Wall clock time and date at job start Tue Mar 31 2020 23:48:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.33319 * 126.10686 * 2 1 4 4 C 1.30856 * 109.68420 * 180.02562 * 3 2 1 5 5 N 1.34500 * 109.16464 * 359.73153 * 4 3 2 6 6 H 0.97002 * 126.47317 * 180.29406 * 5 4 3 7 7 C 1.36663 * 126.10608 * 180.02562 * 2 1 3 8 8 C 1.46765 * 126.84538 * 359.97377 * 7 2 1 9 9 O 1.21685 * 119.99780 * 0.02562 * 8 7 2 10 10 N 1.34774 * 120.00029 * 179.97438 * 8 7 2 11 11 C 1.46500 * 119.99986 * 179.97438 * 10 8 7 12 12 C 1.53002 * 109.46936 * 180.02562 * 11 10 8 13 13 H 1.09003 * 109.76445 * 294.25768 * 12 11 10 14 14 C 1.52787 * 109.81354 * 173.50011 * 12 11 10 15 15 C 1.50596 * 110.84945 * 192.80060 * 14 12 11 16 16 C 1.38980 * 117.63619 * 199.97989 * 15 14 12 17 17 C 1.37915 * 120.57631 * 181.14076 * 16 15 14 18 18 C 1.38258 * 119.82817 * 0.02562 * 17 16 15 19 19 C 1.37962 * 119.72308 * 359.74906 * 18 17 16 20 20 C 1.37677 * 122.84144 * 20.63001 * 15 14 12 21 21 C 1.50804 * 122.33227 * 357.88976 * 20 15 14 22 22 N 1.46676 * 109.69296 * 11.94458 * 21 20 15 23 23 C 1.36940 * 121.32012 * 135.58865 * 22 21 20 24 24 H 1.07997 * 120.00298 * 208.26118 * 23 22 21 25 25 C 1.38811 * 119.99930 * 28.25686 * 23 22 21 26 26 N 1.31627 * 119.99716 * 10.71780 * 25 23 22 27 27 Si 1.86798 * 120.00424 * 190.71787 * 25 23 22 28 28 H 1.48500 * 109.47107 * 89.99836 * 27 25 23 29 29 H 1.48496 * 109.47030 * 210.00474 * 27 25 23 30 30 H 1.48508 * 109.46584 * 329.99916 * 27 25 23 31 31 H 1.09003 * 109.46609 * 269.97522 * 1 2 3 32 32 H 1.09002 * 109.46894 * 29.96954 * 1 2 3 33 33 H 1.08998 * 109.47162 * 149.97365 * 1 2 3 34 34 H 1.08005 * 125.41735 * 179.97438 * 4 3 2 35 35 H 0.96997 * 120.00201 * 0.02562 * 10 8 7 36 36 H 1.09000 * 109.46773 * 60.00242 * 11 10 8 37 37 H 1.08998 * 109.47282 * 300.00267 * 11 10 8 38 38 H 1.08999 * 109.20802 * 72.44388 * 14 12 11 39 39 H 1.09003 * 109.19980 * 313.15150 * 14 12 11 40 40 H 1.07992 * 119.70997 * 1.11626 * 16 15 14 41 41 H 1.07996 * 120.08391 * 179.97438 * 17 16 15 42 42 H 1.08003 * 120.14015 * 179.76097 * 18 17 16 43 43 H 1.08001 * 119.74977 * 180.02562 * 19 18 17 44 44 H 1.08998 * 109.43793 * 132.01865 * 21 20 15 45 45 H 1.09009 * 109.43514 * 251.92686 * 21 20 15 46 46 H 0.97001 * 119.99365 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2927 1.0771 0.0000 4 6 3.5479 0.7072 -0.0006 5 7 3.6122 -0.6363 0.0050 6 1 4.4189 -1.1749 0.0099 7 6 2.3124 -1.1041 -0.0005 8 6 1.8821 -2.5073 -0.0006 9 8 0.6962 -2.7800 -0.0007 10 7 2.8004 -3.4937 -0.0016 11 6 2.3709 -4.8944 -0.0011 12 6 3.6005 -5.8048 -0.0019 13 1 4.1469 -5.6856 -0.9375 14 6 3.1669 -7.2608 0.1613 15 6 4.3487 -8.1400 0.4748 16 6 4.2186 -9.5034 0.2383 17 6 5.2546 -10.3672 0.5257 18 6 6.4337 -9.8753 1.0542 19 6 6.5674 -8.5218 1.2857 20 6 5.5275 -7.6505 0.9907 21 6 5.7489 -6.1801 1.2419 22 7 4.4744 -5.4625 1.1323 23 6 4.1118 -4.5115 2.0484 24 1 3.0670 -4.3244 2.2480 25 6 5.0871 -3.7879 2.7207 26 7 6.3433 -3.8595 2.3342 27 14 4.6171 -2.7126 4.1740 28 1 4.6973 -3.5085 5.4252 29 1 5.5499 -1.5604 4.2594 30 1 3.2300 -2.2140 3.9926 31 1 -0.3633 -0.0004 1.0277 32 1 -0.3633 0.8903 -0.5134 33 1 -0.3633 -0.8897 -0.5142 34 1 4.3971 1.3745 -0.0011 35 1 3.7457 -3.2764 -0.0019 36 1 1.7721 -5.0910 -0.8905 37 1 1.7741 -5.0911 0.8895 38 1 2.7014 -7.6021 -0.7633 39 1 2.4429 -7.3304 0.9732 40 1 3.2982 -9.8897 -0.1737 41 1 5.1448 -11.4253 0.3392 42 1 7.2468 -10.5478 1.2847 43 1 7.4884 -8.1371 1.6981 44 1 6.1588 -6.0407 2.2423 45 1 6.4498 -5.7877 0.5050 46 1 7.0248 -3.3536 2.8038 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054062014.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:48:31 Heat of formation + Delta-G solvation = 66.184742 kcal Electronic energy + Delta-G solvation = -29980.905619 eV Core-core repulsion = 26064.581923 eV Total energy + Delta-G solvation = -3916.323697 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.94748 -39.53562 -38.71547 -36.64512 -34.02828 -33.17731 -32.72084 -31.52577 -30.98944 -30.23175 -29.04799 -27.14330 -25.74921 -25.36456 -23.00097 -22.63515 -21.62804 -21.37329 -20.50763 -19.52017 -19.14392 -18.39389 -16.58742 -16.33682 -15.74442 -15.54606 -15.38636 -15.13085 -14.67573 -14.42509 -14.31051 -14.13717 -13.81041 -13.63096 -13.20012 -12.98655 -12.72073 -12.68382 -12.55812 -12.53589 -12.24732 -11.88548 -11.77069 -11.66547 -11.21814 -11.02706 -10.95507 -10.81383 -10.62394 -10.29837 -10.19305 -10.11950 -9.84779 -9.78415 -9.45652 -8.92285 -8.55677 -8.31351 -8.14342 -7.93706 -6.96332 -6.07133 -3.52227 1.61329 1.79600 1.87057 3.06640 3.17169 3.20447 3.28259 3.33259 3.64308 3.77731 4.21484 4.24442 4.63860 5.02331 5.09040 5.13279 5.18380 5.29019 5.33484 5.39838 5.47519 5.50252 5.62458 5.78737 5.84982 5.94022 5.96233 5.99046 6.03889 6.10774 6.13841 6.20520 6.26050 6.30485 6.47368 6.54374 6.69891 6.81232 6.86965 6.87770 6.95921 7.04544 7.08990 7.40734 7.42807 7.54746 7.58992 7.97946 8.11355 8.17931 8.66075 8.92852 9.51846 10.10548 11.00775 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014270 B = 0.003761 C = 0.003240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1961.674325 B = 7442.452738 C = 8640.104824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.080 3.920 3 N -0.504 5.504 4 C 0.209 3.791 5 N -0.546 5.546 6 H 0.429 0.571 7 C -0.076 4.076 8 C 0.588 3.412 9 O -0.546 6.546 10 N -0.691 5.691 11 C 0.137 3.863 12 C 0.157 3.843 13 H 0.042 0.958 14 C -0.090 4.090 15 C -0.068 4.068 16 C -0.127 4.127 17 C -0.140 4.140 18 C -0.130 4.130 19 C -0.123 4.123 20 C -0.078 4.078 21 C 0.207 3.793 22 N -0.589 5.589 23 C -0.245 4.245 24 H 0.072 0.928 25 C 0.008 3.992 26 N -0.905 5.905 27 Si 0.892 3.108 28 H -0.285 1.285 29 H -0.290 1.290 30 H -0.277 1.277 31 H 0.070 0.930 32 H 0.065 0.935 33 H 0.088 0.912 34 H 0.212 0.788 35 H 0.410 0.590 36 H 0.061 0.939 37 H 0.069 0.931 38 H 0.064 0.936 39 H 0.075 0.925 40 H 0.112 0.888 41 H 0.111 0.889 42 H 0.112 0.888 43 H 0.117 0.883 44 H 0.096 0.904 45 H 0.042 0.958 46 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.064 -2.320 -6.183 6.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.054 4.054 3 N -0.225 5.225 4 C -0.075 4.075 5 N -0.151 5.151 6 H 0.268 0.732 7 C -0.193 4.193 8 C 0.374 3.626 9 O -0.425 6.425 10 N -0.341 5.341 11 C 0.013 3.987 12 C 0.050 3.950 13 H 0.060 0.940 14 C -0.130 4.130 15 C -0.068 4.068 16 C -0.145 4.145 17 C -0.158 4.158 18 C -0.148 4.148 19 C -0.142 4.142 20 C -0.080 4.080 21 C 0.082 3.918 22 N -0.312 5.312 23 C -0.374 4.374 24 H 0.090 0.910 25 C -0.191 4.191 26 N -0.550 5.550 27 Si 0.721 3.279 28 H -0.211 1.211 29 H -0.216 1.216 30 H -0.202 1.202 31 H 0.089 0.911 32 H 0.084 0.916 33 H 0.106 0.894 34 H 0.228 0.772 35 H 0.247 0.753 36 H 0.079 0.921 37 H 0.088 0.912 38 H 0.082 0.918 39 H 0.093 0.907 40 H 0.130 0.870 41 H 0.129 0.871 42 H 0.130 0.870 43 H 0.135 0.865 44 H 0.114 0.886 45 H 0.060 0.940 46 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -2.053 -1.630 -6.100 6.639 hybrid contribution 1.412 -0.573 1.100 1.879 sum -0.641 -2.203 -5.000 5.501 Atomic orbital electron populations 1.20223 0.86841 1.03182 1.02750 1.20979 0.96729 0.86790 1.00906 1.70070 1.00471 1.30590 1.21331 1.25015 0.97246 0.82343 1.02897 1.43416 1.08529 1.08752 1.54384 0.73154 1.21061 0.84209 0.95433 1.18591 1.16804 0.85914 0.82709 0.77217 1.90751 1.16246 1.83101 1.52399 1.45798 1.10169 1.05729 1.72417 1.21281 0.96297 0.79853 1.01247 1.20728 0.91003 0.91327 0.91914 0.94006 1.20873 0.95486 0.95690 1.00914 1.19476 0.95204 0.93293 0.98858 1.21130 0.98575 0.93265 1.01557 1.20859 0.94260 0.98873 1.01776 1.20960 0.97583 0.95479 1.00791 1.21116 0.98968 0.93115 1.00995 1.20990 0.92499 0.99273 0.95204 1.19781 0.87760 0.81984 1.02236 1.44040 1.18537 1.43145 1.25517 1.19168 0.92455 1.10947 1.14859 0.90995 1.25021 0.95853 0.98290 0.99947 1.69969 1.00026 1.44112 1.40846 0.86430 0.78000 0.80031 0.83406 1.21142 1.21579 1.20236 0.91147 0.91578 0.89359 0.77203 0.75259 0.92056 0.91245 0.91764 0.90712 0.87033 0.87079 0.86966 0.86484 0.88561 0.94014 0.93366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.09 9.88 36.01 0.36 -0.73 16 2 C 0.08 1.38 7.15 -82.51 -0.59 0.79 16 3 N -0.50 -8.22 11.20 -10.64 -0.12 -8.34 16 4 C 0.21 2.83 13.01 -90.57 -1.18 1.65 16 5 N -0.55 -7.97 6.07 -10.79 -0.07 -8.04 16 6 H 0.43 5.70 8.32 -40.82 -0.34 5.36 16 7 C -0.08 -1.32 7.08 -82.14 -0.58 -1.90 16 8 C 0.59 10.95 7.79 -12.82 -0.10 10.85 16 9 O -0.55 -11.13 14.82 5.20 0.08 -11.06 16 10 N -0.69 -12.30 4.01 -61.59 -0.25 -12.55 16 11 C 0.14 2.36 4.46 -4.04 -0.02 2.34 16 12 C 0.16 2.77 3.02 -67.65 -0.20 2.57 16 13 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 14 C -0.09 -1.44 5.21 -28.04 -0.15 -1.59 16 15 C -0.07 -1.17 5.76 -104.60 -0.60 -1.77 16 16 C -0.13 -1.91 9.59 -39.42 -0.38 -2.29 16 17 C -0.14 -1.97 10.04 -39.69 -0.40 -2.37 16 18 C -0.13 -1.90 10.05 -39.68 -0.40 -2.30 16 19 C -0.12 -2.06 9.62 -39.46 -0.38 -2.44 16 20 C -0.08 -1.45 5.82 -104.56 -0.61 -2.06 16 21 C 0.21 4.36 4.80 -5.05 -0.02 4.34 16 22 N -0.59 -12.29 2.85 -166.41 -0.47 -12.77 16 23 C -0.25 -5.64 6.95 -15.06 -0.10 -5.74 16 24 H 0.07 1.75 6.19 -52.49 -0.32 1.42 16 25 C 0.01 0.19 5.08 -17.43 -0.09 0.10 16 26 N -0.91 -22.15 11.06 55.49 0.61 -21.53 16 27 Si 0.89 20.20 29.57 -169.99 -5.03 15.18 16 28 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 29 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 30 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 31 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 33 H 0.09 1.38 6.48 -51.93 -0.34 1.04 16 34 H 0.21 1.86 8.06 -52.48 -0.42 1.44 16 35 H 0.41 7.43 6.58 -40.82 -0.27 7.16 16 36 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 37 H 0.07 1.31 7.32 -51.93 -0.38 0.93 16 38 H 0.06 0.87 8.10 -51.93 -0.42 0.45 16 39 H 0.07 1.24 8.02 -51.93 -0.42 0.82 16 40 H 0.11 1.42 8.05 -52.49 -0.42 1.00 16 41 H 0.11 1.27 8.06 -52.49 -0.42 0.85 16 42 H 0.11 1.35 8.06 -52.48 -0.42 0.92 16 43 H 0.12 1.83 8.05 -52.49 -0.42 1.41 16 44 H 0.10 2.29 6.46 -51.93 -0.34 1.96 16 45 H 0.04 0.93 8.14 -51.92 -0.42 0.51 16 46 H 0.26 6.24 8.31 -40.82 -0.34 5.90 16 LS Contribution 372.98 15.07 5.62 5.62 Total: -1.00 -28.27 372.98 -11.25 -39.52 By element: Atomic # 1 Polarization: 20.71 SS G_CDS: -6.18 Total: 14.52 kcal Atomic # 6 Polarization: 4.89 SS G_CDS: -5.45 Total: -0.55 kcal Atomic # 7 Polarization: -62.93 SS G_CDS: -0.29 Total: -63.22 kcal Atomic # 8 Polarization: -11.13 SS G_CDS: 0.08 Total: -11.06 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.03 Total: 15.18 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -28.27 -11.25 -39.52 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054062014.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.701 kcal (2) G-P(sol) polarization free energy of solvation -28.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.516 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds