Wall clock time and date at job start Tue Mar 31 2020 23:48:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.33319 * 126.10686 * 2 1 4 4 C 1.30856 * 109.68420 * 180.02562 * 3 2 1 5 5 N 1.34500 * 109.16464 * 359.73153 * 4 3 2 6 6 H 0.97002 * 126.47317 * 180.29406 * 5 4 3 7 7 C 1.36663 * 126.10608 * 180.02562 * 2 1 3 8 8 C 1.46765 * 126.84538 * 359.97377 * 7 2 1 9 9 O 1.21685 * 119.99780 * 0.02562 * 8 7 2 10 10 N 1.34774 * 120.00029 * 179.97438 * 8 7 2 11 11 C 1.46500 * 119.99986 * 179.97438 * 10 8 7 12 12 C 1.53002 * 109.46936 * 180.02562 * 11 10 8 13 13 H 1.09003 * 109.76445 * 294.25768 * 12 11 10 14 14 C 1.52787 * 109.81354 * 173.50011 * 12 11 10 15 15 C 1.50596 * 110.84945 * 192.80060 * 14 12 11 16 16 C 1.38980 * 117.63619 * 199.97989 * 15 14 12 17 17 C 1.37915 * 120.57631 * 181.14076 * 16 15 14 18 18 C 1.38258 * 119.82817 * 0.02562 * 17 16 15 19 19 C 1.37962 * 119.72308 * 359.74906 * 18 17 16 20 20 C 1.37677 * 122.84144 * 20.63001 * 15 14 12 21 21 C 1.50804 * 122.33227 * 357.88976 * 20 15 14 22 22 N 1.46676 * 109.69296 * 11.94458 * 21 20 15 23 23 C 1.36940 * 121.32012 * 135.58865 * 22 21 20 24 24 H 1.07997 * 120.00298 * 208.26118 * 23 22 21 25 25 C 1.38811 * 119.99930 * 28.25686 * 23 22 21 26 26 N 1.31627 * 119.99716 * 10.71780 * 25 23 22 27 27 Si 1.86798 * 120.00424 * 190.71787 * 25 23 22 28 28 H 1.48500 * 109.47107 * 89.99836 * 27 25 23 29 29 H 1.48496 * 109.47030 * 210.00474 * 27 25 23 30 30 H 1.48508 * 109.46584 * 329.99916 * 27 25 23 31 31 H 1.09003 * 109.46609 * 269.97522 * 1 2 3 32 32 H 1.09002 * 109.46894 * 29.96954 * 1 2 3 33 33 H 1.08998 * 109.47162 * 149.97365 * 1 2 3 34 34 H 1.08005 * 125.41735 * 179.97438 * 4 3 2 35 35 H 0.96997 * 120.00201 * 0.02562 * 10 8 7 36 36 H 1.09000 * 109.46773 * 60.00242 * 11 10 8 37 37 H 1.08998 * 109.47282 * 300.00267 * 11 10 8 38 38 H 1.08999 * 109.20802 * 72.44388 * 14 12 11 39 39 H 1.09003 * 109.19980 * 313.15150 * 14 12 11 40 40 H 1.07992 * 119.70997 * 1.11626 * 16 15 14 41 41 H 1.07996 * 120.08391 * 179.97438 * 17 16 15 42 42 H 1.08003 * 120.14015 * 179.76097 * 18 17 16 43 43 H 1.08001 * 119.74977 * 180.02562 * 19 18 17 44 44 H 1.08998 * 109.43793 * 132.01865 * 21 20 15 45 45 H 1.09009 * 109.43514 * 251.92686 * 21 20 15 46 46 H 0.97001 * 119.99365 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2927 1.0771 0.0000 4 6 3.5479 0.7072 -0.0006 5 7 3.6122 -0.6363 0.0050 6 1 4.4189 -1.1749 0.0099 7 6 2.3124 -1.1041 -0.0005 8 6 1.8821 -2.5073 -0.0006 9 8 0.6962 -2.7800 -0.0007 10 7 2.8004 -3.4937 -0.0016 11 6 2.3709 -4.8944 -0.0011 12 6 3.6005 -5.8048 -0.0019 13 1 4.1469 -5.6856 -0.9375 14 6 3.1669 -7.2608 0.1613 15 6 4.3487 -8.1400 0.4748 16 6 4.2186 -9.5034 0.2383 17 6 5.2546 -10.3672 0.5257 18 6 6.4337 -9.8753 1.0542 19 6 6.5674 -8.5218 1.2857 20 6 5.5275 -7.6505 0.9907 21 6 5.7489 -6.1801 1.2419 22 7 4.4744 -5.4625 1.1323 23 6 4.1118 -4.5115 2.0484 24 1 3.0670 -4.3244 2.2480 25 6 5.0871 -3.7879 2.7207 26 7 6.3433 -3.8595 2.3342 27 14 4.6171 -2.7126 4.1740 28 1 4.6973 -3.5085 5.4252 29 1 5.5499 -1.5604 4.2594 30 1 3.2300 -2.2140 3.9926 31 1 -0.3633 -0.0004 1.0277 32 1 -0.3633 0.8903 -0.5134 33 1 -0.3633 -0.8897 -0.5142 34 1 4.3971 1.3745 -0.0011 35 1 3.7457 -3.2764 -0.0019 36 1 1.7721 -5.0910 -0.8905 37 1 1.7741 -5.0911 0.8895 38 1 2.7014 -7.6021 -0.7633 39 1 2.4429 -7.3304 0.9732 40 1 3.2982 -9.8897 -0.1737 41 1 5.1448 -11.4253 0.3392 42 1 7.2468 -10.5478 1.2847 43 1 7.4884 -8.1371 1.6981 44 1 6.1588 -6.0407 2.2423 45 1 6.4498 -5.7877 0.5050 46 1 7.0248 -3.3536 2.8038 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054062014.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:48:31 Heat of formation + Delta-G solvation = 51.545633 kcal Electronic energy + Delta-G solvation = -29981.540419 eV Core-core repulsion = 26064.581923 eV Total energy + Delta-G solvation = -3916.958496 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.16281 -40.90035 -40.11012 -38.09813 -35.51281 -34.67017 -34.00425 -32.98144 -32.26068 -31.62772 -30.48258 -28.39644 -27.39031 -26.68185 -24.57271 -23.90853 -22.90032 -22.68847 -21.84342 -20.86072 -20.55551 -19.71287 -18.17748 -17.75678 -17.12902 -16.91769 -16.70241 -16.50748 -16.04717 -16.00529 -15.67954 -15.31390 -15.21487 -15.12745 -14.68384 -14.56585 -14.05316 -13.91815 -13.80170 -13.72820 -13.63437 -13.29863 -13.14038 -13.06199 -12.84567 -12.64243 -12.56958 -12.30451 -12.17921 -11.91021 -11.61449 -11.50829 -11.32302 -10.99766 -10.85423 -10.71406 -10.02015 -9.53975 -9.43609 -9.26479 -8.70160 -7.91814 -5.35815 0.32865 0.58714 0.62640 1.33502 1.41246 1.46091 1.86150 1.99626 2.26021 2.37639 2.42682 2.98304 3.25525 3.47929 3.55606 3.81720 3.89852 4.10220 4.15812 4.22520 4.24437 4.29240 4.39173 4.40570 4.49381 4.65959 4.71489 4.76887 4.82187 4.83579 4.91274 4.92167 4.98463 5.07969 5.19435 5.22471 5.27177 5.41075 5.51058 5.53396 5.58706 5.67084 5.70582 5.74490 6.00962 6.27108 6.31112 6.32326 6.58364 6.91810 7.10889 7.20990 7.75972 8.32289 9.14279 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014270 B = 0.003761 C = 0.003240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1961.674325 B = 7442.452738 C = 8640.104824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.071 3.929 3 N -0.528 5.528 4 C 0.230 3.770 5 N -0.544 5.544 6 H 0.434 0.566 7 C -0.106 4.106 8 C 0.586 3.414 9 O -0.570 6.570 10 N -0.690 5.690 11 C 0.142 3.858 12 C 0.160 3.840 13 H 0.045 0.955 14 C -0.085 4.085 15 C -0.084 4.084 16 C -0.128 4.128 17 C -0.132 4.132 18 C -0.128 4.128 19 C -0.137 4.137 20 C -0.108 4.108 21 C 0.223 3.777 22 N -0.598 5.598 23 C -0.229 4.229 24 H 0.060 0.940 25 C -0.022 4.022 26 N -0.920 5.920 27 Si 0.931 3.069 28 H -0.296 1.296 29 H -0.288 1.288 30 H -0.289 1.289 31 H 0.070 0.930 32 H 0.083 0.917 33 H 0.078 0.922 34 H 0.258 0.742 35 H 0.408 0.592 36 H 0.082 0.918 37 H 0.051 0.949 38 H 0.096 0.904 39 H 0.068 0.932 40 H 0.140 0.860 41 H 0.147 0.853 42 H 0.141 0.859 43 H 0.115 0.885 44 H 0.060 0.940 45 H 0.018 0.982 46 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.129 -3.734 -7.274 8.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.063 4.063 3 N -0.249 5.249 4 C -0.055 4.055 5 N -0.149 5.149 6 H 0.274 0.726 7 C -0.222 4.222 8 C 0.373 3.627 9 O -0.451 6.451 10 N -0.339 5.339 11 C 0.018 3.982 12 C 0.054 3.946 13 H 0.063 0.937 14 C -0.124 4.124 15 C -0.084 4.084 16 C -0.146 4.146 17 C -0.150 4.150 18 C -0.146 4.146 19 C -0.156 4.156 20 C -0.110 4.110 21 C 0.098 3.902 22 N -0.322 5.322 23 C -0.359 4.359 24 H 0.077 0.923 25 C -0.219 4.219 26 N -0.566 5.566 27 Si 0.763 3.237 28 H -0.224 1.224 29 H -0.214 1.214 30 H -0.215 1.215 31 H 0.089 0.911 32 H 0.102 0.898 33 H 0.097 0.903 34 H 0.274 0.726 35 H 0.245 0.755 36 H 0.100 0.900 37 H 0.069 0.931 38 H 0.115 0.885 39 H 0.086 0.914 40 H 0.158 0.842 41 H 0.165 0.835 42 H 0.159 0.841 43 H 0.133 0.867 44 H 0.079 0.921 45 H 0.036 0.964 46 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -2.113 -3.068 -7.203 8.109 hybrid contribution 1.445 -0.186 1.416 2.031 sum -0.668 -3.255 -5.787 6.673 Atomic orbital electron populations 1.20221 0.86046 1.03582 1.02866 1.21351 0.97661 0.87072 1.00241 1.70111 1.01527 1.30448 1.22795 1.26001 0.97790 0.82257 0.99415 1.43426 1.07876 1.09291 1.54301 0.72560 1.20933 0.85520 0.94839 1.20932 1.17006 0.85638 0.83399 0.76681 1.90722 1.17064 1.83644 1.53654 1.45791 1.09920 1.05957 1.72214 1.21281 0.96054 0.79573 1.01313 1.20844 0.90420 0.92688 0.90670 0.93677 1.20824 0.95214 0.94079 1.02255 1.19657 0.94741 0.94769 0.99214 1.21441 1.00041 0.92191 1.00877 1.21324 0.93306 1.00595 0.99742 1.21305 0.98873 0.94684 0.99720 1.21231 0.98594 0.94279 1.01499 1.20788 0.94401 0.97745 0.98041 1.19355 0.87235 0.84163 0.99468 1.44141 1.18907 1.42822 1.26312 1.19073 0.91618 1.10495 1.14713 0.92276 1.25285 0.95999 0.99419 1.01205 1.70054 1.00224 1.44884 1.41429 0.85837 0.76864 0.79163 0.81871 1.22370 1.21423 1.21533 0.91096 0.89775 0.90284 0.72601 0.75520 0.89968 0.93069 0.88545 0.91354 0.84227 0.83511 0.84074 0.86706 0.92142 0.96383 0.93899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.08 9.88 71.24 0.70 -1.38 16 2 C 0.07 2.42 7.15 41.97 0.30 2.72 16 3 N -0.53 -16.52 11.20 -187.58 -2.10 -18.62 16 4 C 0.23 5.76 13.01 180.33 2.35 8.10 16 5 N -0.54 -15.49 6.07 -188.04 -1.14 -16.63 16 6 H 0.43 11.35 8.32 -92.71 -0.77 10.58 16 7 C -0.11 -3.67 7.08 40.01 0.28 -3.38 16 8 C 0.59 22.14 7.79 86.47 0.67 22.82 16 9 O -0.57 -23.63 14.82 -4.30 -0.06 -23.69 16 10 N -0.69 -24.87 4.01 -467.00 -1.87 -26.74 16 11 C 0.14 4.86 4.46 86.38 0.38 5.24 16 12 C 0.16 5.58 3.02 44.78 0.14 5.72 16 13 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 14 C -0.08 -2.58 5.21 29.74 0.16 -2.42 16 15 C -0.08 -2.73 5.76 -19.85 -0.11 -2.85 16 16 C -0.13 -3.39 9.59 22.37 0.21 -3.17 16 17 C -0.13 -3.18 10.04 22.20 0.22 -2.96 16 18 C -0.13 -3.38 10.05 22.21 0.22 -3.15 16 19 C -0.14 -4.51 9.62 22.35 0.22 -4.30 16 20 C -0.11 -4.03 5.82 -19.82 -0.12 -4.15 16 21 C 0.22 9.74 4.80 85.63 0.41 10.15 16 22 N -0.60 -25.52 2.85 -680.38 -1.94 -27.47 16 23 C -0.23 -10.79 6.95 84.03 0.58 -10.21 16 24 H 0.06 2.95 6.19 -2.91 -0.02 2.93 16 25 C -0.02 -1.09 5.08 84.86 0.43 -0.66 16 26 N -0.92 -46.37 11.06 21.65 0.24 -46.13 16 27 Si 0.93 42.48 29.57 68.60 2.03 44.51 16 28 H -0.30 -13.94 7.11 99.48 0.71 -13.23 16 29 H -0.29 -12.97 7.11 99.48 0.71 -12.26 16 30 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 31 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 32 H 0.08 2.14 8.14 -2.39 -0.02 2.13 16 33 H 0.08 2.50 6.48 -2.39 -0.02 2.48 16 34 H 0.26 3.62 8.06 -2.91 -0.02 3.60 16 35 H 0.41 15.06 6.58 -92.71 -0.61 14.45 16 36 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 37 H 0.05 1.95 7.32 -2.39 -0.02 1.93 16 38 H 0.10 2.31 8.10 -2.39 -0.02 2.29 16 39 H 0.07 2.18 8.02 -2.39 -0.02 2.16 16 40 H 0.14 2.89 8.05 -2.91 -0.02 2.87 16 41 H 0.15 2.53 8.06 -2.91 -0.02 2.50 16 42 H 0.14 2.86 8.06 -2.91 -0.02 2.84 16 43 H 0.11 3.67 8.05 -2.91 -0.02 3.65 16 44 H 0.06 3.03 6.46 -2.39 -0.02 3.02 16 45 H 0.02 0.86 8.14 -2.38 -0.02 0.84 16 46 H 0.25 12.58 8.31 -92.71 -0.77 11.80 16 Total: -1.00 -62.79 372.98 1.85 -60.94 By element: Atomic # 1 Polarization: 38.06 SS G_CDS: -0.35 Total: 37.71 kcal Atomic # 6 Polarization: 9.07 SS G_CDS: 7.05 Total: 16.13 kcal Atomic # 7 Polarization: -128.77 SS G_CDS: -6.82 Total: -135.59 kcal Atomic # 8 Polarization: -23.63 SS G_CDS: -0.06 Total: -23.69 kcal Atomic # 14 Polarization: 42.48 SS G_CDS: 2.03 Total: 44.51 kcal Total: -62.79 1.85 -60.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054062014.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.483 kcal (2) G-P(sol) polarization free energy of solvation -62.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.937 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds