Wall clock time and date at job start Tue Mar 31 2020 23:41:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35364 * 126.38116 * 2 1 4 4 C 1.41501 * 105.49938 * 180.02562 * 3 2 1 5 5 C 1.47716 * 126.51739 * 179.97438 * 4 3 2 6 6 O 1.21568 * 119.99791 * 359.97438 * 5 4 3 7 7 N 1.34780 * 119.99856 * 179.97438 * 5 4 3 8 8 C 1.46502 * 119.99710 * 179.97438 * 7 5 4 9 9 C 1.53004 * 109.46846 * 180.02562 * 8 7 5 10 10 H 1.09002 * 109.76377 * 294.26538 * 9 8 7 11 11 C 1.52791 * 109.76772 * 173.47155 * 9 8 7 12 12 C 1.50603 * 110.84484 * 192.82767 * 11 9 8 13 13 C 1.38975 * 117.63365 * 199.98169 * 12 11 9 14 14 C 1.37907 * 120.57533 * 181.13959 * 13 12 11 15 15 C 1.38261 * 119.83279 * 0.02562 * 14 13 12 16 16 C 1.37959 * 119.71605 * 359.74050 * 15 14 13 17 17 C 1.37668 * 122.84197 * 20.63481 * 12 11 9 18 18 C 1.50808 * 122.33822 * 357.88335 * 17 12 11 19 19 N 1.46686 * 109.68746 * 11.94963 * 18 17 12 20 20 C 1.36942 * 121.31593 * 135.58514 * 19 18 17 21 21 H 1.08003 * 119.99812 * 144.31415 * 20 19 18 22 22 C 1.38803 * 120.00225 * 324.31859 * 20 19 18 23 23 N 1.31622 * 120.00167 * 158.41197 * 22 20 19 24 24 Si 1.86805 * 120.00165 * 338.41250 * 22 20 19 25 25 H 1.48496 * 109.47356 * 95.35059 * 24 22 20 26 26 H 1.48501 * 109.46950 * 215.35004 * 24 22 20 27 27 H 1.48497 * 109.46653 * 335.34765 * 24 22 20 28 28 N 1.31809 * 106.96696 * 0.23567 * 4 3 2 29 29 N 1.28475 * 110.06774 * 359.60209 * 28 4 3 30 30 H 0.97003 * 124.87966 * 180.13119 * 29 28 4 31 31 H 1.09003 * 109.47530 * 89.99730 * 1 2 3 32 32 H 1.09005 * 109.46801 * 209.99810 * 1 2 3 33 33 H 1.08999 * 109.47102 * 329.99515 * 1 2 3 34 34 H 1.07998 * 127.25291 * 0.04667 * 3 2 1 35 35 H 0.97001 * 119.99949 * 359.97438 * 7 5 4 36 36 H 1.08991 * 109.46740 * 60.00501 * 8 7 5 37 37 H 1.09000 * 109.47163 * 299.99858 * 8 7 5 38 38 H 1.08996 * 109.20062 * 72.47774 * 11 9 8 39 39 H 1.09000 * 109.20212 * 313.17951 * 11 9 8 40 40 H 1.08003 * 119.70839 * 1.12138 * 13 12 11 41 41 H 1.08007 * 120.08101 * 179.97438 * 14 13 12 42 42 H 1.07996 * 120.14283 * 179.76798 * 15 14 13 43 43 H 1.08003 * 119.74880 * 180.02562 * 16 15 14 44 44 H 1.08998 * 109.43841 * 132.01475 * 18 17 12 45 45 H 1.08999 * 109.43921 * 251.92961 * 18 17 12 46 46 H 0.97001 * 120.00088 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3099 1.0898 0.0000 4 6 3.6320 0.5854 -0.0006 5 6 4.8764 1.3813 -0.0014 6 8 4.8212 2.5957 -0.0020 7 7 6.0730 0.7610 -0.0014 8 6 7.3072 1.5504 -0.0027 9 6 8.5140 0.6099 -0.0031 10 1 8.5463 0.0513 0.9324 11 6 9.7996 1.4190 -0.1679 12 6 10.9637 0.5170 -0.4833 13 6 12.2422 1.0087 -0.2485 14 6 13.3523 0.2431 -0.5375 15 6 13.1947 -1.0247 -1.0661 16 6 11.9267 -1.5172 -1.2957 17 6 10.8083 -0.7498 -0.9993 18 6 9.4512 -1.3584 -1.2487 19 7 8.4175 -0.3235 -1.1374 20 6 7.4028 -0.2298 -2.0522 21 1 6.4142 0.0664 -1.7336 22 6 7.6447 -0.5153 -3.3888 23 7 6.6474 -0.8430 -4.1828 24 14 9.3858 -0.4348 -4.0609 25 1 9.9893 -1.7914 -4.0363 26 1 9.3543 0.0677 -5.4579 27 1 10.1978 0.4835 -3.2227 28 7 3.5420 -0.7296 -0.0061 29 7 2.3080 -1.0870 -0.0006 30 1 1.9966 -2.0057 -0.0011 31 1 -0.3634 0.0000 -1.0277 32 1 -0.3633 -0.8901 0.5138 33 1 -0.3633 0.8899 0.5139 34 1 2.0056 2.1260 0.0007 35 1 6.1170 -0.2080 -0.0005 36 1 7.3368 2.1797 0.8867 37 1 7.3360 2.1782 -0.8933 38 1 10.0045 1.9587 0.7566 39 1 9.6709 2.1352 -0.9794 40 1 12.3675 1.9991 0.1637 41 1 14.3422 0.6333 -0.3522 42 1 14.0606 -1.6271 -1.2978 43 1 11.8030 -2.5077 -1.7082 44 1 9.4256 -1.7903 -2.2491 45 1 9.2627 -2.1390 -0.5117 46 1 6.8164 -1.0422 -5.1169 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054032543.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:41:24 Heat of formation + Delta-G solvation = 101.235614 kcal Electronic energy + Delta-G solvation = -29671.869298 eV Core-core repulsion = 25757.065521 eV Total energy + Delta-G solvation = -3914.803777 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.41312 -39.68097 -38.72781 -36.64347 -33.83689 -32.93049 -32.58951 -31.75556 -31.58594 -30.38876 -29.35463 -27.01692 -25.89978 -25.48502 -23.40355 -22.88235 -21.70749 -21.08513 -20.95434 -19.59030 -18.89932 -17.48036 -17.10770 -16.31008 -15.96515 -15.66703 -15.41593 -15.18775 -15.02911 -14.52885 -14.43379 -13.83722 -13.71891 -13.45876 -13.33059 -13.06525 -12.99461 -12.86574 -12.74354 -12.56292 -12.26878 -12.23274 -12.07200 -11.58357 -11.40408 -11.16551 -11.05733 -10.63060 -10.56920 -10.34348 -10.23550 -9.99874 -9.59588 -9.47786 -9.12424 -8.76541 -8.59569 -8.39505 -8.14747 -8.04516 -6.91265 -5.95657 -3.40305 1.72994 1.77127 1.95311 2.32311 3.04007 3.32838 3.51110 3.61168 3.77808 4.00263 4.12771 4.54638 4.72085 4.78412 4.81781 5.02863 5.13522 5.20544 5.28225 5.33151 5.36064 5.36116 5.62643 5.65058 5.68147 5.74289 5.81103 5.86697 5.92504 5.99848 6.04542 6.07809 6.21548 6.34262 6.37254 6.40634 6.49802 6.56678 6.61211 6.79440 6.81643 6.86119 7.09229 7.15770 7.18726 7.40374 7.96275 8.01165 8.30451 8.38541 8.84954 8.92345 9.68972 10.08894 11.16580 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.016476 B = 0.003351 C = 0.003051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1699.013753 B = 8352.816391 C = 9173.686777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.002 3.998 3 C -0.180 4.180 4 C -0.001 4.001 5 C 0.598 3.402 6 O -0.552 6.552 7 N -0.686 5.686 8 C 0.136 3.864 9 C 0.158 3.842 10 H 0.050 0.950 11 C -0.096 4.096 12 C -0.056 4.056 13 C -0.127 4.127 14 C -0.133 4.133 15 C -0.130 4.130 16 C -0.126 4.126 17 C -0.081 4.081 18 C 0.167 3.833 19 N -0.600 5.600 20 C -0.282 4.282 21 H 0.114 0.886 22 C 0.039 3.961 23 N -0.897 5.897 24 Si 0.862 3.138 25 H -0.289 1.289 26 H -0.305 1.305 27 H -0.257 1.257 28 N -0.245 5.245 29 N -0.383 5.383 30 H 0.442 0.558 31 H 0.077 0.923 32 H 0.067 0.933 33 H 0.084 0.916 34 H 0.159 0.841 35 H 0.419 0.581 36 H 0.063 0.937 37 H 0.077 0.923 38 H 0.066 0.934 39 H 0.079 0.921 40 H 0.116 0.884 41 H 0.114 0.886 42 H 0.115 0.885 43 H 0.116 0.884 44 H 0.078 0.922 45 H 0.045 0.955 46 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.610 -0.898 10.723 11.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.123 4.123 3 C -0.209 4.209 4 C -0.162 4.162 5 C 0.382 3.618 6 O -0.429 6.429 7 N -0.337 5.337 8 C 0.012 3.988 9 C 0.052 3.948 10 H 0.068 0.932 11 C -0.135 4.135 12 C -0.056 4.056 13 C -0.145 4.145 14 C -0.151 4.151 15 C -0.148 4.148 16 C -0.144 4.144 17 C -0.082 4.082 18 C 0.042 3.958 19 N -0.325 5.325 20 C -0.410 4.410 21 H 0.131 0.869 22 C -0.162 4.162 23 N -0.538 5.538 24 Si 0.692 3.308 25 H -0.217 1.217 26 H -0.234 1.234 27 H -0.181 1.181 28 N -0.080 5.080 29 N -0.097 5.097 30 H 0.286 0.714 31 H 0.096 0.904 32 H 0.086 0.914 33 H 0.102 0.898 34 H 0.177 0.823 35 H 0.258 0.742 36 H 0.081 0.919 37 H 0.095 0.905 38 H 0.085 0.915 39 H 0.098 0.902 40 H 0.134 0.866 41 H 0.132 0.868 42 H 0.133 0.867 43 H 0.135 0.865 44 H 0.095 0.905 45 H 0.063 0.937 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -2.054 -0.985 10.546 10.789 hybrid contribution 0.706 -0.303 -0.977 1.242 sum -1.348 -1.288 9.569 9.749 Atomic orbital electron populations 1.20304 0.86896 1.03546 1.03227 1.21387 0.95190 0.87420 1.08323 1.21473 0.90672 0.99490 1.09221 1.21999 0.95303 0.89679 1.09227 1.16823 0.81870 0.86257 0.76822 1.90730 1.87038 1.13025 1.52090 1.45978 1.04521 1.11776 1.71455 1.21313 0.82305 0.93532 1.01659 1.20879 0.91522 0.90372 0.92045 0.93185 1.20952 0.93845 0.97454 1.01272 1.19481 0.94323 0.94066 0.97759 1.21149 0.92259 0.99545 1.01510 1.20906 0.98109 0.94997 1.01088 1.20938 0.96787 0.96251 1.00827 1.21108 0.92362 0.99951 1.00999 1.20439 0.96828 0.94072 0.96867 1.20112 0.84016 0.91031 1.00595 1.44439 1.29272 1.30216 1.28541 1.19482 0.90005 1.44975 0.86495 0.86943 1.25497 0.96145 0.98449 0.96124 1.69848 1.31104 1.46763 1.06042 0.87184 0.87524 0.78142 0.77977 1.21701 1.23372 1.18124 1.73677 1.01038 1.15170 1.18140 1.43304 1.03093 1.09335 1.53998 0.71420 0.90426 0.91378 0.89764 0.82334 0.74230 0.91929 0.90496 0.91506 0.90242 0.86645 0.86778 0.86696 0.86547 0.90472 0.93697 0.92863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.60 10.44 36.01 0.38 -0.22 16 2 C 0.00 0.03 7.23 -82.21 -0.59 -0.57 16 3 C -0.18 -2.79 10.73 -39.36 -0.42 -3.21 16 4 C 0.00 -0.01 7.13 -82.76 -0.59 -0.60 16 5 C 0.60 12.27 7.81 -12.39 -0.10 12.17 16 6 O -0.55 -12.37 16.93 5.31 0.09 -12.28 16 7 N -0.69 -13.53 3.28 -61.29 -0.20 -13.74 16 8 C 0.14 2.54 4.56 -4.04 -0.02 2.52 16 9 C 0.16 2.92 3.02 -67.64 -0.20 2.71 16 10 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 11 C -0.10 -1.64 5.21 -28.04 -0.15 -1.78 16 12 C -0.06 -1.01 5.63 -104.60 -0.59 -1.60 16 13 C -0.13 -1.98 9.59 -39.43 -0.38 -2.36 16 14 C -0.13 -1.94 10.04 -39.69 -0.40 -2.34 16 15 C -0.13 -1.96 10.05 -39.67 -0.40 -2.36 16 16 C -0.13 -2.18 9.62 -39.46 -0.38 -2.56 16 17 C -0.08 -1.55 4.20 -104.56 -0.44 -1.99 16 18 C 0.17 3.52 5.13 -5.04 -0.03 3.49 16 19 N -0.60 -13.22 2.46 -166.39 -0.41 -13.63 16 20 C -0.28 -7.32 8.34 -15.06 -0.13 -7.44 16 21 H 0.11 3.05 4.85 -52.48 -0.25 2.80 16 22 C 0.04 1.09 5.27 -17.43 -0.09 0.99 16 23 N -0.90 -26.96 13.97 55.49 0.78 -26.19 16 24 Si 0.86 22.13 24.41 -169.99 -4.15 17.99 16 25 H -0.29 -7.25 6.70 56.52 0.38 -6.87 16 26 H -0.31 -8.21 7.11 56.52 0.40 -7.81 16 27 H -0.26 -6.55 6.22 56.52 0.35 -6.20 16 28 N -0.24 -4.22 11.92 33.42 0.40 -3.82 16 29 N -0.38 -4.94 6.83 33.50 0.23 -4.71 16 30 H 0.44 3.95 8.96 -190.43 -1.71 2.25 16 31 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.16 2.24 8.06 -52.49 -0.42 1.82 16 35 H 0.42 8.46 6.84 -40.82 -0.28 8.18 16 36 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.08 1.62 7.89 -51.93 -0.41 1.21 16 38 H 0.07 0.94 8.10 -51.93 -0.42 0.51 16 39 H 0.08 1.46 8.01 -51.93 -0.42 1.05 16 40 H 0.12 1.52 8.05 -52.48 -0.42 1.10 16 41 H 0.11 1.33 8.06 -52.48 -0.42 0.91 16 42 H 0.11 1.41 8.06 -52.49 -0.42 0.99 16 43 H 0.12 1.86 8.05 -52.48 -0.42 1.43 16 44 H 0.08 1.80 3.96 -51.93 -0.21 1.59 16 45 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 46 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 369.90 15.07 5.57 5.57 Total: -1.00 -34.29 369.90 -9.77 -44.06 By element: Atomic # 1 Polarization: 19.43 SS G_CDS: -7.55 Total: 11.88 kcal Atomic # 6 Polarization: -0.62 SS G_CDS: -4.52 Total: -5.15 kcal Atomic # 7 Polarization: -62.87 SS G_CDS: 0.79 Total: -62.08 kcal Atomic # 8 Polarization: -12.37 SS G_CDS: 0.09 Total: -12.28 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -4.15 Total: 17.99 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -34.29 -9.77 -44.06 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054032543.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.299 kcal (2) G-P(sol) polarization free energy of solvation -34.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.063 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds