26791 * 22.19024 * 18 17 2 20 20 C 1.36940 * 125.64258 * 181.03445 * 19 18 17 21 21 H 1.08003 * 119.99660 * 180.02562 * 20 19 18 22 22 C 1.38811 * 120.00559 * 0.02875 * 20 19 18 23 23 N 1.31617 * 119.99776 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 120.00230 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.46543 * 89.99925 * 24 22 20 26 26 H 1.48496 * 109.46962 * 209.99740 * 24 22 20 27 27 H 1.48497 * 109.47197 * 330.00191 * 24 22 20 28 28 C 1.47419 * 108.70576 * 1.06162 * 19 18 17 29 29 H 1.09000 * 109.47194 * 297.54709 * 1 2 3 30 30 H 1.09001 * 109.47578 * 57.55154 * 1 2 3 31 31 H 1.09003 * 109.46933 * 177.54882 * 1 2 3 32 32 H 0.97001 * 120.00055 * 242.45381 * 3 2 1 33 33 H 1.08002 * 120.51426 * 0.02562 * 7 6 4 34 34 H 1.07994 * 125.89942 * 359.96078 * 10 9 8 35 35 H 1.07998 * 126.26117 * 180.13672 * 11 10 9 36 36 H 1.07995 * 126.26072 * 179.71421 * 12 11 10 37 37 H 1.07997 * 125.90256 * 180.02562 * 13 12 11 38 38 H 1.07998 * 120.36273 * 179.73030 * 14 8 7 39 39 H 1.07998 * 119.50592 * 179.97438 * 15 14 8 40 40 H 1.08998 * 110.70855 * 88.08785 * 17 2 1 41 41 H 1.08998 * 110.85957 * 324.90400 * 17 2 1 42 42 H 1.08998 * 109.88101 * 262.77542 * 18 17 2 43 43 H 1.08997 * 110.01327 * 141.67909 * 18 17 2 44 44 H 0.97004 * 120.00521 * 179.97438 * 23 22 20 45 45 H 1.09002 * 110.36926 * 94.70918 * 28 19 18 46 46 H 1.08995 * 110.36556 * 216.92202 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0530 1.3685 0.0000 4 6 1.7892 2.1907 1.0349 5 8 1.1173 1.7970 1.9677 6 6 2.3177 3.5751 1.0347 7 6 2.0368 4.4201 2.1034 8 6 2.5447 5.7170 2.0898 9 7 2.2905 6.5977 3.1468 10 6 1.5528 6.3132 4.2611 11 6 1.5386 7.4081 5.0474 12 6 2.2854 8.4091 4.3932 13 6 2.7336 7.8872 3.2338 14 6 3.3081 6.1170 0.9956 15 6 3.5401 5.2199 -0.0316 16 7 3.0504 3.9992 0.0117 17 6 2.0901 -0.8107 -1.2023 18 6 3.4707 -1.2757 -0.6934 19 7 3.4280 -1.2429 0.7759 20 6 4.4639 -1.5649 1.6117 21 1 4.3314 -1.5089 2.6821 22 6 5.6841 -1.9633 1.0833 23 7 5.8454 -2.0320 -0.2211 24 14 7.0973 -2.4018 2.2235 25 1 7.0439 -3.8511 2.5429 26 1 8.3867 -2.0890 1.5567 27 1 6.9844 -1.6141 3.4773 28 6 2.0853 -0.8066 1.2002 29 1 -0.3633 0.4753 0.9111 30 1 -0.3634 0.5514 -0.8672 31 1 -0.3633 -1.0268 -0.0440 32 1 2.5890 1.6829 -0.7448 33 1 1.4373 4.0747 2.9327 34 1 1.0670 5.3728 4.4758 35 1 1.0416 7.5029 6.0015 36 1 2.4652 9.4107 4.7546 37 1 3.3388 8.3997 2.5007 38 1 3.7142 7.1167 0.9494 39 1 4.1312 5.5263 -0.8820 40 1 2.1972 -0.1737 -2.0803 41 1 1.4525 -1.6665 -1.4240 42 1 4.2461 -0.6014 -1.0569 43 1 3.6720 -2.2907 -1.0358 44 1 6.6982 -2.3100 -0.5905 45 1 1.4520 -1.6704 1.4024 46 1 2.1542 -0.1725 2.0841 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046759950.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:10:54 Heat of formation + Delta-G solvation = 93.737279 kcal Electronic energy + Delta-G solvation = -29227.834265 eV Core-core repulsion = 25312.705336 eV Total energy + Delta-G solvation = -3915.128929 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.03103 -40.48185 -39.27138 -37.19943 -34.46696 -33.88468 -32.19160 -31.52353 -30.09989 -29.81826 -29.19720 -28.64633 -25.68234 -25.00056 -24.02966 -23.55303 -21.81943 -20.56881 -20.39587 -20.04224 -19.15159 -18.80352 -17.24737 -16.76297 -16.18015 -16.11895 -15.54673 -15.35805 -14.88383 -14.82290 -14.60486 -14.35789 -13.97642 -13.84186 -13.78959 -13.47386 -13.18403 -12.79285 -12.64971 -12.41735 -12.18498 -12.05769 -11.90546 -11.78512 -11.65277 -10.88655 -10.86887 -10.80093 -10.49744 -10.34850 -10.11990 -10.04901 -9.97489 -9.63260 -9.53311 -9.41425 -8.67219 -8.63523 -8.59081 -8.51847 -6.76561 -5.67474 -2.99150 0.32574 0.60863 2.10036 2.36269 2.68646 2.86728 3.27557 3.42399 3.47530 3.49400 3.77438 4.02239 4.27306 4.33244 4.53605 4.64573 4.66607 4.87432 5.01220 5.06903 5.14271 5.23103 5.37839 5.38741 5.43296 5.49480 5.52408 5.62965 5.75235 5.90750 5.94606 6.00742 6.12184 6.15829 6.17342 6.34983 6.41633 6.54704 6.56397 6.67699 6.81180 6.82397 7.01391 7.10340 7.47593 7.58518 7.61036 7.83794 7.91525 8.29782 8.46570 9.26927 9.87018 10.53033 11.44553 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011799 B = 0.003058 C = 0.002766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2372.596883 B = 9152.658763 C =10119.811909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.153 3.847 3 N -0.674 5.674 4 C 0.572 3.428 5 O -0.531 6.531 6 C 0.123 3.877 7 C -0.139 4.139 8 C 0.180 3.820 9 N -0.400 5.400 10 C -0.009 4.009 11 C -0.188 4.188 12 C -0.186 4.186 13 C -0.016 4.016 14 C -0.183 4.183 15 C 0.131 3.869 16 N -0.465 5.465 17 C -0.146 4.146 18 C 0.177 3.823 19 N -0.603 5.603 20 C -0.221 4.221 21 H 0.076 0.924 22 C -0.010 4.010 23 N -0.923 5.923 24 Si 0.910 3.090 25 H -0.289 1.289 26 H -0.291 1.291 27 H -0.282 1.282 28 C 0.131 3.869 29 H 0.070 0.930 30 H 0.051 0.949 31 H 0.065 0.935 32 H 0.409 0.591 33 H 0.155 0.845 34 H 0.170 0.830 35 H 0.144 0.856 36 H 0.143 0.857 37 H 0.167 0.833 38 H 0.145 0.855 39 H 0.172 0.828 40 H 0.065 0.935 41 H 0.074 0.926 42 H 0.046 0.954 43 H 0.044 0.956 44 H 0.251 0.749 45 H 0.027 0.973 46 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.154 19.643 0.313 21.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.066 3.934 3 N -0.324 5.324 4 C 0.355 3.645 5 O -0.408 6.408 6 C -0.016 4.016 7 C -0.161 4.161 8 C 0.079 3.921 9 N -0.073 5.073 10 C -0.135 4.135 11 C -0.212 4.212 12 C -0.210 4.210 13 C -0.141 4.141 14 C -0.205 4.205 15 C -0.028 4.028 16 N -0.177 5.177 17 C -0.184 4.184 18 C 0.052 3.948 19 N -0.329 5.329 20 C -0.350 4.350 21 H 0.094 0.906 22 C -0.205 4.205 23 N -0.572 5.572 24 Si 0.740 3.260 25 H -0.216 1.216 26 H -0.217 1.217 27 H -0.208 1.208 28 C 0.004 3.996 29 H 0.089 0.911 30 H 0.070 0.930 31 H 0.084 0.916 32 H 0.245 0.755 33 H 0.173 0.827 34 H 0.187 0.813 35 H 0.161 0.839 36 H 0.161 0.839 37 H 0.184 0.816 38 H 0.163 0.837 39 H 0.189 0.811 40 H 0.084 0.916 41 H 0.092 0.908 42 H 0.064 0.936 43 H 0.063 0.937 44 H 0.061 0.939 45 H 0.044 0.956 46 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -9.201 18.467 0.063 20.633 hybrid contribution 1.110 0.594 0.916 1.557 sum -8.092 19.062 0.979 20.731 Atomic orbital electron populations 1.21988 0.94176 1.02179 1.02396 1.21638 0.92622 0.80455 0.98643 1.45640 1.52538 1.12201 1.21983 1.17618 0.80482 0.83411 0.82976 1.90742 1.39568 1.75440 1.35064 1.21221 0.94905 0.95179 0.90304 1.21744 1.01851 0.91435 1.01103 1.18017 0.96303 0.89752 0.88054 1.41593 1.40172 1.10351 1.15144 1.22094 1.01801 1.01666 0.87890 1.21059 1.05428 0.93434 1.01233 1.21050 1.03864 1.00330 0.95747 1.21941 1.06327 0.84212 1.01620 1.22012 1.01472 1.02747 0.94265 1.22719 0.95302 0.87616 0.97196 1.67659 1.08200 1.16740 1.25094 1.23274 1.00487 0.98820 0.95843 1.21161 0.90020 0.99953 0.83653 1.44433 1.07746 1.78854 1.01835 1.19050 0.89409 1.37548 0.88944 0.90647 1.24756 0.97705 1.02065 0.96003 1.69946 1.24032 1.53994 1.09199 0.86143 0.82011 0.78205 0.79597 1.21628 1.21739 1.20818 1.21886 0.87663 0.94915 0.95137 0.91077 0.93020 0.91632 0.75460 0.82748 0.81309 0.83850 0.83930 0.81580 0.83710 0.81097 0.91649 0.90750 0.93579 0.93747 0.93890 0.95553 0.92691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.26 8.60 37.16 0.32 -1.94 16 2 C 0.15 2.75 0.83 -129.51 -0.11 2.64 16 3 N -0.67 -11.71 5.16 -46.30 -0.24 -11.95 16 4 C 0.57 10.03 7.21 -12.17 -0.09 9.94 16 5 O -0.53 -10.27 13.12 5.35 0.07 -10.20 16 6 C 0.12 1.85 6.75 -83.04 -0.56 1.29 16 7 C -0.14 -1.85 9.04 -38.87 -0.35 -2.20 16 8 C 0.18 2.07 6.65 -83.39 -0.55 1.51 16 9 N -0.40 -4.34 2.97 -60.75 -0.18 -4.52 16 10 C -0.01 -0.09 10.77 -16.63 -0.18 -0.27 16 11 C -0.19 -1.80 10.86 -39.76 -0.43 -2.23 16 12 C -0.19 -1.67 10.86 -39.76 -0.43 -2.10 16 13 C -0.02 -0.14 10.77 -16.63 -0.18 -0.32 16 14 C -0.18 -1.72 9.53 -39.16 -0.37 -2.09 16 15 C 0.13 1.33 11.17 -17.62 -0.20 1.14 16 16 N -0.46 -6.36 9.54 -9.87 -0.09 -6.45 16 17 C -0.15 -2.62 6.00 -24.74 -0.15 -2.77 16 18 C 0.18 4.23 5.37 -3.06 -0.02 4.22 16 19 N -0.60 -15.65 3.39 -170.08 -0.58 -16.23 16 20 C -0.22 -6.35 10.28 -15.06 -0.15 -6.50 16 21 H 0.08 2.14 7.83 -52.48 -0.41 1.73 16 22 C -0.01 -0.27 5.49 -17.43 -0.10 -0.37 16 23 N -0.92 -27.24 10.31 55.49 0.57 -26.67 16 24 Si 0.91 22.68 29.55 -169.99 -5.02 17.66 16 25 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 26 H -0.29 -7.28 7.11 56.52 0.40 -6.87 16 27 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 28 C 0.13 2.90 6.10 -2.53 -0.02 2.88 16 29 H 0.07 1.16 6.53 -51.93 -0.34 0.82 16 30 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.06 0.92 8.12 -51.93 -0.42 0.50 16 32 H 0.41 6.76 7.82 -40.82 -0.32 6.44 16 33 H 0.15 2.01 6.42 -52.49 -0.34 1.67 16 34 H 0.17 1.55 7.09 -52.49 -0.37 1.18 16 35 H 0.14 1.09 8.06 -52.49 -0.42 0.67 16 36 H 0.14 0.96 8.06 -52.49 -0.42 0.54 16 37 H 0.17 1.03 7.08 -52.49 -0.37 0.65 16 38 H 0.15 0.90 6.83 -52.49 -0.36 0.54 16 39 H 0.17 1.15 8.06 -52.49 -0.42 0.72 16 40 H 0.06 1.03 8.05 -51.93 -0.42 0.61 16 41 H 0.07 1.23 8.03 -51.93 -0.42 0.81 16 42 H 0.05 1.21 7.38 -51.93 -0.38 0.83 16 43 H 0.04 1.18 7.50 -51.93 -0.39 0.79 16 44 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 45 H 0.03 0.58 8.04 -51.93 -0.42 0.17 16 46 H 0.05 1.31 6.31 -51.93 -0.33 0.98 16 LS Contribution 375.29 15.07 5.66 5.66 Total: -1.00 -33.80 375.29 -9.49 -43.29 By element: Atomic # 1 Polarization: 12.71 SS G_CDS: -6.11 Total: 6.60 kcal Atomic # 6 Polarization: 6.39 SS G_CDS: -3.56 Total: 2.82 kcal Atomic # 7 Polarization: -65.31 SS G_CDS: -0.52 Total: -65.83 kcal Atomic # 8 Polarization: -10.27 SS G_CDS: 0.07 Total: -10.20 kcal Atomic # 14 Polarization: 22.68 SS G_CDS: -5.02 Total: 17.66 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -33.80 -9.49 -43.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046759950.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.031 kcal (2) G-P(sol) polarization free energy of solvation -33.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.293 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds