Wall clock time and date at job start Tue Mar 31 2020 23:21:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30447 * 125.98828 * 2 1 4 4 N 1.39931 * 108.89576 * 179.97438 * 3 2 1 5 5 H 0.97006 * 125.75125 * 179.97438 * 4 3 2 6 6 C 1.34261 * 108.49350 * 359.75038 * 4 3 2 7 7 C 1.38038 * 107.41735 * 0.39751 * 6 4 3 8 8 C 1.47425 * 126.41757 * 179.87411 * 7 6 4 9 9 O 1.21608 * 120.00073 * 179.68606 * 8 7 6 10 10 N 1.34774 * 119.99984 * 359.68387 * 8 7 6 11 11 C 1.46503 * 120.00281 * 180.02562 * 10 8 7 12 12 C 1.52994 * 109.47044 * 179.97438 * 11 10 8 13 13 H 1.09002 * 109.76722 * 294.25309 * 12 11 10 14 14 C 1.52790 * 109.81444 * 173.49285 * 12 11 10 15 15 C 1.50597 * 110.84878 * 192.79811 * 14 12 11 16 16 C 1.38977 * 117.63551 * 199.98048 * 15 14 12 17 17 C 1.37907 * 120.57911 * 181.14474 * 16 15 14 18 18 C 1.38266 * 119.82945 * 0.02562 * 17 16 15 19 19 C 1.37961 * 119.71559 * 359.74353 * 18 17 16 20 20 C 1.37673 * 122.84381 * 20.64161 * 15 14 12 21 21 C 1.50810 * 122.33114 * 357.87664 * 20 15 14 22 22 N 1.46674 * 109.69213 * 11.95204 * 21 20 15 23 23 C 1.36941 * 121.31778 * 135.58232 * 22 21 20 24 24 H 1.08003 * 119.99775 * 144.31973 * 23 22 21 25 25 C 1.38803 * 120.00198 * 324.32234 * 23 22 21 26 26 N 1.31620 * 120.00325 * 158.40058 * 25 23 22 27 27 Si 1.86805 * 120.00165 * 338.40569 * 25 23 22 28 28 H 1.48496 * 109.47356 * 95.35059 * 27 25 23 29 29 H 1.48501 * 109.46950 * 215.35004 * 27 25 23 30 30 H 1.48497 * 109.46653 * 335.34765 * 27 25 23 31 31 H 1.08999 * 109.46903 * 269.99945 * 1 2 3 32 32 H 1.09001 * 109.46630 * 30.00220 * 1 2 3 33 33 H 1.09001 * 109.46716 * 150.00052 * 1 2 3 34 34 H 1.07999 * 126.28887 * 180.23995 * 6 4 3 35 35 H 0.97000 * 119.99920 * 359.97438 * 10 8 7 36 36 H 1.09003 * 109.46989 * 59.99594 * 11 10 8 37 37 H 1.08996 * 109.46546 * 300.00028 * 11 10 8 38 38 H 1.09000 * 109.20332 * 72.44908 * 14 12 11 39 39 H 1.08996 * 109.20304 * 313.15877 * 14 12 11 40 40 H 1.08001 * 119.71204 * 1.12537 * 16 15 14 41 41 H 1.07999 * 120.08617 * 179.97438 * 17 16 15 42 42 H 1.07996 * 120.13949 * 179.76798 * 18 17 16 43 43 H 1.08000 * 119.74810 * 180.02562 * 19 18 17 44 44 H 1.08998 * 109.43583 * 132.01987 * 21 20 15 45 45 H 1.08999 * 109.43434 * 251.93019 * 21 20 15 46 46 H 0.97000 * 120.00788 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2736 1.0555 0.0000 4 7 3.6111 0.6442 0.0006 5 1 4.3842 1.2301 0.0004 6 6 3.6439 -0.6980 0.0065 7 6 2.3373 -1.1433 0.0005 8 6 1.8916 -2.5485 0.0012 9 8 0.7039 -2.8097 0.0013 10 7 2.8004 -3.5437 0.0018 11 6 2.3575 -4.9402 0.0019 12 6 3.5784 -5.8624 0.0019 13 1 4.1264 -5.7484 -0.9334 14 6 3.1308 -7.3141 0.1649 15 6 4.3040 -8.2046 0.4791 16 6 4.1611 -9.5666 0.2426 17 6 5.1885 -10.4403 0.5306 18 6 6.3720 -9.9597 1.0598 19 6 6.5184 -8.6076 1.2912 20 6 5.4871 -7.7264 0.9958 21 6 5.7224 -6.2581 1.2471 22 7 4.4548 -5.5284 1.1367 23 6 4.1008 -4.5740 2.0526 24 1 3.5582 -3.6958 1.7352 25 6 4.4394 -4.7352 3.3891 26 7 4.4970 -3.6880 4.1843 27 14 4.8134 -6.4384 4.0590 28 1 6.2801 -6.6690 4.0342 29 1 4.3199 -6.5401 5.4560 30 1 4.1373 -7.4598 3.2196 31 1 -0.3633 0.0000 1.0277 32 1 -0.3632 0.8900 -0.5139 33 1 -0.3633 -0.8900 -0.5138 34 1 4.5298 -1.3157 0.0121 35 1 3.7478 -3.3354 0.0013 36 1 1.7582 -5.1314 -0.8883 37 1 1.7576 -5.1309 0.8917 38 1 2.6627 -7.6510 -0.7600 39 1 2.4057 -7.3768 0.9763 40 1 3.2372 -9.9442 -0.1701 41 1 5.0686 -11.4973 0.3440 42 1 7.1784 -10.6399 1.2907 43 1 7.4428 -8.2316 1.7042 44 1 6.1329 -6.1226 2.2477 45 1 6.4274 -5.8725 0.5106 46 1 4.7340 -3.8005 5.1182 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054049114.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:21:37 Heat of formation + Delta-G solvation = 98.162954 kcal Electronic energy + Delta-G solvation = -29912.465476 eV Core-core repulsion = 25997.528458 eV Total energy + Delta-G solvation = -3914.937017 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.13725 -39.70434 -38.59163 -36.66224 -33.90481 -32.96319 -32.67343 -31.80680 -30.81563 -30.03250 -29.15219 -27.74377 -25.77195 -25.37174 -23.21907 -22.62756 -21.75662 -21.19122 -20.05360 -19.47267 -19.00672 -18.22338 -16.82931 -16.32374 -15.78982 -15.49430 -15.32200 -15.03481 -14.87266 -14.54181 -14.43942 -14.01924 -13.71037 -13.39556 -13.24000 -12.92843 -12.79110 -12.69239 -12.60962 -12.57100 -12.29824 -12.12475 -11.78504 -11.62045 -11.44313 -11.20962 -11.10323 -10.73412 -10.67963 -10.40389 -10.29216 -10.03921 -9.60478 -9.33370 -9.24582 -8.67209 -8.59724 -8.43908 -8.13546 -8.08005 -6.99065 -6.04961 -3.49725 1.68593 1.72582 1.79414 2.43537 2.88964 3.26999 3.46436 3.56085 3.84039 4.02163 4.08628 4.47735 4.73286 4.77222 4.91836 5.08799 5.16185 5.20954 5.28441 5.31391 5.39163 5.59826 5.60977 5.70623 5.73089 5.81283 5.88047 5.92699 5.95139 6.01352 6.08791 6.17890 6.23018 6.31535 6.32117 6.35798 6.43678 6.52550 6.71798 6.76230 6.77565 6.81778 7.08249 7.13952 7.27280 7.35948 7.72113 7.88115 8.20835 8.29634 8.83534 8.91327 9.60580 10.01091 11.07070 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.015757 B = 0.003548 C = 0.003222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1776.531183 B = 7889.861372 C = 8686.820912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.132 3.868 3 N -0.310 5.310 4 N -0.465 5.465 5 H 0.441 0.559 6 C 0.115 3.885 7 C -0.280 4.280 8 C 0.591 3.409 9 O -0.559 6.559 10 N -0.700 5.700 11 C 0.139 3.861 12 C 0.158 3.842 13 H 0.050 0.950 14 C -0.096 4.096 15 C -0.056 4.056 16 C -0.127 4.127 17 C -0.132 4.132 18 C -0.130 4.130 19 C -0.126 4.126 20 C -0.082 4.082 21 C 0.168 3.832 22 N -0.600 5.600 23 C -0.287 4.287 24 H 0.115 0.885 25 C 0.040 3.960 26 N -0.896 5.896 27 Si 0.862 3.138 28 H -0.289 1.289 29 H -0.305 1.305 30 H -0.257 1.257 31 H 0.079 0.921 32 H 0.066 0.934 33 H 0.095 0.905 34 H 0.188 0.812 35 H 0.408 0.592 36 H 0.060 0.940 37 H 0.075 0.925 38 H 0.066 0.934 39 H 0.079 0.921 40 H 0.116 0.884 41 H 0.114 0.886 42 H 0.115 0.885 43 H 0.116 0.884 44 H 0.077 0.923 45 H 0.045 0.955 46 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.790 -1.869 -10.703 11.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.036 4.036 3 N -0.133 5.133 4 N -0.169 5.169 5 H 0.285 0.715 6 C -0.038 4.038 7 C -0.294 4.294 8 C 0.378 3.622 9 O -0.439 6.439 10 N -0.351 5.351 11 C 0.015 3.985 12 C 0.051 3.949 13 H 0.067 0.933 14 C -0.136 4.136 15 C -0.056 4.056 16 C -0.145 4.145 17 C -0.151 4.151 18 C -0.148 4.148 19 C -0.144 4.144 20 C -0.083 4.083 21 C 0.043 3.957 22 N -0.325 5.325 23 C -0.414 4.414 24 H 0.132 0.868 25 C -0.161 4.161 26 N -0.537 5.537 27 Si 0.692 3.308 28 H -0.217 1.217 29 H -0.233 1.233 30 H -0.181 1.181 31 H 0.097 0.903 32 H 0.085 0.915 33 H 0.114 0.886 34 H 0.204 0.796 35 H 0.245 0.755 36 H 0.078 0.922 37 H 0.093 0.907 38 H 0.085 0.915 39 H 0.097 0.903 40 H 0.134 0.866 41 H 0.132 0.868 42 H 0.133 0.867 43 H 0.134 0.866 44 H 0.095 0.905 45 H 0.062 0.938 46 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.975 -0.692 -10.531 10.599 hybrid contribution 1.478 -1.834 1.022 2.567 sum 2.454 -2.526 -9.510 10.141 Atomic orbital electron populations 1.20317 0.85941 1.03633 1.03544 1.22428 0.97228 0.88876 0.95054 1.77067 0.86399 1.22606 1.27266 1.46010 1.07601 1.05537 1.57795 0.71462 1.23239 0.99387 0.85404 0.95761 1.20324 0.91997 0.94844 1.22275 1.17141 0.85585 0.83500 0.75963 1.90679 1.16509 1.84412 1.52284 1.45900 1.10049 1.05686 1.73459 1.21227 0.95907 0.79835 1.01503 1.20890 0.90888 0.91156 0.91928 0.93260 1.20952 0.95512 0.95837 1.01276 1.19481 0.94786 0.93594 0.97720 1.21157 0.98767 0.93071 1.01494 1.20915 0.94099 0.99025 1.01014 1.20945 0.97741 0.95330 1.00797 1.21105 0.98883 0.93441 1.00999 1.20426 0.93213 0.97691 0.96982 1.20101 0.89316 0.85750 1.00536 1.44464 1.15195 1.44362 1.28488 1.19479 1.36909 0.98515 0.86509 0.86850 1.25504 0.98333 0.96130 0.96124 1.69816 1.49156 1.28579 1.06140 0.87194 0.77478 0.88125 0.78051 1.21695 1.23324 1.18145 0.90273 0.91495 0.88591 0.79551 0.75485 0.92161 0.90708 0.91540 0.90273 0.86641 0.86762 0.86686 0.86558 0.90506 0.93756 0.92735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.07 9.92 36.01 0.36 -0.72 16 2 C 0.13 2.15 7.26 -82.02 -0.60 1.56 16 3 N -0.31 -4.80 12.63 33.90 0.43 -4.37 16 4 N -0.47 -5.86 7.29 30.85 0.22 -5.64 16 5 H 0.44 3.84 8.96 -182.72 -1.64 2.20 16 6 C 0.11 1.56 11.52 -16.56 -0.19 1.37 16 7 C -0.28 -4.67 6.13 -105.07 -0.64 -5.31 16 8 C 0.59 10.98 7.80 -12.52 -0.10 10.88 16 9 O -0.56 -11.66 14.92 5.27 0.08 -11.58 16 10 N -0.70 -12.16 3.27 -61.39 -0.20 -12.36 16 11 C 0.14 2.41 4.56 -4.04 -0.02 2.39 16 12 C 0.16 2.69 3.02 -67.65 -0.20 2.49 16 13 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 14 C -0.10 -1.57 5.21 -28.04 -0.15 -1.71 16 15 C -0.06 -0.96 5.63 -104.60 -0.59 -1.55 16 16 C -0.13 -1.91 9.59 -39.43 -0.38 -2.29 16 17 C -0.13 -1.86 10.04 -39.69 -0.40 -2.26 16 18 C -0.13 -1.89 10.05 -39.67 -0.40 -2.29 16 19 C -0.13 -2.08 9.62 -39.46 -0.38 -2.46 16 20 C -0.08 -1.50 4.20 -104.56 -0.44 -1.94 16 21 C 0.17 3.30 5.13 -5.05 -0.03 3.27 16 22 N -0.60 -12.23 2.46 -166.41 -0.41 -12.64 16 23 C -0.29 -6.90 8.34 -15.06 -0.13 -7.02 16 24 H 0.11 2.80 4.85 -52.48 -0.25 2.54 16 25 C 0.04 1.08 5.27 -17.43 -0.09 0.98 16 26 N -0.90 -25.68 13.97 55.49 0.78 -24.90 16 27 Si 0.86 21.35 24.41 -169.99 -4.15 17.20 16 28 H -0.29 -6.99 6.70 56.52 0.38 -6.61 16 29 H -0.31 -7.99 7.11 56.52 0.40 -7.58 16 30 H -0.26 -6.37 6.22 56.52 0.35 -6.02 16 31 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.10 1.44 6.55 -51.93 -0.34 1.10 16 34 H 0.19 2.05 7.46 -52.49 -0.39 1.66 16 35 H 0.41 6.75 6.04 -40.82 -0.25 6.50 16 36 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 37 H 0.07 1.51 7.89 -51.93 -0.41 1.10 16 38 H 0.07 0.89 8.10 -51.93 -0.42 0.47 16 39 H 0.08 1.40 8.02 -51.93 -0.42 0.99 16 40 H 0.12 1.47 8.05 -52.49 -0.42 1.04 16 41 H 0.11 1.28 8.06 -52.49 -0.42 0.86 16 42 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 43 H 0.12 1.77 8.05 -52.49 -0.42 1.34 16 44 H 0.08 1.69 3.96 -51.93 -0.21 1.48 16 45 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 46 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 365.37 15.07 5.51 5.51 Total: -1.00 -32.66 365.37 -9.45 -42.11 By element: Atomic # 1 Polarization: 18.61 SS G_CDS: -7.34 Total: 11.27 kcal Atomic # 6 Polarization: -0.24 SS G_CDS: -4.37 Total: -4.61 kcal Atomic # 7 Polarization: -60.72 SS G_CDS: 0.82 Total: -59.91 kcal Atomic # 8 Polarization: -11.66 SS G_CDS: 0.08 Total: -11.58 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -4.15 Total: 17.20 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -32.66 -9.45 -42.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054049114.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.277 kcal (2) G-P(sol) polarization free energy of solvation -32.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.114 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds