Wall clock time and date at job start Tue Mar 31 2020 23:48:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35557 * 125.82219 * 2 1 4 4 N 1.35414 * 107.15702 * 179.77418 * 3 2 1 5 5 H 0.96993 * 126.43482 * 180.22772 * 4 3 2 6 6 C 1.36659 * 107.11951 * 0.36235 * 4 3 2 7 7 C 1.47409 * 125.86426 * 179.89637 * 6 4 3 8 8 O 1.21611 * 119.99797 * 359.71818 * 7 6 4 9 9 N 1.34774 * 120.00454 * 179.71908 * 7 6 4 10 10 C 1.46497 * 120.00328 * 180.02562 * 9 7 6 11 11 C 1.52997 * 109.47287 * 179.97438 * 10 9 7 12 12 H 1.09001 * 109.76451 * 294.25841 * 11 10 9 13 13 C 1.52793 * 109.77310 * 173.46936 * 11 10 9 14 14 C 1.50596 * 110.84837 * 192.82928 * 13 11 10 15 15 C 1.38973 * 117.63439 * 199.98190 * 14 13 11 16 16 C 1.37912 * 120.58089 * 181.13667 * 15 14 13 17 17 C 1.38271 * 119.82472 * 0.02562 * 16 15 14 18 18 C 1.37956 * 119.72110 * 359.73962 * 17 16 15 19 19 C 1.37676 * 122.84481 * 20.62666 * 14 13 11 20 20 C 1.50809 * 122.33296 * 357.89172 * 19 14 13 21 21 N 1.46675 * 109.68969 * 11.94521 * 20 19 14 22 22 C 1.36941 * 121.31979 * 135.58850 * 21 20 19 23 23 H 1.07999 * 120.00087 * 208.15167 * 22 21 20 24 24 C 1.38811 * 119.99922 * 28.15123 * 22 21 20 25 25 N 1.31627 * 119.99716 * 10.84824 * 24 22 21 26 26 Si 1.86798 * 120.00424 * 190.84831 * 24 22 21 27 27 H 1.48500 * 109.47107 * 89.99836 * 26 24 22 28 28 H 1.48496 * 109.47030 * 210.00474 * 26 24 22 29 29 H 1.48508 * 109.46584 * 329.99916 * 26 24 22 30 30 N 1.31618 * 108.27625 * 359.63747 * 6 4 3 31 31 H 1.08996 * 109.47295 * 269.97136 * 1 2 3 32 32 H 1.09007 * 109.47408 * 29.97014 * 1 2 3 33 33 H 1.09004 * 109.47295 * 149.96986 * 1 2 3 34 34 H 1.07996 * 126.42488 * 359.97438 * 3 2 1 35 35 H 0.97000 * 119.99428 * 359.97438 * 9 7 6 36 36 H 1.09002 * 109.46946 * 59.99707 * 10 9 7 37 37 H 1.09003 * 109.47285 * 299.99730 * 10 9 7 38 38 H 1.08999 * 109.20209 * 72.47406 * 13 11 10 39 39 H 1.08997 * 109.19997 * 313.17693 * 13 11 10 40 40 H 1.07997 * 119.71114 * 1.11895 * 15 14 13 41 41 H 1.07996 * 120.08921 * 179.97438 * 16 15 14 42 42 H 1.07999 * 120.13678 * 179.76613 * 17 16 15 43 43 H 1.07992 * 119.74838 * 180.02562 * 18 17 16 44 44 H 1.08996 * 109.43772 * 132.01269 * 20 19 14 45 45 H 1.08997 * 109.43356 * 251.92569 * 20 19 14 46 46 H 0.97001 * 119.99365 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3004 1.0991 0.0000 4 7 3.5833 0.6658 0.0051 5 1 4.3788 1.2207 0.0095 6 6 3.5464 -0.7003 -0.0001 7 6 4.7173 -1.5958 0.0005 8 8 5.8401 -1.1286 0.0009 9 7 4.5436 -2.9323 0.0007 10 6 5.7073 -3.8223 0.0019 11 6 5.2362 -5.2779 0.0024 12 1 4.7211 -5.4983 0.9375 13 6 6.4362 -6.2097 -0.1598 14 6 5.9871 -7.6122 -0.4743 15 6 6.8858 -8.6453 -0.2372 16 6 6.5464 -9.9506 -0.5253 17 6 5.3017 -10.2366 -1.0552 18 6 4.4056 -9.2136 -1.2871 19 6 4.7440 -7.8999 -0.9916 20 6 3.7085 -6.8329 -1.2435 21 7 4.3274 -5.5077 -1.1328 22 6 4.0699 -4.5230 -2.0489 23 1 4.8102 -3.7618 -2.2461 24 6 2.8571 -4.5031 -2.7240 25 7 1.8764 -5.2919 -2.3387 26 14 2.6169 -3.3570 -4.1794 27 1 3.0177 -4.0526 -5.4287 28 1 1.1879 -2.9631 -4.2686 29 1 3.4543 -2.1440 -3.9976 30 7 2.2860 -1.0792 -0.0002 31 1 -0.3634 -0.0005 1.0276 32 1 -0.3634 0.8903 -0.5134 33 1 -0.3634 -0.8897 -0.5143 34 1 1.9711 2.1277 -0.0004 35 1 3.6481 -3.3049 0.0007 36 1 6.3073 -3.6346 0.8923 37 1 6.3089 -3.6351 -0.8877 38 1 7.0123 -6.2167 0.7654 39 1 7.0663 -5.8447 -0.9709 40 1 7.8588 -8.4241 0.1760 41 1 7.2512 -10.7472 -0.3382 42 1 5.0320 -11.2565 -1.2862 43 1 3.4332 -9.4365 -1.7006 44 1 3.2952 -6.9576 -2.2443 45 1 2.9096 -6.9219 -0.5075 46 1 1.0289 -5.2777 -2.8103 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054055054.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:48:24 Heat of formation + Delta-G solvation = 52.567183 kcal Electronic energy + Delta-G solvation = -29811.639717 eV Core-core repulsion = 25894.725519 eV Total energy + Delta-G solvation = -3916.914198 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.21779 -40.89857 -40.16549 -38.08271 -35.46638 -34.56620 -34.12982 -32.97315 -32.39590 -31.56785 -30.44636 -28.26307 -27.34956 -26.76814 -24.56840 -24.21751 -22.87293 -22.44821 -21.47167 -21.17364 -20.61917 -19.64540 -18.17429 -17.73120 -17.35561 -17.01860 -16.73451 -16.50844 -16.03139 -15.98432 -15.65269 -15.24842 -15.17267 -14.99451 -14.67287 -14.55516 -14.03924 -13.95406 -13.77451 -13.70126 -13.53570 -13.27015 -13.11607 -13.06000 -12.78858 -12.62883 -12.54922 -12.27646 -12.16124 -11.87761 -11.59107 -11.45563 -11.23634 -11.14890 -11.11106 -10.65013 -10.00848 -9.51453 -9.33368 -9.23927 -8.64188 -7.86294 -5.28898 0.37435 0.61134 0.65050 1.37201 1.40522 1.45116 1.57915 1.68865 2.40164 2.46574 2.66964 3.00744 3.31107 3.36021 3.53889 3.83401 4.00306 4.12587 4.13815 4.23961 4.26424 4.38576 4.40992 4.41354 4.50948 4.63516 4.73815 4.82370 4.85414 4.92552 4.93678 4.93963 4.99842 5.11729 5.21446 5.24443 5.29356 5.41343 5.51580 5.54266 5.68682 5.70413 5.72487 5.77078 6.04358 6.23788 6.30002 6.37016 6.51539 6.92218 7.15958 7.17174 7.82205 8.37519 9.21363 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013929 B = 0.003712 C = 0.003255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2009.670264 B = 7541.990106 C = 8599.409571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C -0.039 4.039 3 C 0.004 3.996 4 N -0.516 5.516 5 H 0.439 0.561 6 C 0.116 3.884 7 C 0.595 3.405 8 O -0.586 6.586 9 N -0.669 5.669 10 C 0.139 3.861 11 C 0.157 3.843 12 H 0.041 0.959 13 C -0.082 4.082 14 C -0.084 4.084 15 C -0.126 4.126 16 C -0.131 4.131 17 C -0.127 4.127 18 C -0.138 4.138 19 C -0.108 4.108 20 C 0.224 3.776 21 N -0.599 5.599 22 C -0.231 4.231 23 H 0.061 0.939 24 C -0.025 4.025 25 N -0.921 5.921 26 Si 0.940 3.060 27 H -0.289 1.289 28 H -0.295 1.295 29 H -0.288 1.288 30 N -0.464 5.464 31 H 0.081 0.919 32 H 0.100 0.900 33 H 0.047 0.953 34 H 0.238 0.762 35 H 0.419 0.581 36 H 0.087 0.913 37 H 0.057 0.943 38 H 0.099 0.901 39 H 0.071 0.929 40 H 0.142 0.858 41 H 0.149 0.851 42 H 0.142 0.858 43 H 0.113 0.887 44 H 0.060 0.940 45 H 0.012 0.988 46 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.079 4.133 7.136 9.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.174 4.174 3 C -0.135 4.135 4 N -0.119 5.119 5 H 0.280 0.720 6 C -0.144 4.144 7 C 0.379 3.621 8 O -0.468 6.468 9 N -0.318 5.318 10 C 0.016 3.984 11 C 0.051 3.949 12 H 0.059 0.941 13 C -0.121 4.121 14 C -0.084 4.084 15 C -0.144 4.144 16 C -0.149 4.149 17 C -0.145 4.145 18 C -0.157 4.157 19 C -0.109 4.109 20 C 0.099 3.901 21 N -0.323 5.323 22 C -0.361 4.361 23 H 0.078 0.922 24 C -0.221 4.221 25 N -0.567 5.567 26 Si 0.772 3.228 27 H -0.217 1.217 28 H -0.221 1.221 29 H -0.214 1.214 30 N -0.187 5.187 31 H 0.100 0.900 32 H 0.119 0.881 33 H 0.066 0.934 34 H 0.254 0.746 35 H 0.257 0.743 36 H 0.105 0.895 37 H 0.075 0.925 38 H 0.117 0.883 39 H 0.090 0.910 40 H 0.160 0.840 41 H 0.166 0.834 42 H 0.160 0.840 43 H 0.131 0.869 44 H 0.078 0.922 45 H 0.030 0.970 46 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 4.481 3.572 7.066 9.097 hybrid contribution -0.501 1.320 -1.252 1.887 sum 3.980 4.892 5.814 8.578 Atomic orbital electron populations 1.20119 0.85580 1.03236 1.03183 1.21609 0.98520 0.88226 1.09012 1.23449 0.81715 1.02263 1.06118 1.42931 1.10209 1.06417 1.52360 0.71955 1.22436 0.93393 0.83508 1.15067 1.16676 0.85636 0.82572 0.77193 1.90727 1.24444 1.76716 1.54905 1.45730 1.12237 1.04156 1.69657 1.21398 0.87213 0.88097 1.01690 1.20869 0.91374 0.92019 0.90629 0.94124 1.20810 0.97597 0.91305 1.02408 1.19659 0.93518 0.96031 0.99178 1.21435 0.99579 0.92547 1.00820 1.21330 0.96962 0.96905 0.99704 1.21300 0.94249 0.99228 0.99733 1.21218 1.00343 0.92523 1.01572 1.20769 0.96286 0.95765 0.98076 1.19320 0.89941 0.81582 0.99296 1.44137 1.52897 1.09037 1.26206 1.18999 0.96852 1.05622 1.14608 0.92181 1.25376 0.95379 0.99747 1.01645 1.70064 1.03230 1.42054 1.41380 0.85680 0.76379 0.79355 0.81417 1.21661 1.22128 1.21431 1.70185 1.00111 1.32881 1.15570 0.90036 0.88124 0.93374 0.74556 0.74330 0.89469 0.92483 0.88313 0.91045 0.84016 0.83351 0.84009 0.86871 0.92179 0.97036 0.94236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.49 10.42 71.24 0.74 -0.74 16 2 C -0.04 -1.19 7.07 41.75 0.30 -0.89 16 3 C 0.00 0.10 11.91 83.52 0.99 1.09 16 4 N -0.52 -13.90 6.14 -188.02 -1.16 -15.05 16 5 H 0.44 9.29 8.96 -92.71 -0.83 8.46 16 6 C 0.12 4.33 7.95 136.28 1.08 5.41 16 7 C 0.59 24.31 7.81 86.66 0.68 24.99 16 8 O -0.59 -24.70 17.09 -4.07 -0.07 -24.77 16 9 N -0.67 -27.90 4.00 -466.39 -1.87 -29.77 16 10 C 0.14 5.22 4.45 86.38 0.38 5.60 16 11 C 0.16 6.07 3.02 44.78 0.14 6.21 16 12 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 13 C -0.08 -2.67 5.21 29.75 0.16 -2.51 16 14 C -0.08 -2.90 5.76 -19.85 -0.11 -3.02 16 15 C -0.13 -3.50 9.59 22.37 0.21 -3.29 16 16 C -0.13 -3.32 10.05 22.20 0.22 -3.10 16 17 C -0.13 -3.55 10.05 22.21 0.22 -3.33 16 18 C -0.14 -4.85 9.62 22.35 0.22 -4.63 16 19 C -0.11 -4.30 5.82 -19.82 -0.12 -4.42 16 20 C 0.22 10.75 4.80 85.63 0.41 11.16 16 21 N -0.60 -28.39 2.86 -680.38 -1.94 -30.33 16 22 C -0.23 -12.08 6.95 84.03 0.58 -11.49 16 23 H 0.06 3.24 6.18 -2.91 -0.02 3.22 16 24 C -0.02 -1.35 5.08 84.86 0.43 -0.92 16 25 N -0.92 -52.76 11.06 21.65 0.24 -52.52 16 26 Si 0.94 46.90 29.57 68.60 2.03 48.93 16 27 H -0.29 -14.26 7.11 99.48 0.71 -13.55 16 28 H -0.29 -14.81 7.11 99.48 0.71 -14.11 16 29 H -0.29 -14.53 7.11 99.48 0.71 -13.82 16 30 N -0.46 -18.31 10.89 -177.64 -1.94 -20.25 16 31 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.10 1.61 8.14 -2.38 -0.02 1.59 16 33 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.24 2.37 8.06 -2.91 -0.02 2.35 16 35 H 0.42 19.48 7.02 -92.71 -0.65 18.83 16 36 H 0.09 2.80 8.14 -2.39 -0.02 2.78 16 37 H 0.06 2.28 7.32 -2.39 -0.02 2.27 16 38 H 0.10 2.50 8.10 -2.39 -0.02 2.48 16 39 H 0.07 2.37 8.01 -2.39 -0.02 2.35 16 40 H 0.14 3.05 8.05 -2.91 -0.02 3.03 16 41 H 0.15 2.67 8.06 -2.91 -0.02 2.65 16 42 H 0.14 3.07 8.06 -2.91 -0.02 3.04 16 43 H 0.11 3.91 8.05 -2.91 -0.02 3.89 16 44 H 0.06 3.27 6.46 -2.39 -0.02 3.25 16 45 H 0.01 0.62 8.14 -2.39 -0.02 0.60 16 46 H 0.25 14.07 8.31 -92.71 -0.77 13.30 16 Total: -1.00 -71.86 378.02 1.38 -70.48 By element: Atomic # 1 Polarization: 37.62 SS G_CDS: -0.45 Total: 37.16 kcal Atomic # 6 Polarization: 9.58 SS G_CDS: 6.54 Total: 16.12 kcal Atomic # 7 Polarization: -141.26 SS G_CDS: -6.66 Total: -147.92 kcal Atomic # 8 Polarization: -24.70 SS G_CDS: -0.07 Total: -24.77 kcal Atomic # 14 Polarization: 46.90 SS G_CDS: 2.03 Total: 48.93 kcal Total: -71.86 1.38 -70.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054055054.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.044 kcal (2) G-P(sol) polarization free energy of solvation -71.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.476 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds