Wall clock time and date at job start Tue Mar 31 2020 23:41:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35364 * 126.38116 * 2 1 4 4 C 1.41501 * 105.49938 * 180.02562 * 3 2 1 5 5 C 1.47716 * 126.51739 * 179.97438 * 4 3 2 6 6 O 1.21568 * 119.99791 * 359.97438 * 5 4 3 7 7 N 1.34780 * 119.99856 * 179.97438 * 5 4 3 8 8 C 1.46502 * 119.99710 * 179.97438 * 7 5 4 9 9 C 1.53004 * 109.46846 * 180.02562 * 8 7 5 10 10 H 1.09002 * 109.76377 * 294.26538 * 9 8 7 11 11 C 1.52791 * 109.76772 * 173.47155 * 9 8 7 12 12 C 1.50603 * 110.84484 * 192.82767 * 11 9 8 13 13 C 1.38975 * 117.63365 * 199.98169 * 12 11 9 14 14 C 1.37907 * 120.57533 * 181.13959 * 13 12 11 15 15 C 1.38261 * 119.83279 * 0.02562 * 14 13 12 16 16 C 1.37959 * 119.71605 * 359.74050 * 15 14 13 17 17 C 1.37668 * 122.84197 * 20.63481 * 12 11 9 18 18 C 1.50808 * 122.33822 * 357.88335 * 17 12 11 19 19 N 1.46686 * 109.68746 * 11.94963 * 18 17 12 20 20 C 1.36942 * 121.31593 * 135.58514 * 19 18 17 21 21 H 1.08003 * 119.99812 * 144.31415 * 20 19 18 22 22 C 1.38803 * 120.00225 * 324.31859 * 20 19 18 23 23 N 1.31622 * 120.00167 * 158.41197 * 22 20 19 24 24 Si 1.86805 * 120.00165 * 338.41250 * 22 20 19 25 25 H 1.48496 * 109.47356 * 95.35059 * 24 22 20 26 26 H 1.48501 * 109.46950 * 215.35004 * 24 22 20 27 27 H 1.48497 * 109.46653 * 335.34765 * 24 22 20 28 28 N 1.31809 * 106.96696 * 0.23567 * 4 3 2 29 29 N 1.28475 * 110.06774 * 359.60209 * 28 4 3 30 30 H 0.97003 * 124.87966 * 180.13119 * 29 28 4 31 31 H 1.09003 * 109.47530 * 89.99730 * 1 2 3 32 32 H 1.09005 * 109.46801 * 209.99810 * 1 2 3 33 33 H 1.08999 * 109.47102 * 329.99515 * 1 2 3 34 34 H 1.07998 * 127.25291 * 0.04667 * 3 2 1 35 35 H 0.97001 * 119.99949 * 359.97438 * 7 5 4 36 36 H 1.08991 * 109.46740 * 60.00501 * 8 7 5 37 37 H 1.09000 * 109.47163 * 299.99858 * 8 7 5 38 38 H 1.08996 * 109.20062 * 72.47774 * 11 9 8 39 39 H 1.09000 * 109.20212 * 313.17951 * 11 9 8 40 40 H 1.08003 * 119.70839 * 1.12138 * 13 12 11 41 41 H 1.08007 * 120.08101 * 179.97438 * 14 13 12 42 42 H 1.07996 * 120.14283 * 179.76798 * 15 14 13 43 43 H 1.08003 * 119.74880 * 180.02562 * 16 15 14 44 44 H 1.08998 * 109.43841 * 132.01475 * 18 17 12 45 45 H 1.08999 * 109.43921 * 251.92961 * 18 17 12 46 46 H 0.97001 * 120.00088 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3099 1.0898 0.0000 4 6 3.6320 0.5854 -0.0006 5 6 4.8764 1.3813 -0.0014 6 8 4.8212 2.5957 -0.0020 7 7 6.0730 0.7610 -0.0014 8 6 7.3072 1.5504 -0.0027 9 6 8.5140 0.6099 -0.0031 10 1 8.5463 0.0513 0.9324 11 6 9.7996 1.4190 -0.1679 12 6 10.9637 0.5170 -0.4833 13 6 12.2422 1.0087 -0.2485 14 6 13.3523 0.2431 -0.5375 15 6 13.1947 -1.0247 -1.0661 16 6 11.9267 -1.5172 -1.2957 17 6 10.8083 -0.7498 -0.9993 18 6 9.4512 -1.3584 -1.2487 19 7 8.4175 -0.3235 -1.1374 20 6 7.4028 -0.2298 -2.0522 21 1 6.4142 0.0664 -1.7336 22 6 7.6447 -0.5153 -3.3888 23 7 6.6474 -0.8430 -4.1828 24 14 9.3858 -0.4348 -4.0609 25 1 9.9893 -1.7914 -4.0363 26 1 9.3543 0.0677 -5.4579 27 1 10.1978 0.4835 -3.2227 28 7 3.5420 -0.7296 -0.0061 29 7 2.3080 -1.0870 -0.0006 30 1 1.9966 -2.0057 -0.0011 31 1 -0.3634 0.0000 -1.0277 32 1 -0.3633 -0.8901 0.5138 33 1 -0.3633 0.8899 0.5139 34 1 2.0056 2.1260 0.0007 35 1 6.1170 -0.2080 -0.0005 36 1 7.3368 2.1797 0.8867 37 1 7.3360 2.1782 -0.8933 38 1 10.0045 1.9587 0.7566 39 1 9.6709 2.1352 -0.9794 40 1 12.3675 1.9991 0.1637 41 1 14.3422 0.6333 -0.3522 42 1 14.0606 -1.6271 -1.2978 43 1 11.8030 -2.5077 -1.7082 44 1 9.4256 -1.7903 -2.2491 45 1 9.2627 -2.1390 -0.5117 46 1 6.8164 -1.0422 -5.1169 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054032543.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:41:23 Heat of formation + Delta-G solvation = 77.968665 kcal Electronic energy + Delta-G solvation = -29672.878228 eV Core-core repulsion = 25757.065521 eV Total energy + Delta-G solvation = -3915.812707 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.59140 -41.11232 -40.24470 -38.18880 -35.45265 -34.57123 -33.65469 -33.35935 -32.83298 -31.89659 -30.80845 -27.94868 -27.40333 -27.08849 -24.94220 -24.47278 -23.00032 -22.44672 -22.14743 -21.10407 -20.50109 -18.81067 -18.58400 -17.78990 -17.47856 -17.04189 -16.92656 -16.75194 -16.50499 -16.00228 -15.78325 -15.30347 -15.10235 -14.86759 -14.74100 -14.60915 -14.31487 -14.02118 -13.97554 -13.87671 -13.73633 -13.59552 -13.10104 -13.03206 -12.90167 -12.77004 -12.57584 -12.25910 -12.13572 -11.86158 -11.77712 -11.58848 -11.44344 -11.13007 -10.66716 -10.40124 -9.86746 -9.79656 -9.62780 -9.37718 -8.79237 -8.11887 -5.49917 0.49295 0.51213 0.60831 1.18676 1.25337 1.38610 1.51825 1.97324 2.33944 2.45240 2.51101 2.87781 3.07324 3.24033 3.51360 3.75466 3.86723 3.91535 4.09918 4.14836 4.16541 4.33556 4.36766 4.37770 4.50555 4.57585 4.63674 4.67031 4.71058 4.82946 4.83620 4.87239 4.88560 4.93070 5.07746 5.14537 5.15871 5.18891 5.34618 5.41639 5.55114 5.59467 5.62515 5.81611 5.96502 6.17675 6.19938 6.30782 6.57402 6.93985 6.96618 7.26121 7.62639 8.09040 9.03807 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.016476 B = 0.003351 C = 0.003051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1699.013753 B = 8352.816391 C = 9173.686777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.031 3.969 3 C -0.209 4.209 4 C -0.035 4.035 5 C 0.592 3.408 6 O -0.580 6.580 7 N -0.686 5.686 8 C 0.137 3.863 9 C 0.161 3.839 10 H 0.070 0.930 11 C -0.090 4.090 12 C -0.078 4.078 13 C -0.127 4.127 14 C -0.126 4.126 15 C -0.127 4.127 16 C -0.143 4.143 17 C -0.109 4.109 18 C 0.168 3.832 19 N -0.611 5.611 20 C -0.247 4.247 21 H 0.098 0.902 22 C -0.020 4.020 23 N -0.946 5.946 24 Si 0.919 3.081 25 H -0.285 1.285 26 H -0.326 1.326 27 H -0.253 1.253 28 N -0.273 5.273 29 N -0.367 5.367 30 H 0.459 0.541 31 H 0.089 0.911 32 H 0.096 0.904 33 H 0.099 0.901 34 H 0.164 0.836 35 H 0.415 0.585 36 H 0.089 0.911 37 H 0.047 0.953 38 H 0.105 0.895 39 H 0.062 0.938 40 H 0.143 0.857 41 H 0.151 0.849 42 H 0.146 0.854 43 H 0.119 0.881 44 H 0.049 0.951 45 H 0.054 0.946 46 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.384 -0.875 12.857 12.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.096 4.096 3 C -0.237 4.237 4 C -0.195 4.195 5 C 0.377 3.623 6 O -0.460 6.460 7 N -0.336 5.336 8 C 0.014 3.986 9 C 0.056 3.944 10 H 0.088 0.912 11 C -0.130 4.130 12 C -0.078 4.078 13 C -0.145 4.145 14 C -0.144 4.144 15 C -0.145 4.145 16 C -0.161 4.161 17 C -0.110 4.110 18 C 0.043 3.957 19 N -0.336 5.336 20 C -0.376 4.376 21 H 0.115 0.885 22 C -0.216 4.216 23 N -0.592 5.592 24 Si 0.750 3.250 25 H -0.212 1.212 26 H -0.257 1.257 27 H -0.177 1.177 28 N -0.110 5.110 29 N -0.085 5.085 30 H 0.307 0.693 31 H 0.108 0.892 32 H 0.115 0.885 33 H 0.118 0.882 34 H 0.182 0.818 35 H 0.253 0.747 36 H 0.107 0.893 37 H 0.065 0.935 38 H 0.123 0.877 39 H 0.080 0.920 40 H 0.161 0.839 41 H 0.169 0.831 42 H 0.164 0.836 43 H 0.137 0.863 44 H 0.067 0.933 45 H 0.072 0.928 46 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -0.780 -0.984 12.730 12.791 hybrid contribution 0.289 -0.348 -1.491 1.558 sum -0.491 -1.332 11.239 11.328 Atomic orbital electron populations 1.20533 0.82812 1.05764 1.04636 1.22038 0.97192 0.85836 1.04525 1.21722 0.90022 1.00918 1.10997 1.21908 0.95513 0.90414 1.11683 1.17217 0.82723 0.86240 0.76100 1.90684 1.87590 1.14139 1.53581 1.46006 1.04884 1.11541 1.71175 1.21358 0.82277 0.93523 1.01467 1.21008 0.92271 0.90054 0.91084 0.91198 1.20891 0.92630 0.96935 1.02494 1.19672 0.95700 0.93813 0.98662 1.21475 0.91408 1.00830 1.00806 1.21384 0.99521 0.94376 0.99120 1.21332 0.96728 0.96896 0.99546 1.21288 0.92999 1.00265 1.01554 1.20321 0.95941 0.95379 0.99375 1.20048 0.85241 0.91071 0.99302 1.44515 1.28847 1.31811 1.28444 1.19525 0.90605 1.40785 0.86727 0.88509 1.25979 0.98394 1.00278 0.96917 1.69961 1.32688 1.50526 1.06037 0.86256 0.84675 0.78123 0.75975 1.21222 1.25661 1.17705 1.73572 1.03302 1.14771 1.19387 1.43416 1.02123 1.10665 1.52263 0.69315 0.89206 0.88503 0.88246 0.81804 0.74673 0.89266 0.93466 0.87706 0.91988 0.83909 0.83114 0.83635 0.86257 0.93261 0.92803 0.93541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.91 10.44 71.24 0.74 -0.17 16 2 C 0.03 0.70 7.23 41.40 0.30 1.00 16 3 C -0.21 -6.48 10.73 22.41 0.24 -6.24 16 4 C -0.04 -1.35 7.13 42.46 0.30 -1.05 16 5 C 0.59 25.36 7.81 86.75 0.68 26.04 16 6 O -0.58 -27.13 16.93 -3.93 -0.07 -27.20 16 7 N -0.69 -28.06 3.28 -466.09 -1.53 -29.58 16 8 C 0.14 5.20 4.56 86.38 0.39 5.59 16 9 C 0.16 5.84 3.02 44.79 0.14 5.98 16 10 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 11 C -0.09 -2.93 5.21 29.75 0.16 -2.77 16 12 C -0.08 -2.65 5.63 -19.85 -0.11 -2.76 16 13 C -0.13 -3.49 9.59 22.37 0.21 -3.27 16 14 C -0.13 -3.09 10.04 22.20 0.22 -2.86 16 15 C -0.13 -3.37 10.05 22.21 0.22 -3.14 16 16 C -0.14 -4.67 9.62 22.35 0.22 -4.46 16 17 C -0.11 -4.06 4.20 -19.82 -0.08 -4.14 16 18 C 0.17 7.09 5.13 85.63 0.44 7.53 16 19 N -0.61 -27.26 2.46 -680.35 -1.68 -28.93 16 20 C -0.25 -13.29 8.34 84.03 0.70 -12.58 16 21 H 0.10 5.52 4.85 -2.91 -0.01 5.50 16 22 C -0.02 -1.17 5.27 84.86 0.45 -0.73 16 23 N -0.95 -59.78 13.97 21.65 0.30 -59.48 16 24 Si 0.92 47.95 24.41 68.60 1.67 49.63 16 25 H -0.28 -14.37 6.70 99.48 0.67 -13.70 16 26 H -0.33 -17.94 7.11 99.48 0.71 -17.23 16 27 H -0.25 -12.85 6.22 99.48 0.62 -12.23 16 28 N -0.27 -9.61 11.92 -48.17 -0.57 -10.19 16 29 N -0.37 -9.15 6.83 -47.93 -0.33 -9.48 16 30 H 0.46 7.50 8.96 -219.99 -1.97 5.53 16 31 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.10 0.62 8.14 -2.38 -0.02 0.60 16 33 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 34 H 0.16 4.72 8.06 -2.91 -0.02 4.70 16 35 H 0.42 17.45 6.84 -92.71 -0.63 16.82 16 36 H 0.09 2.89 8.14 -2.39 -0.02 2.87 16 37 H 0.05 2.07 7.89 -2.39 -0.02 2.05 16 38 H 0.10 2.57 8.10 -2.39 -0.02 2.55 16 39 H 0.06 2.23 8.01 -2.39 -0.02 2.21 16 40 H 0.14 3.06 8.05 -2.91 -0.02 3.04 16 41 H 0.15 2.59 8.06 -2.91 -0.02 2.57 16 42 H 0.15 2.91 8.06 -2.91 -0.02 2.88 16 43 H 0.12 3.69 8.05 -2.91 -0.02 3.67 16 44 H 0.05 2.34 3.96 -2.39 -0.01 2.33 16 45 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 46 H 0.26 15.65 8.31 -92.71 -0.77 14.88 16 Total: -1.00 -79.36 369.90 1.32 -78.04 By element: Atomic # 1 Polarization: 36.93 SS G_CDS: -1.70 Total: 35.23 kcal Atomic # 6 Polarization: -3.25 SS G_CDS: 5.22 Total: 1.97 kcal Atomic # 7 Polarization: -133.86 SS G_CDS: -3.80 Total: -137.67 kcal Atomic # 8 Polarization: -27.13 SS G_CDS: -0.07 Total: -27.20 kcal Atomic # 14 Polarization: 47.95 SS G_CDS: 1.67 Total: 49.63 kcal Total: -79.36 1.32 -78.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054032543.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.005 kcal (2) G-P(sol) polarization free energy of solvation -79.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.037 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds