Wall clock time and date at job start Tue Mar 31 2020 23:48:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35557 * 125.82219 * 2 1 4 4 N 1.35414 * 107.15702 * 179.77418 * 3 2 1 5 5 H 0.96993 * 126.43482 * 180.22772 * 4 3 2 6 6 C 1.36659 * 107.11951 * 0.36235 * 4 3 2 7 7 C 1.47409 * 125.86426 * 179.89637 * 6 4 3 8 8 O 1.21611 * 119.99797 * 359.71818 * 7 6 4 9 9 N 1.34774 * 120.00454 * 179.71908 * 7 6 4 10 10 C 1.46497 * 120.00328 * 180.02562 * 9 7 6 11 11 C 1.52997 * 109.47287 * 179.97438 * 10 9 7 12 12 H 1.09001 * 109.76451 * 294.25841 * 11 10 9 13 13 C 1.52793 * 109.77310 * 173.46936 * 11 10 9 14 14 C 1.50596 * 110.84837 * 192.82928 * 13 11 10 15 15 C 1.38973 * 117.63439 * 199.98190 * 14 13 11 16 16 C 1.37912 * 120.58089 * 181.13667 * 15 14 13 17 17 C 1.38271 * 119.82472 * 0.02562 * 16 15 14 18 18 C 1.37956 * 119.72110 * 359.73962 * 17 16 15 19 19 C 1.37676 * 122.84481 * 20.62666 * 14 13 11 20 20 C 1.50809 * 122.33296 * 357.89172 * 19 14 13 21 21 N 1.46675 * 109.68969 * 11.94521 * 20 19 14 22 22 C 1.36941 * 121.31979 * 135.58850 * 21 20 19 23 23 H 1.07999 * 120.00087 * 208.15167 * 22 21 20 24 24 C 1.38811 * 119.99922 * 28.15123 * 22 21 20 25 25 N 1.31627 * 119.99716 * 10.84824 * 24 22 21 26 26 Si 1.86798 * 120.00424 * 190.84831 * 24 22 21 27 27 H 1.48500 * 109.47107 * 89.99836 * 26 24 22 28 28 H 1.48496 * 109.47030 * 210.00474 * 26 24 22 29 29 H 1.48508 * 109.46584 * 329.99916 * 26 24 22 30 30 N 1.31618 * 108.27625 * 359.63747 * 6 4 3 31 31 H 1.08996 * 109.47295 * 269.97136 * 1 2 3 32 32 H 1.09007 * 109.47408 * 29.97014 * 1 2 3 33 33 H 1.09004 * 109.47295 * 149.96986 * 1 2 3 34 34 H 1.07996 * 126.42488 * 359.97438 * 3 2 1 35 35 H 0.97000 * 119.99428 * 359.97438 * 9 7 6 36 36 H 1.09002 * 109.46946 * 59.99707 * 10 9 7 37 37 H 1.09003 * 109.47285 * 299.99730 * 10 9 7 38 38 H 1.08999 * 109.20209 * 72.47406 * 13 11 10 39 39 H 1.08997 * 109.19997 * 313.17693 * 13 11 10 40 40 H 1.07997 * 119.71114 * 1.11895 * 15 14 13 41 41 H 1.07996 * 120.08921 * 179.97438 * 16 15 14 42 42 H 1.07999 * 120.13678 * 179.76613 * 17 16 15 43 43 H 1.07992 * 119.74838 * 180.02562 * 18 17 16 44 44 H 1.08996 * 109.43772 * 132.01269 * 20 19 14 45 45 H 1.08997 * 109.43356 * 251.92569 * 20 19 14 46 46 H 0.97001 * 119.99365 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3004 1.0991 0.0000 4 7 3.5833 0.6658 0.0051 5 1 4.3788 1.2207 0.0095 6 6 3.5464 -0.7003 -0.0001 7 6 4.7173 -1.5958 0.0005 8 8 5.8401 -1.1286 0.0009 9 7 4.5436 -2.9323 0.0007 10 6 5.7073 -3.8223 0.0019 11 6 5.2362 -5.2779 0.0024 12 1 4.7211 -5.4983 0.9375 13 6 6.4362 -6.2097 -0.1598 14 6 5.9871 -7.6122 -0.4743 15 6 6.8858 -8.6453 -0.2372 16 6 6.5464 -9.9506 -0.5253 17 6 5.3017 -10.2366 -1.0552 18 6 4.4056 -9.2136 -1.2871 19 6 4.7440 -7.8999 -0.9916 20 6 3.7085 -6.8329 -1.2435 21 7 4.3274 -5.5077 -1.1328 22 6 4.0699 -4.5230 -2.0489 23 1 4.8102 -3.7618 -2.2461 24 6 2.8571 -4.5031 -2.7240 25 7 1.8764 -5.2919 -2.3387 26 14 2.6169 -3.3570 -4.1794 27 1 3.0177 -4.0526 -5.4287 28 1 1.1879 -2.9631 -4.2686 29 1 3.4543 -2.1440 -3.9976 30 7 2.2860 -1.0792 -0.0002 31 1 -0.3634 -0.0005 1.0276 32 1 -0.3634 0.8903 -0.5134 33 1 -0.3634 -0.8897 -0.5143 34 1 1.9711 2.1277 -0.0004 35 1 3.6481 -3.3049 0.0007 36 1 6.3073 -3.6346 0.8923 37 1 6.3089 -3.6351 -0.8877 38 1 7.0123 -6.2167 0.7654 39 1 7.0663 -5.8447 -0.9709 40 1 7.8588 -8.4241 0.1760 41 1 7.2512 -10.7472 -0.3382 42 1 5.0320 -11.2565 -1.2862 43 1 3.4332 -9.4365 -1.7006 44 1 3.2952 -6.9576 -2.2443 45 1 2.9096 -6.9219 -0.5075 46 1 1.0289 -5.2777 -2.8103 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054055054.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:48:25 Heat of formation + Delta-G solvation = 70.975085 kcal Electronic energy + Delta-G solvation = -29810.841491 eV Core-core repulsion = 25894.725519 eV Total energy + Delta-G solvation = -3916.115972 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.00749 -39.43929 -38.70098 -36.53428 -33.87079 -33.03407 -32.83046 -31.43257 -31.12682 -30.08924 -28.91054 -27.07959 -25.60949 -25.41074 -23.03804 -22.69495 -21.52329 -21.00720 -20.13306 -19.93342 -19.07931 -18.25043 -16.53556 -16.22320 -15.86588 -15.56564 -15.36136 -15.07543 -14.54383 -14.30089 -14.20207 -13.92222 -13.77724 -13.59362 -13.14637 -12.91172 -12.78483 -12.63709 -12.57891 -12.43171 -12.13297 -12.06372 -11.67327 -11.53023 -11.10405 -10.85494 -10.80895 -10.69254 -10.47615 -10.16557 -9.97003 -9.94422 -9.87352 -9.85262 -9.61309 -8.73307 -8.46348 -8.21983 -8.11731 -7.82088 -6.75287 -5.85144 -3.28955 1.65811 1.88856 1.96753 2.81041 2.91654 3.37263 3.44515 3.45881 3.80583 3.95915 4.31059 4.44340 4.62850 5.08298 5.16716 5.24276 5.32297 5.33050 5.34672 5.40395 5.48936 5.59977 5.73083 5.82991 5.85127 5.89243 5.96736 6.02855 6.05986 6.11753 6.16702 6.20866 6.30346 6.33813 6.57170 6.64493 6.79419 6.81862 6.96312 6.98890 7.03294 7.16814 7.23492 7.31624 7.53069 7.67162 7.78384 7.95403 8.29841 8.33166 8.72015 9.13705 9.73458 10.31128 11.24241 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013929 B = 0.003712 C = 0.003255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2009.670264 B = 7541.990106 C = 8599.409571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.002 4.002 3 C -0.038 4.038 4 N -0.530 5.530 5 H 0.426 0.574 6 C 0.161 3.839 7 C 0.596 3.404 8 O -0.569 6.569 9 N -0.661 5.661 10 C 0.136 3.864 11 C 0.157 3.843 12 H 0.044 0.956 13 C -0.090 4.090 14 C -0.068 4.068 15 C -0.128 4.128 16 C -0.141 4.141 17 C -0.130 4.130 18 C -0.123 4.123 19 C -0.076 4.076 20 C 0.208 3.792 21 N -0.587 5.587 22 C -0.251 4.251 23 H 0.069 0.931 24 C 0.018 3.982 25 N -0.899 5.899 26 Si 0.898 3.102 27 H -0.289 1.289 28 H -0.289 1.289 29 H -0.282 1.282 30 N -0.425 5.425 31 H 0.067 0.933 32 H 0.066 0.934 33 H 0.075 0.925 34 H 0.181 0.819 35 H 0.430 0.570 36 H 0.062 0.938 37 H 0.070 0.930 38 H 0.063 0.937 39 H 0.074 0.926 40 H 0.111 0.889 41 H 0.110 0.890 42 H 0.112 0.888 43 H 0.117 0.883 44 H 0.097 0.903 45 H 0.043 0.957 46 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.254 3.689 6.099 7.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.137 4.137 3 C -0.177 4.177 4 N -0.132 5.132 5 H 0.265 0.735 6 C -0.101 4.101 7 C 0.379 3.621 8 O -0.450 6.450 9 N -0.311 5.311 10 C 0.012 3.988 11 C 0.050 3.950 12 H 0.061 0.939 13 C -0.129 4.129 14 C -0.068 4.068 15 C -0.146 4.146 16 C -0.159 4.159 17 C -0.149 4.149 18 C -0.142 4.142 19 C -0.078 4.078 20 C 0.083 3.917 21 N -0.311 5.311 22 C -0.380 4.380 23 H 0.087 0.913 24 C -0.181 4.181 25 N -0.542 5.542 26 Si 0.729 3.271 27 H -0.216 1.216 28 H -0.215 1.215 29 H -0.207 1.207 30 N -0.148 5.148 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.093 0.907 34 H 0.198 0.802 35 H 0.270 0.730 36 H 0.080 0.920 37 H 0.089 0.911 38 H 0.082 0.918 39 H 0.092 0.908 40 H 0.129 0.871 41 H 0.128 0.872 42 H 0.130 0.870 43 H 0.135 0.865 44 H 0.115 0.885 45 H 0.061 0.939 46 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 2.597 3.136 6.019 7.267 hybrid contribution 0.058 1.436 -0.995 1.748 sum 2.655 4.572 5.024 7.293 Atomic orbital electron populations 1.20044 0.87404 1.02933 1.02160 1.20920 0.96997 0.88098 1.07636 1.22593 0.83267 1.00690 1.11124 1.42887 1.08851 1.07695 1.53756 0.73490 1.22831 0.94090 0.82013 1.11199 1.16448 0.85132 0.82561 0.77932 1.90765 1.23754 1.76528 1.53938 1.45668 1.12588 1.03596 1.69234 1.21357 0.87555 0.88682 1.01217 1.20717 0.91171 0.90898 0.92232 0.93874 1.20875 0.98821 0.92434 1.00781 1.19472 0.93693 0.94796 0.98870 1.21116 0.98959 0.92862 1.01630 1.20842 0.96905 0.96210 1.01962 1.20951 0.94502 0.98542 1.00867 1.21118 0.99588 0.92490 1.01004 1.21041 0.95815 0.95995 0.94905 1.19787 0.89407 0.80263 1.02293 1.43997 1.52478 1.09318 1.25281 1.19025 0.97769 1.06130 1.15108 0.91287 1.24960 0.95038 0.98372 0.99772 1.69942 1.03202 1.40594 1.40476 0.86344 0.77178 0.80726 0.82887 1.21625 1.21542 1.20713 1.70276 0.99117 1.30363 1.15024 0.91420 0.91507 0.90651 0.80165 0.72991 0.92003 0.91132 0.91849 0.90769 0.87117 0.87174 0.87035 0.86464 0.88526 0.93899 0.93432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.83 10.42 36.01 0.38 -0.46 16 2 C 0.00 -0.03 7.07 -83.00 -0.59 -0.62 16 3 C -0.04 -0.48 11.91 -16.93 -0.20 -0.69 16 4 N -0.53 -7.56 6.14 -10.78 -0.07 -7.62 16 5 H 0.43 4.92 8.96 -40.82 -0.37 4.55 16 6 C 0.16 2.97 7.95 -154.53 -1.23 1.74 16 7 C 0.60 11.88 7.81 -12.53 -0.10 11.78 16 8 O -0.57 -11.88 17.09 5.27 0.09 -11.79 16 9 N -0.66 -13.24 4.00 -61.39 -0.25 -13.49 16 10 C 0.14 2.50 4.45 -4.04 -0.02 2.49 16 11 C 0.16 2.98 3.02 -67.64 -0.20 2.78 16 12 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 13 C -0.09 -1.51 5.21 -28.04 -0.15 -1.66 16 14 C -0.07 -1.22 5.76 -104.61 -0.60 -1.83 16 15 C -0.13 -2.00 9.59 -39.43 -0.38 -2.38 16 16 C -0.14 -2.08 10.05 -39.69 -0.40 -2.48 16 17 C -0.13 -2.00 10.05 -39.67 -0.40 -2.39 16 18 C -0.12 -2.16 9.62 -39.46 -0.38 -2.54 16 19 C -0.08 -1.49 5.82 -104.55 -0.61 -2.10 16 20 C 0.21 4.67 4.80 -5.05 -0.02 4.64 16 21 N -0.59 -13.27 2.86 -166.40 -0.48 -13.75 16 22 C -0.25 -6.28 6.95 -15.06 -0.10 -6.38 16 23 H 0.07 1.78 6.18 -52.49 -0.32 1.46 16 24 C 0.02 0.48 5.08 -17.43 -0.09 0.39 16 25 N -0.90 -24.18 11.06 55.49 0.61 -23.56 16 26 Si 0.90 21.88 29.57 -169.99 -5.03 16.85 16 27 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 28 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 29 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 30 N -0.43 -8.20 10.89 -7.50 -0.08 -8.28 16 31 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.18 1.44 8.06 -52.49 -0.42 1.01 16 35 H 0.43 9.43 7.02 -40.82 -0.29 9.14 16 36 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.07 1.39 7.32 -51.93 -0.38 1.01 16 38 H 0.06 0.90 8.10 -51.93 -0.42 0.48 16 39 H 0.07 1.28 8.01 -51.93 -0.42 0.86 16 40 H 0.11 1.47 8.05 -52.49 -0.42 1.05 16 41 H 0.11 1.32 8.06 -52.49 -0.42 0.90 16 42 H 0.11 1.41 8.06 -52.49 -0.42 0.99 16 43 H 0.12 1.93 8.05 -52.49 -0.42 1.51 16 44 H 0.10 2.43 6.46 -51.93 -0.34 2.10 16 45 H 0.04 1.03 8.14 -51.93 -0.42 0.61 16 46 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 LS Contribution 378.02 15.07 5.70 5.70 Total: -1.00 -30.47 378.02 -10.90 -41.37 By element: Atomic # 1 Polarization: 20.59 SS G_CDS: -6.31 Total: 14.28 kcal Atomic # 6 Polarization: 5.39 SS G_CDS: -5.09 Total: 0.30 kcal Atomic # 7 Polarization: -66.45 SS G_CDS: -0.25 Total: -66.70 kcal Atomic # 8 Polarization: -11.88 SS G_CDS: 0.09 Total: -11.79 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.03 Total: 16.85 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -30.47 -10.90 -41.37 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054055054.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.345 kcal (2) G-P(sol) polarization free energy of solvation -30.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.370 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds