Wall clock time and date at job start Tue Mar 31 2020 23:48:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.33326 * 126.10745 * 2 1 4 4 C 1.30855 * 109.68469 * 180.27527 * 3 2 1 5 5 N 1.34499 * 109.16691 * 359.77177 * 4 3 2 6 6 H 0.97001 * 126.47447 * 180.02562 * 5 4 3 7 7 C 1.36669 * 126.10934 * 179.88455 * 2 1 3 8 8 C 1.46757 * 126.84402 * 359.97438 * 7 2 1 9 9 O 1.21690 * 119.99868 * 359.70599 * 8 7 2 10 10 N 1.34774 * 120.00465 * 179.70961 * 8 7 2 11 11 C 1.46503 * 120.00634 * 179.97438 * 10 8 7 12 12 C 1.52989 * 109.47142 * 180.02562 * 11 10 8 13 13 H 1.09005 * 109.77349 * 64.24990 * 12 11 10 14 14 C 1.52794 * 109.77476 * 184.99662 * 12 11 10 15 15 C 1.50604 * 110.86039 * 167.05446 * 14 12 11 16 16 C 1.38974 * 117.61106 * 160.41199 * 15 14 12 17 17 C 1.37909 * 120.58873 * 179.53586 * 16 15 14 18 18 C 1.38263 * 119.82313 * 359.96700 * 17 16 15 19 19 C 1.37960 * 119.71893 * 0.23393 * 18 17 16 20 20 C 1.37672 * 122.87548 * 340.31154 * 15 14 12 21 21 C 1.50820 * 122.35598 * 0.75693 * 20 15 14 22 22 N 1.46688 * 109.66667 * 348.90874 * 21 20 15 23 23 C 1.36927 * 121.35039 * 224.35109 * 22 21 20 24 24 H 1.08003 * 120.00479 * 151.50611 * 23 22 21 25 25 C 1.38817 * 120.00140 * 331.51416 * 23 22 21 26 26 N 1.31618 * 120.00217 * 163.47533 * 25 23 22 27 27 Si 1.86801 * 119.99726 * 343.47098 * 25 23 22 28 28 H 1.48500 * 109.46765 * 86.62691 * 27 25 23 29 29 H 1.48495 * 109.47332 * 206.62360 * 27 25 23 30 30 H 1.48499 * 109.47380 * 326.62707 * 27 25 23 31 31 H 1.09002 * 109.47136 * 270.11324 * 1 2 3 32 32 H 1.09001 * 109.47393 * 30.11992 * 1 2 3 33 33 H 1.08999 * 109.47089 * 150.12055 * 1 2 3 34 34 H 1.07995 * 125.41747 * 179.78668 * 4 3 2 35 35 H 0.97007 * 119.99688 * 359.97438 * 10 8 7 36 36 H 1.08996 * 109.46750 * 59.99616 * 11 10 8 37 37 H 1.09002 * 109.46342 * 300.00192 * 11 10 8 38 38 H 1.08998 * 109.20236 * 287.41079 * 14 12 11 39 39 H 1.09004 * 109.19628 * 46.70735 * 14 12 11 40 40 H 1.08005 * 119.70553 * 359.56154 * 16 15 14 41 41 H 1.07998 * 120.08907 * 179.97438 * 17 16 15 42 42 H 1.07998 * 120.14170 * 180.25711 * 18 17 16 43 43 H 1.07993 * 119.74793 * 179.97438 * 19 18 17 44 44 H 1.08999 * 109.43596 * 228.84878 * 21 20 15 45 45 H 1.08994 * 109.43496 * 108.96890 * 21 20 15 46 46 H 0.96998 * 119.99656 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2926 1.0772 0.0000 4 6 3.5478 0.7072 -0.0059 5 7 3.6122 -0.6362 -0.0049 6 1 4.4189 -1.1749 -0.0081 7 6 2.3124 -1.1041 0.0022 8 6 1.8821 -2.5072 0.0056 9 8 0.6962 -2.7800 0.0120 10 7 2.8004 -3.4937 0.0016 11 6 2.3710 -4.8944 0.0055 12 6 3.6005 -5.8048 0.0003 13 1 4.1668 -5.6649 0.9212 14 6 3.1630 -7.2637 -0.1209 15 6 4.3367 -8.1506 -0.4434 16 6 4.2083 -9.5094 -0.1819 17 6 5.2415 -10.3788 -0.4624 18 6 6.4163 -9.8969 -1.0094 19 6 6.5482 -8.5478 -1.2663 20 6 5.5102 -7.6712 -0.9804 21 6 5.7241 -6.2078 -1.2760 22 7 4.4504 -5.4894 -1.1599 23 6 4.0673 -4.5633 -2.0928 24 1 3.0182 -4.3860 -2.2786 25 6 5.0271 -3.8523 -2.8000 26 7 4.6945 -3.2147 -3.9023 27 14 6.7910 -3.8004 -2.1870 28 1 7.5315 -4.9766 -2.7101 29 1 7.4434 -2.5537 -2.6614 30 1 6.8002 -3.8299 -0.7024 31 1 -0.3633 0.0020 1.0277 32 1 -0.3634 0.8889 -0.5157 33 1 -0.3633 -0.8911 -0.5120 34 1 4.3969 1.3745 -0.0106 35 1 3.7458 -3.2763 -0.0039 36 1 1.7683 -5.0921 -0.8809 37 1 1.7781 -5.0900 0.8990 38 1 2.7197 -7.5845 0.8218 39 1 2.4198 -7.3504 -0.9136 40 1 3.2911 -9.8881 0.2445 41 1 5.1331 -11.4332 -0.2555 42 1 7.2271 -10.5736 -1.2350 43 1 7.4658 -8.1708 -1.6931 44 1 6.1131 -6.0953 -2.2880 45 1 6.4396 -5.7949 -0.5649 46 1 5.3652 -2.7176 -4.3962 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054062015.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:48:34 Heat of formation + Delta-G solvation = 73.477660 kcal Electronic energy + Delta-G solvation = -30002.376929 eV Core-core repulsion = 26086.369477 eV Total energy + Delta-G solvation = -3916.007452 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.92111 -39.76906 -38.74766 -36.82948 -34.13219 -33.19648 -32.74940 -31.89027 -31.00604 -30.48247 -29.51047 -27.15399 -25.80424 -25.41593 -23.40322 -22.63624 -21.84486 -21.39156 -20.53915 -19.66712 -19.23984 -18.38787 -16.77811 -16.50554 -15.78373 -15.56482 -15.45882 -15.17859 -15.07289 -14.63540 -14.55204 -14.14469 -14.04511 -13.72804 -13.42283 -12.98625 -12.80985 -12.67851 -12.65978 -12.51418 -12.49496 -12.25289 -11.93382 -11.79841 -11.56982 -11.30357 -11.12276 -10.82073 -10.66836 -10.39662 -10.16542 -10.06360 -9.76366 -9.73578 -9.44232 -8.94493 -8.56099 -8.51472 -8.22149 -8.12383 -7.22519 -6.15301 -3.58061 1.61469 1.64195 1.65431 3.05465 3.10148 3.17041 3.18794 3.25136 3.60839 3.81655 4.01011 4.25370 4.56038 4.66610 4.96161 5.01748 5.14367 5.16652 5.20909 5.26888 5.34466 5.47601 5.48181 5.59738 5.66094 5.75455 5.85698 5.90005 5.98700 6.04427 6.05758 6.12906 6.17383 6.20310 6.25456 6.27074 6.35806 6.40602 6.61364 6.70935 6.74662 6.84865 6.92950 7.01414 7.28202 7.42777 7.67101 7.96553 8.12837 8.18315 8.65765 8.66981 9.45184 9.83009 10.99077 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014877 B = 0.003813 C = 0.003244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1881.635870 B = 7340.773362 C = 8629.550251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.082 3.918 3 N -0.503 5.503 4 C 0.210 3.790 5 N -0.547 5.547 6 H 0.424 0.576 7 C -0.073 4.073 8 C 0.593 3.407 9 O -0.543 6.543 10 N -0.692 5.692 11 C 0.138 3.862 12 C 0.160 3.840 13 H 0.046 0.954 14 C -0.092 4.092 15 C -0.058 4.058 16 C -0.125 4.125 17 C -0.132 4.132 18 C -0.128 4.128 19 C -0.123 4.123 20 C -0.077 4.077 21 C 0.156 3.844 22 N -0.602 5.602 23 C -0.260 4.260 24 H 0.095 0.905 25 C 0.028 3.972 26 N -0.897 5.897 27 Si 0.871 3.129 28 H -0.283 1.283 29 H -0.302 1.302 30 H -0.272 1.272 31 H 0.069 0.931 32 H 0.066 0.934 33 H 0.089 0.911 34 H 0.211 0.789 35 H 0.403 0.597 36 H 0.075 0.925 37 H 0.064 0.936 38 H 0.069 0.931 39 H 0.081 0.919 40 H 0.116 0.884 41 H 0.115 0.885 42 H 0.115 0.885 43 H 0.116 0.884 44 H 0.086 0.914 45 H 0.039 0.961 46 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.643 -4.133 9.842 10.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.052 4.052 3 N -0.223 5.223 4 C -0.075 4.075 5 N -0.151 5.151 6 H 0.263 0.737 7 C -0.189 4.189 8 C 0.379 3.621 9 O -0.421 6.421 10 N -0.342 5.342 11 C 0.014 3.986 12 C 0.054 3.946 13 H 0.064 0.936 14 C -0.131 4.131 15 C -0.059 4.059 16 C -0.143 4.143 17 C -0.150 4.150 18 C -0.146 4.146 19 C -0.142 4.142 20 C -0.079 4.079 21 C 0.031 3.969 22 N -0.326 5.326 23 C -0.388 4.388 24 H 0.112 0.888 25 C -0.172 4.172 26 N -0.539 5.539 27 Si 0.701 3.299 28 H -0.211 1.211 29 H -0.230 1.230 30 H -0.198 1.198 31 H 0.087 0.913 32 H 0.085 0.915 33 H 0.107 0.893 34 H 0.227 0.773 35 H 0.239 0.761 36 H 0.093 0.907 37 H 0.082 0.918 38 H 0.088 0.912 39 H 0.099 0.901 40 H 0.134 0.866 41 H 0.133 0.867 42 H 0.134 0.866 43 H 0.134 0.866 44 H 0.104 0.896 45 H 0.057 0.943 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 0.528 -3.411 9.685 10.281 hybrid contribution 2.739 -1.061 -0.107 2.939 sum 3.267 -4.472 9.578 11.064 Atomic orbital electron populations 1.20222 0.86806 1.03486 1.02481 1.20966 0.96727 0.86736 1.00755 1.70068 1.00429 1.30581 1.21246 1.24987 0.97289 0.82242 1.02936 1.43343 1.08366 1.08723 1.54712 0.73727 1.21022 0.84114 0.95389 1.18419 1.16743 0.85841 0.82637 0.76909 1.90756 1.16183 1.83052 1.52144 1.45671 1.09744 1.05783 1.72981 1.21265 0.95959 0.79690 1.01642 1.20757 0.91322 0.91837 0.90696 0.93600 1.20880 0.95693 0.95145 1.01406 1.19455 0.94835 0.93572 0.97995 1.21153 0.98775 0.93046 1.01354 1.20927 0.94089 0.99102 1.00859 1.20961 0.97800 0.95331 1.00505 1.21103 0.98756 0.93415 1.00924 1.20411 0.93212 0.97356 0.96912 1.20410 0.89424 0.86465 1.00588 1.44383 1.19003 1.44859 1.24366 1.18899 0.94437 1.12443 1.13019 0.88758 1.25300 0.97141 0.97632 0.97116 1.69791 1.34042 1.35133 1.14903 0.87232 0.87046 0.76478 0.79128 1.21061 1.22983 1.19780 0.91272 0.91493 0.89265 0.77260 0.76089 0.90717 0.91799 0.91222 0.90089 0.86588 0.86707 0.86645 0.86592 0.89624 0.94337 0.92525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.11 9.88 36.00 0.36 -0.75 16 2 C 0.08 1.43 7.15 -82.51 -0.59 0.84 16 3 N -0.50 -8.33 11.20 -10.65 -0.12 -8.45 16 4 C 0.21 2.87 13.01 -90.57 -1.18 1.70 16 5 N -0.55 -8.07 6.07 -10.79 -0.07 -8.14 16 6 H 0.42 5.54 8.32 -40.82 -0.34 5.20 16 7 C -0.07 -1.28 7.08 -82.14 -0.58 -1.86 16 8 C 0.59 11.17 7.79 -12.82 -0.10 11.07 16 9 O -0.54 -11.21 14.82 5.20 0.08 -11.13 16 10 N -0.69 -12.26 4.09 -61.60 -0.25 -12.51 16 11 C 0.14 2.33 4.43 -4.05 -0.02 2.32 16 12 C 0.16 2.68 2.99 -67.64 -0.20 2.48 16 13 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 14 C -0.09 -1.38 5.21 -28.04 -0.15 -1.53 16 15 C -0.06 -0.94 5.76 -104.60 -0.60 -1.54 16 16 C -0.13 -1.73 9.59 -39.43 -0.38 -2.11 16 17 C -0.13 -1.71 10.04 -39.69 -0.40 -2.10 16 18 C -0.13 -1.73 10.05 -39.67 -0.40 -2.12 16 19 C -0.12 -1.93 9.62 -39.46 -0.38 -2.31 16 20 C -0.08 -1.36 5.82 -104.55 -0.61 -1.96 16 21 C 0.16 3.07 3.97 -5.03 -0.02 3.05 16 22 N -0.60 -12.17 2.63 -166.38 -0.44 -12.60 16 23 C -0.26 -6.20 7.51 -15.06 -0.11 -6.31 16 24 H 0.09 2.53 6.42 -52.48 -0.34 2.20 16 25 C 0.03 0.71 5.30 -17.43 -0.09 0.62 16 26 N -0.90 -25.07 13.97 55.49 0.78 -24.30 16 27 Si 0.87 19.24 24.16 -169.99 -4.11 15.13 16 28 H -0.28 -6.26 6.47 56.52 0.37 -5.90 16 29 H -0.30 -6.92 7.11 56.52 0.40 -6.51 16 30 H -0.27 -5.62 6.58 56.52 0.37 -5.25 16 31 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 32 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.09 1.48 6.49 -51.93 -0.34 1.15 16 34 H 0.21 1.87 8.06 -52.49 -0.42 1.45 16 35 H 0.40 7.09 6.73 -40.82 -0.27 6.81 16 36 H 0.07 1.43 7.25 -51.93 -0.38 1.05 16 37 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 38 H 0.07 0.86 8.11 -51.93 -0.42 0.44 16 39 H 0.08 1.28 8.03 -51.93 -0.42 0.87 16 40 H 0.12 1.34 8.05 -52.48 -0.42 0.91 16 41 H 0.11 1.18 8.06 -52.49 -0.42 0.75 16 42 H 0.12 1.26 8.06 -52.49 -0.42 0.83 16 43 H 0.12 1.67 8.05 -52.49 -0.42 1.25 16 44 H 0.09 1.87 5.11 -51.93 -0.27 1.60 16 45 H 0.04 0.76 6.35 -51.93 -0.33 0.43 16 46 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 366.28 15.07 5.52 5.52 Total: -1.00 -30.87 366.28 -10.17 -41.04 By element: Atomic # 1 Polarization: 22.06 SS G_CDS: -6.10 Total: 15.96 kcal Atomic # 6 Polarization: 4.93 SS G_CDS: -5.45 Total: -0.52 kcal Atomic # 7 Polarization: -65.89 SS G_CDS: -0.10 Total: -65.99 kcal Atomic # 8 Polarization: -11.21 SS G_CDS: 0.08 Total: -11.13 kcal Atomic # 14 Polarization: 19.24 SS G_CDS: -4.11 Total: 15.13 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -30.87 -10.17 -41.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054062015.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.513 kcal (2) G-P(sol) polarization free energy of solvation -30.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.035 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds