Wall clock time and date at job start Tue Mar 31 2020 23:21:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30447 * 125.98828 * 2 1 4 4 N 1.39931 * 108.89576 * 179.97438 * 3 2 1 5 5 H 0.97006 * 125.75125 * 179.97438 * 4 3 2 6 6 C 1.34261 * 108.49350 * 359.75038 * 4 3 2 7 7 C 1.38038 * 107.41735 * 0.39751 * 6 4 3 8 8 C 1.47425 * 126.41757 * 179.87411 * 7 6 4 9 9 O 1.21608 * 120.00073 * 179.68606 * 8 7 6 10 10 N 1.34774 * 119.99984 * 359.68387 * 8 7 6 11 11 C 1.46503 * 120.00281 * 180.02562 * 10 8 7 12 12 C 1.52994 * 109.47044 * 179.97438 * 11 10 8 13 13 H 1.09002 * 109.76722 * 294.25309 * 12 11 10 14 14 C 1.52790 * 109.81444 * 173.49285 * 12 11 10 15 15 C 1.50597 * 110.84878 * 192.79811 * 14 12 11 16 16 C 1.38977 * 117.63551 * 199.98048 * 15 14 12 17 17 C 1.37907 * 120.57911 * 181.14474 * 16 15 14 18 18 C 1.38266 * 119.82945 * 0.02562 * 17 16 15 19 19 C 1.37961 * 119.71559 * 359.74353 * 18 17 16 20 20 C 1.37673 * 122.84381 * 20.64161 * 15 14 12 21 21 C 1.50810 * 122.33114 * 357.87664 * 20 15 14 22 22 N 1.46674 * 109.69213 * 11.95204 * 21 20 15 23 23 C 1.36941 * 121.31778 * 135.58232 * 22 21 20 24 24 H 1.08003 * 119.99775 * 144.31973 * 23 22 21 25 25 C 1.38803 * 120.00198 * 324.32234 * 23 22 21 26 26 N 1.31620 * 120.00325 * 158.40058 * 25 23 22 27 27 Si 1.86805 * 120.00165 * 338.40569 * 25 23 22 28 28 H 1.48496 * 109.47356 * 95.35059 * 27 25 23 29 29 H 1.48501 * 109.46950 * 215.35004 * 27 25 23 30 30 H 1.48497 * 109.46653 * 335.34765 * 27 25 23 31 31 H 1.08999 * 109.46903 * 269.99945 * 1 2 3 32 32 H 1.09001 * 109.46630 * 30.00220 * 1 2 3 33 33 H 1.09001 * 109.46716 * 150.00052 * 1 2 3 34 34 H 1.07999 * 126.28887 * 180.23995 * 6 4 3 35 35 H 0.97000 * 119.99920 * 359.97438 * 10 8 7 36 36 H 1.09003 * 109.46989 * 59.99594 * 11 10 8 37 37 H 1.08996 * 109.46546 * 300.00028 * 11 10 8 38 38 H 1.09000 * 109.20332 * 72.44908 * 14 12 11 39 39 H 1.08996 * 109.20304 * 313.15877 * 14 12 11 40 40 H 1.08001 * 119.71204 * 1.12537 * 16 15 14 41 41 H 1.07999 * 120.08617 * 179.97438 * 17 16 15 42 42 H 1.07996 * 120.13949 * 179.76798 * 18 17 16 43 43 H 1.08000 * 119.74810 * 180.02562 * 19 18 17 44 44 H 1.08998 * 109.43583 * 132.01987 * 21 20 15 45 45 H 1.08999 * 109.43434 * 251.93019 * 21 20 15 46 46 H 0.97000 * 120.00788 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2736 1.0555 0.0000 4 7 3.6111 0.6442 0.0006 5 1 4.3842 1.2301 0.0004 6 6 3.6439 -0.6980 0.0065 7 6 2.3373 -1.1433 0.0005 8 6 1.8916 -2.5485 0.0012 9 8 0.7039 -2.8097 0.0013 10 7 2.8004 -3.5437 0.0018 11 6 2.3575 -4.9402 0.0019 12 6 3.5784 -5.8624 0.0019 13 1 4.1264 -5.7484 -0.9334 14 6 3.1308 -7.3141 0.1649 15 6 4.3040 -8.2046 0.4791 16 6 4.1611 -9.5666 0.2426 17 6 5.1885 -10.4403 0.5306 18 6 6.3720 -9.9597 1.0598 19 6 6.5184 -8.6076 1.2912 20 6 5.4871 -7.7264 0.9958 21 6 5.7224 -6.2581 1.2471 22 7 4.4548 -5.5284 1.1367 23 6 4.1008 -4.5740 2.0526 24 1 3.5582 -3.6958 1.7352 25 6 4.4394 -4.7352 3.3891 26 7 4.4970 -3.6880 4.1843 27 14 4.8134 -6.4384 4.0590 28 1 6.2801 -6.6690 4.0342 29 1 4.3199 -6.5401 5.4560 30 1 4.1373 -7.4598 3.2196 31 1 -0.3633 0.0000 1.0277 32 1 -0.3632 0.8900 -0.5139 33 1 -0.3633 -0.8900 -0.5138 34 1 4.5298 -1.3157 0.0121 35 1 3.7478 -3.3354 0.0013 36 1 1.7582 -5.1314 -0.8883 37 1 1.7576 -5.1309 0.8917 38 1 2.6627 -7.6510 -0.7600 39 1 2.4057 -7.3768 0.9763 40 1 3.2372 -9.9442 -0.1701 41 1 5.0686 -11.4973 0.3440 42 1 7.1784 -10.6399 1.2907 43 1 7.4428 -8.2316 1.7042 44 1 6.1329 -6.1226 2.2477 45 1 6.4274 -5.8725 0.5106 46 1 4.7340 -3.8005 5.1182 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054049114.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:21:36 Heat of formation + Delta-G solvation = 77.067512 kcal Electronic energy + Delta-G solvation = -29913.380243 eV Core-core repulsion = 25997.528458 eV Total energy + Delta-G solvation = -3915.851784 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.32144 -41.02240 -39.97781 -38.10351 -35.37714 -34.52567 -33.85342 -33.37407 -32.15491 -31.41571 -30.44341 -28.88823 -27.32434 -26.75046 -24.81535 -23.92478 -22.98170 -22.51202 -21.34658 -20.75847 -20.45127 -19.52782 -18.42172 -17.63181 -17.25881 -16.94125 -16.79364 -16.44696 -16.14185 -15.90762 -15.68911 -15.18089 -15.15695 -14.93125 -14.65420 -14.56458 -14.25015 -13.96023 -13.86074 -13.85660 -13.68166 -13.57814 -13.03880 -12.92009 -12.84628 -12.73116 -12.53469 -12.23150 -12.10128 -11.94613 -11.83361 -11.53428 -11.37830 -10.72647 -10.62681 -10.45223 -9.92718 -9.64625 -9.50872 -9.35548 -8.74121 -8.09220 -5.45809 0.50656 0.52844 0.62640 1.16521 1.27542 1.42742 1.54328 1.86288 2.41895 2.51160 2.64729 2.89326 3.13599 3.27864 3.58608 3.80586 3.85468 3.94413 4.12514 4.19207 4.27028 4.34275 4.37586 4.43527 4.48633 4.57180 4.61343 4.67348 4.77266 4.81296 4.86289 4.91315 4.92592 4.96181 5.01150 5.05884 5.17598 5.23298 5.40012 5.53788 5.60919 5.63663 5.71386 5.83672 5.99764 6.19185 6.30392 6.34264 6.55426 6.83904 7.00041 7.49182 7.67272 8.14240 9.05816 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.015757 B = 0.003548 C = 0.003222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1776.531183 B = 7889.861372 C = 8686.820912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.117 3.883 3 N -0.323 5.323 4 N -0.448 5.448 5 H 0.459 0.541 6 C 0.134 3.866 7 C -0.316 4.316 8 C 0.587 3.413 9 O -0.589 6.589 10 N -0.696 5.696 11 C 0.142 3.858 12 C 0.162 3.838 13 H 0.075 0.925 14 C -0.093 4.093 15 C -0.077 4.077 16 C -0.130 4.130 17 C -0.128 4.128 18 C -0.129 4.129 19 C -0.143 4.143 20 C -0.109 4.109 21 C 0.168 3.832 22 N -0.610 5.610 23 C -0.244 4.244 24 H 0.109 0.891 25 C -0.015 4.015 26 N -0.943 5.943 27 Si 0.909 3.091 28 H -0.285 1.285 29 H -0.332 1.332 30 H -0.257 1.257 31 H 0.076 0.924 32 H 0.088 0.912 33 H 0.083 0.917 34 H 0.215 0.785 35 H 0.412 0.588 36 H 0.083 0.917 37 H 0.041 0.959 38 H 0.102 0.898 39 H 0.058 0.942 40 H 0.141 0.859 41 H 0.149 0.851 42 H 0.144 0.856 43 H 0.120 0.880 44 H 0.049 0.951 45 H 0.061 0.939 46 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.732 -3.685 -13.036 13.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.051 4.051 3 N -0.147 5.147 4 N -0.154 5.154 5 H 0.307 0.693 6 C -0.020 4.020 7 C -0.331 4.331 8 C 0.376 3.624 9 O -0.472 6.472 10 N -0.347 5.347 11 C 0.018 3.982 12 C 0.057 3.943 13 H 0.093 0.907 14 C -0.132 4.132 15 C -0.077 4.077 16 C -0.148 4.148 17 C -0.146 4.146 18 C -0.147 4.147 19 C -0.161 4.161 20 C -0.110 4.110 21 C 0.044 3.956 22 N -0.335 5.335 23 C -0.373 4.373 24 H 0.125 0.875 25 C -0.211 4.211 26 N -0.589 5.589 27 Si 0.741 3.259 28 H -0.213 1.213 29 H -0.262 1.262 30 H -0.181 1.181 31 H 0.095 0.905 32 H 0.107 0.893 33 H 0.102 0.898 34 H 0.231 0.769 35 H 0.250 0.750 36 H 0.101 0.899 37 H 0.059 0.941 38 H 0.120 0.880 39 H 0.077 0.923 40 H 0.159 0.841 41 H 0.166 0.834 42 H 0.162 0.838 43 H 0.138 0.862 44 H 0.067 0.933 45 H 0.079 0.921 46 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 1.956 -2.526 -12.916 13.305 hybrid contribution 1.222 -1.315 1.603 2.406 sum 3.178 -3.841 -11.313 12.363 Atomic orbital electron populations 1.20304 0.85202 1.04104 1.03517 1.22732 0.98146 0.88977 0.95195 1.77018 0.87434 1.22573 1.27693 1.46050 1.07523 1.05611 1.56168 0.69265 1.23568 0.99186 0.85856 0.93430 1.20355 0.93559 0.94051 1.25110 1.17454 0.85276 0.84415 0.75296 1.90652 1.17721 1.85005 1.53819 1.45856 1.10107 1.05617 1.73110 1.21206 0.95985 0.79983 1.00986 1.21013 0.90274 0.91804 0.91241 0.90711 1.20909 0.95131 0.94899 1.02258 1.19674 0.94536 0.94943 0.98582 1.21479 1.00152 0.92210 1.00916 1.21368 0.93269 1.00674 0.99283 1.21329 0.98910 0.94816 0.99640 1.21298 0.98841 0.94472 1.01515 1.20368 0.94681 0.96793 0.99143 1.20056 0.88876 0.87259 0.99441 1.44562 1.16539 1.44036 1.28347 1.19608 1.32793 0.98523 0.86419 0.87455 1.25933 1.00604 0.97524 0.97076 1.69909 1.53214 1.29735 1.05997 0.86423 0.77301 0.86256 0.75902 1.21319 1.26209 1.18106 0.90496 0.89293 0.89779 0.76877 0.75028 0.89900 0.94062 0.88013 0.92312 0.84145 0.83365 0.83811 0.86171 0.93305 0.92136 0.93642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.07 9.92 71.24 0.71 -1.37 16 2 C 0.12 3.79 7.26 43.52 0.32 4.10 16 3 N -0.32 -9.68 12.63 -46.67 -0.59 -10.27 16 4 N -0.45 -10.50 7.29 -56.32 -0.41 -10.91 16 5 H 0.46 6.96 8.96 -213.42 -1.91 5.05 16 6 C 0.13 3.45 11.52 84.27 0.97 4.42 16 7 C -0.32 -10.45 6.13 -20.15 -0.12 -10.57 16 8 C 0.59 21.89 7.80 86.66 0.68 22.57 16 9 O -0.59 -25.08 14.92 -4.06 -0.06 -25.15 16 10 N -0.70 -23.77 3.27 -466.38 -1.53 -25.29 16 11 C 0.14 4.81 4.56 86.38 0.39 5.20 16 12 C 0.16 5.22 3.02 44.78 0.14 5.35 16 13 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 14 C -0.09 -2.80 5.21 29.75 0.16 -2.65 16 15 C -0.08 -2.46 5.63 -19.85 -0.11 -2.58 16 16 C -0.13 -3.42 9.59 22.37 0.21 -3.20 16 17 C -0.13 -3.04 10.04 22.20 0.22 -2.81 16 18 C -0.13 -3.28 10.05 22.21 0.22 -3.06 16 19 C -0.14 -4.43 9.62 22.35 0.22 -4.21 16 20 C -0.11 -3.78 4.20 -19.82 -0.08 -3.86 16 21 C 0.17 6.44 5.13 85.63 0.44 6.88 16 22 N -0.61 -24.31 2.46 -680.39 -1.68 -25.99 16 23 C -0.24 -11.81 8.34 84.03 0.70 -11.11 16 24 H 0.11 5.34 4.85 -2.91 -0.01 5.32 16 25 C -0.02 -0.84 5.27 84.86 0.45 -0.39 16 26 N -0.94 -55.89 13.97 21.65 0.30 -55.58 16 27 Si 0.91 45.63 24.41 68.60 1.67 47.30 16 28 H -0.29 -13.86 6.70 99.48 0.67 -13.19 16 29 H -0.33 -17.87 7.11 99.48 0.71 -17.16 16 30 H -0.26 -12.66 6.22 99.48 0.62 -12.04 16 31 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 32 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 33 H 0.08 2.59 6.55 -2.39 -0.02 2.57 16 34 H 0.21 4.19 7.46 -2.91 -0.02 4.17 16 35 H 0.41 13.15 6.04 -92.71 -0.56 12.59 16 36 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 37 H 0.04 1.68 7.89 -2.39 -0.02 1.66 16 38 H 0.10 2.33 8.10 -2.39 -0.02 2.31 16 39 H 0.06 2.02 8.02 -2.39 -0.02 2.00 16 40 H 0.14 2.92 8.05 -2.91 -0.02 2.90 16 41 H 0.15 2.49 8.06 -2.91 -0.02 2.47 16 42 H 0.14 2.76 8.06 -2.91 -0.02 2.74 16 43 H 0.12 3.49 8.05 -2.91 -0.02 3.46 16 44 H 0.05 2.15 3.96 -2.39 -0.01 2.14 16 45 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 46 H 0.25 14.85 8.31 -92.71 -0.77 14.08 16 Total: -1.00 -72.99 365.37 1.65 -71.34 By element: Atomic # 1 Polarization: 33.40 SS G_CDS: -1.56 Total: 31.84 kcal Atomic # 6 Polarization: -2.78 SS G_CDS: 5.50 Total: 2.72 kcal Atomic # 7 Polarization: -124.15 SS G_CDS: -3.90 Total: -128.05 kcal Atomic # 8 Polarization: -25.08 SS G_CDS: -0.06 Total: -25.15 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 1.67 Total: 47.30 kcal Total: -72.99 1.65 -71.34 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054049114.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.404 kcal (2) G-P(sol) polarization free energy of solvation -72.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.337 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds