Wall clock time and date at job start Tue Mar 31 2020 23:10:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46502 * 110.91392 * 2 1 4 4 C 1.34778 * 119.99873 * 62.45132 * 3 2 1 5 5 O 1.21514 * 120.00068 * 359.97438 * 4 3 2 6 6 C 1.48188 * 120.00028 * 180.02562 * 4 3 2 7 7 C 1.39107 * 119.69277 * 179.72609 * 6 4 3 8 8 C 1.39292 * 118.97590 * 179.79669 * 7 6 4 9 9 N 1.39913 * 120.82647 * 180.24605 * 8 7 6 10 10 C 1.36630 * 125.67355 * 359.92046 * 9 8 7 11 11 C 1.34810 * 108.19181 * 179.83244 * 10 9 8 12 12 C 1.40981 * 107.48461 * 0.42531 * 11 10 9 13 13 C 1.34815 * 107.47810 * 359.73321 * 12 11 10 14 14 C 1.39283 * 118.35207 * 0.46359 * 8 7 6 15 15 C 1.38337 * 119.27733 * 359.75649 * 14 8 7 16 16 N 1.31597 * 120.97693 * 0.02562 * 15 14 8 17 17 C 1.55448 * 111.11787 * 236.00911 * 2 1 3 18 18 C 1.54321 * 102.96961 * 206.45980 * 17 2 1 19 19 N 1.47026 * 107.26791 * 22.19024 * 18 17 2 20 20 C 1.36940 * 125.64258 * 181.03445 * 19 18 17 21 21 H 1.08003 * 119.99660 * 180.02562 * 20 19 18 22 22 C 1.38811 * 120.00559 * 0.02875 * 20 19 18 23 23 N 1.31617 * 119.99776 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 120.00230 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.46543 * 89.99925 * 24 22 20 26 26 H 1.48496 * 109.46962 * 209.99740 * 24 22 20 27 27 H 1.48497 * 109.47197 * 330.00191 * 24 22 20 28 28 C 1.47419 * 108.70576 * 1.06162 * 19 18 17 29 29 H 1.09000 * 109.47194 * 297.54709 * 1 2 3 30 30 H 1.09001 * 109.47578 * 57.55154 * 1 2 3 31 31 H 1.09003 * 109.46933 * 177.54882 * 1 2 3 32 32 H 0.97001 * 120.00055 * 242.45381 * 3 2 1 33 33 H 1.08002 * 120.51426 * 0.02562 * 7 6 4 34 34 H 1.07994 * 125.89942 * 359.96078 * 10 9 8 35 35 H 1.07998 * 126.26117 * 180.13672 * 11 10 9 36 36 H 1.07995 * 126.26072 * 179.71421 * 12 11 10 37 37 H 1.07997 * 125.90256 * 180.02562 * 13 12 11 38 38 H 1.07998 * 120.36273 * 179.73030 * 14 8 7 39 39 H 1.07998 * 119.50592 * 179.97438 * 15 14 8 40 40 H 1.08998 * 110.70855 * 88.08785 * 17 2 1 41 41 H 1.08998 * 110.85957 * 324.90400 * 17 2 1 42 42 H 1.08998 * 109.88101 * 262.77542 * 18 17 2 43 43 H 1.08997 * 110.01327 * 141.67909 * 18 17 2 44 44 H 0.97004 * 120.00521 * 179.97438 * 23 22 20 45 45 H 1.09002 * 110.36926 * 94.70918 * 28 19 18 46 46 H 1.08995 * 110.36556 * 216.92202 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0530 1.3685 0.0000 4 6 1.7892 2.1907 1.0349 5 8 1.1173 1.7970 1.9677 6 6 2.3177 3.5751 1.0347 7 6 2.0368 4.4201 2.1034 8 6 2.5447 5.7170 2.0898 9 7 2.2905 6.5977 3.1468 10 6 1.5528 6.3132 4.2611 11 6 1.5386 7.4081 5.0474 12 6 2.2854 8.4091 4.3932 13 6 2.7336 7.8872 3.2338 14 6 3.3081 6.1170 0.9956 15 6 3.5401 5.2199 -0.0316 16 7 3.0504 3.9992 0.0117 17 6 2.0901 -0.8107 -1.2023 18 6 3.4707 -1.2757 -0.6934 19 7 3.4280 -1.2429 0.7759 20 6 4.4639 -1.5649 1.6117 21 1 4.3314 -1.5089 2.6821 22 6 5.6841 -1.9633 1.0833 23 7 5.8454 -2.0320 -0.2211 24 14 7.0973 -2.4018 2.2235 25 1 7.0439 -3.8511 2.5429 26 1 8.3867 -2.0890 1.5567 27 1 6.9844 -1.6141 3.4773 28 6 2.0853 -0.8066 1.2002 29 1 -0.3633 0.4753 0.9111 30 1 -0.3634 0.5514 -0.8672 31 1 -0.3633 -1.0268 -0.0440 32 1 2.5890 1.6829 -0.7448 33 1 1.4373 4.0747 2.9327 34 1 1.0670 5.3728 4.4758 35 1 1.0416 7.5029 6.0015 36 1 2.4652 9.4107 4.7546 37 1 3.3388 8.3997 2.5007 38 1 3.7142 7.1167 0.9494 39 1 4.1312 5.5263 -0.8820 40 1 2.1972 -0.1737 -2.0803 41 1 1.4525 -1.6665 -1.4240 42 1 4.2461 -0.6014 -1.0569 43 1 3.6720 -2.2907 -1.0358 44 1 6.6982 -2.3100 -0.5905 45 1 1.4520 -1.6704 1.4024 46 1 2.1542 -0.1725 2.0841 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046759950.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:10:53 Heat of formation + Delta-G solvation = 72.689848 kcal Electronic energy + Delta-G solvation = -29228.746950 eV Core-core repulsion = 25312.705336 eV Total energy + Delta-G solvation = -3916.041614 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.80743 -41.61317 -40.47330 -38.77115 -35.78056 -35.20546 -33.70209 -32.78613 -31.60760 -30.75718 -30.35929 -29.91463 -27.53767 -26.14234 -25.28687 -24.83979 -22.94058 -22.12047 -21.36219 -21.07788 -20.45425 -19.88703 -18.92046 -18.10148 -17.39645 -16.98520 -16.85000 -16.57120 -16.49162 -15.99635 -15.92765 -15.59979 -15.34178 -15.04465 -14.84974 -14.54522 -14.46652 -14.16486 -13.89990 -13.55761 -13.41345 -13.31666 -13.11455 -13.09168 -13.02323 -12.84853 -12.77903 -12.16974 -12.06744 -12.01762 -11.72569 -11.64353 -11.60637 -11.19038 -10.72785 -10.68571 -10.48224 -10.02675 -9.45071 -9.30467 -8.87656 -7.87049 -5.20756 -0.60893 -0.27301 1.28074 1.41182 1.42915 1.51491 1.57034 1.75563 1.99197 2.07658 2.46368 2.73823 3.02687 3.30823 3.41038 3.50940 3.55820 3.70294 3.77266 3.91482 4.03061 4.13025 4.17014 4.23214 4.38397 4.46693 4.54042 4.62965 4.64510 4.67867 4.74718 4.79347 4.85440 4.92168 5.01705 5.06292 5.23020 5.26092 5.30608 5.33725 5.40685 5.60245 5.66539 5.76137 5.87108 6.08820 6.18919 6.28081 6.40961 6.70766 7.10072 7.13820 7.76055 8.40447 9.22791 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011799 B = 0.003058 C = 0.002766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2372.596883 B = 9152.658763 C =10119.811909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.162 3.838 3 N -0.676 5.676 4 C 0.566 3.434 5 O -0.559 6.559 6 C 0.097 3.903 7 C -0.149 4.149 8 C 0.174 3.826 9 N -0.408 5.408 10 C -0.040 4.040 11 C -0.191 4.191 12 C -0.196 4.196 13 C -0.018 4.018 14 C -0.162 4.162 15 C 0.131 3.869 16 N -0.485 5.485 17 C -0.128 4.128 18 C 0.185 3.815 19 N -0.621 5.621 20 C -0.243 4.243 21 H 0.067 0.933 22 C -0.059 4.059 23 N -0.944 5.944 24 Si 0.974 3.026 25 H -0.284 1.284 26 H -0.289 1.289 27 H -0.278 1.278 28 C 0.127 3.873 29 H 0.056 0.944 30 H 0.076 0.924 31 H 0.080 0.920 32 H 0.413 0.587 33 H 0.144 0.856 34 H 0.168 0.832 35 H 0.158 0.842 36 H 0.166 0.834 37 H 0.200 0.800 38 H 0.187 0.813 39 H 0.211 0.789 40 H 0.095 0.905 41 H 0.096 0.904 42 H 0.015 0.985 43 H 0.011 0.989 44 H 0.248 0.752 45 H 0.030 0.970 46 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.975 22.205 -0.527 23.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.076 3.924 3 N -0.325 5.325 4 C 0.351 3.649 5 O -0.438 6.438 6 C -0.041 4.041 7 C -0.172 4.172 8 C 0.072 3.928 9 N -0.082 5.082 10 C -0.165 4.165 11 C -0.215 4.215 12 C -0.219 4.219 13 C -0.143 4.143 14 C -0.183 4.183 15 C -0.029 4.029 16 N -0.198 5.198 17 C -0.166 4.166 18 C 0.061 3.939 19 N -0.347 5.347 20 C -0.372 4.372 21 H 0.085 0.915 22 C -0.253 4.253 23 N -0.593 5.593 24 Si 0.802 3.198 25 H -0.210 1.210 26 H -0.215 1.215 27 H -0.203 1.203 28 C 0.001 3.999 29 H 0.075 0.925 30 H 0.095 0.905 31 H 0.099 0.901 32 H 0.250 0.750 33 H 0.162 0.838 34 H 0.185 0.815 35 H 0.175 0.825 36 H 0.183 0.817 37 H 0.217 0.783 38 H 0.204 0.796 39 H 0.228 0.772 40 H 0.114 0.886 41 H 0.115 0.885 42 H 0.033 0.967 43 H 0.029 0.971 44 H 0.057 0.943 45 H 0.048 0.952 46 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -9.053 21.043 -0.769 22.921 hybrid contribution 1.077 -0.087 1.250 1.652 sum -7.976 20.956 0.481 22.428 Atomic orbital electron populations 1.21916 0.91472 1.03484 1.02850 1.21548 0.94389 0.80365 0.96138 1.45643 1.52742 1.11868 1.22279 1.18070 0.79914 0.84543 0.82357 1.90710 1.40830 1.76399 1.35896 1.20827 0.97096 0.94227 0.91910 1.21682 1.02376 0.92557 1.00552 1.18159 0.96439 0.89165 0.89031 1.41722 1.40592 1.10939 1.14964 1.22312 1.03061 1.02362 0.88742 1.21400 1.05094 0.93345 1.01644 1.21431 1.03534 1.01193 0.95762 1.22577 1.05978 0.83374 1.02358 1.22465 0.99244 1.04196 0.92443 1.23431 0.94574 0.86391 0.98466 1.67611 1.08630 1.18704 1.24826 1.23154 0.96904 1.00022 0.96517 1.20939 0.92878 0.97446 0.82683 1.44677 1.08530 1.78837 1.02641 1.19309 0.90782 1.37851 0.89235 0.91466 1.25529 0.99911 1.02283 0.97548 1.70148 1.24226 1.54449 1.10501 0.85157 0.78805 0.77966 0.77874 1.21035 1.21484 1.20298 1.22001 0.86391 0.95180 0.96314 0.92455 0.90522 0.90071 0.75013 0.83796 0.81508 0.82457 0.81666 0.78346 0.79621 0.77238 0.88640 0.88509 0.96715 0.97057 0.94288 0.95231 0.95095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.01 8.60 71.98 0.62 -3.40 16 2 C 0.16 5.79 0.83 5.10 0.00 5.79 16 3 N -0.68 -23.67 5.16 -418.69 -2.16 -25.83 16 4 C 0.57 20.54 7.21 86.89 0.63 21.16 16 5 O -0.56 -22.73 13.12 -3.76 -0.05 -22.78 16 6 C 0.10 2.97 6.75 41.85 0.28 3.25 16 7 C -0.15 -4.07 9.04 22.73 0.21 -3.87 16 8 C 0.17 3.77 6.65 38.36 0.26 4.03 16 9 N -0.41 -8.32 2.97 -346.10 -1.03 -9.35 16 10 C -0.04 -0.84 10.77 83.16 0.90 0.06 16 11 C -0.19 -3.47 10.86 22.15 0.24 -3.23 16 12 C -0.20 -3.06 10.86 22.16 0.24 -2.82 16 13 C -0.02 -0.28 10.77 83.16 0.90 0.61 16 14 C -0.16 -2.52 9.53 22.54 0.21 -2.30 16 15 C 0.13 2.30 11.17 84.75 0.95 3.25 16 16 N -0.48 -12.86 9.54 -185.13 -1.77 -14.63 16 17 C -0.13 -4.45 6.00 31.88 0.19 -4.25 16 18 C 0.19 9.10 5.37 86.73 0.47 9.56 16 19 N -0.62 -33.35 3.39 -692.01 -2.35 -35.70 16 20 C -0.24 -14.41 10.28 84.03 0.86 -13.55 16 21 H 0.07 3.98 7.83 -2.91 -0.02 3.95 16 22 C -0.06 -3.48 5.49 84.86 0.47 -3.02 16 23 N -0.94 -57.20 10.31 21.65 0.22 -56.98 16 24 Si 0.97 47.49 29.55 68.60 2.03 49.52 16 25 H -0.28 -13.52 7.11 99.48 0.71 -12.81 16 26 H -0.29 -13.88 7.11 99.48 0.71 -13.18 16 27 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 28 C 0.13 5.80 6.10 86.85 0.53 6.33 16 29 H 0.06 1.84 6.53 -2.39 -0.02 1.83 16 30 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 31 H 0.08 2.09 8.12 -2.39 -0.02 2.07 16 32 H 0.41 13.62 7.82 -92.71 -0.73 12.90 16 33 H 0.14 4.08 6.42 -2.91 -0.02 4.06 16 34 H 0.17 3.34 7.09 -2.91 -0.02 3.31 16 35 H 0.16 2.24 8.06 -2.91 -0.02 2.21 16 36 H 0.17 1.72 8.06 -2.91 -0.02 1.70 16 37 H 0.20 1.52 7.08 -2.91 -0.02 1.50 16 38 H 0.19 1.30 6.83 -2.91 -0.02 1.28 16 39 H 0.21 1.92 8.06 -2.91 -0.02 1.89 16 40 H 0.10 2.78 8.05 -2.39 -0.02 2.76 16 41 H 0.10 2.98 8.03 -2.39 -0.02 2.96 16 42 H 0.01 0.80 7.38 -2.39 -0.02 0.78 16 43 H 0.01 0.62 7.50 -2.39 -0.02 0.60 16 44 H 0.25 14.54 8.31 -92.70 -0.77 13.77 16 45 H 0.03 1.33 8.04 -2.39 -0.02 1.31 16 46 H 0.03 1.55 6.31 -2.39 -0.02 1.53 16 Total: -1.00 -77.47 375.29 3.13 -74.34 By element: Atomic # 1 Polarization: 23.50 SS G_CDS: 0.29 Total: 23.79 kcal Atomic # 6 Polarization: 9.68 SS G_CDS: 7.94 Total: 17.62 kcal Atomic # 7 Polarization: -135.40 SS G_CDS: -7.08 Total: -142.48 kcal Atomic # 8 Polarization: -22.73 SS G_CDS: -0.05 Total: -22.78 kcal Atomic # 14 Polarization: 47.49 SS G_CDS: 2.03 Total: 49.52 kcal Total: -77.47 3.13 -74.34 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046759950.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.029 kcal (2) G-P(sol) polarization free energy of solvation -77.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.340 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds