Wall clock time and date at job start Tue Mar 31 2020 23:48:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.33326 * 126.10745 * 2 1 4 4 C 1.30855 * 109.68469 * 180.27527 * 3 2 1 5 5 N 1.34499 * 109.16691 * 359.77177 * 4 3 2 6 6 H 0.97001 * 126.47447 * 180.02562 * 5 4 3 7 7 C 1.36669 * 126.10934 * 179.88455 * 2 1 3 8 8 C 1.46757 * 126.84402 * 359.97438 * 7 2 1 9 9 O 1.21690 * 119.99868 * 359.70599 * 8 7 2 10 10 N 1.34774 * 120.00465 * 179.70961 * 8 7 2 11 11 C 1.46503 * 120.00634 * 179.97438 * 10 8 7 12 12 C 1.52989 * 109.47142 * 180.02562 * 11 10 8 13 13 H 1.09005 * 109.77349 * 64.24990 * 12 11 10 14 14 C 1.52794 * 109.77476 * 184.99662 * 12 11 10 15 15 C 1.50604 * 110.86039 * 167.05446 * 14 12 11 16 16 C 1.38974 * 117.61106 * 160.41199 * 15 14 12 17 17 C 1.37909 * 120.58873 * 179.53586 * 16 15 14 18 18 C 1.38263 * 119.82313 * 359.96700 * 17 16 15 19 19 C 1.37960 * 119.71893 * 0.23393 * 18 17 16 20 20 C 1.37672 * 122.87548 * 340.31154 * 15 14 12 21 21 C 1.50820 * 122.35598 * 0.75693 * 20 15 14 22 22 N 1.46688 * 109.66667 * 348.90874 * 21 20 15 23 23 C 1.36927 * 121.35039 * 224.35109 * 22 21 20 24 24 H 1.08003 * 120.00479 * 151.50611 * 23 22 21 25 25 C 1.38817 * 120.00140 * 331.51416 * 23 22 21 26 26 N 1.31618 * 120.00217 * 163.47533 * 25 23 22 27 27 Si 1.86801 * 119.99726 * 343.47098 * 25 23 22 28 28 H 1.48500 * 109.46765 * 86.62691 * 27 25 23 29 29 H 1.48495 * 109.47332 * 206.62360 * 27 25 23 30 30 H 1.48499 * 109.47380 * 326.62707 * 27 25 23 31 31 H 1.09002 * 109.47136 * 270.11324 * 1 2 3 32 32 H 1.09001 * 109.47393 * 30.11992 * 1 2 3 33 33 H 1.08999 * 109.47089 * 150.12055 * 1 2 3 34 34 H 1.07995 * 125.41747 * 179.78668 * 4 3 2 35 35 H 0.97007 * 119.99688 * 359.97438 * 10 8 7 36 36 H 1.08996 * 109.46750 * 59.99616 * 11 10 8 37 37 H 1.09002 * 109.46342 * 300.00192 * 11 10 8 38 38 H 1.08998 * 109.20236 * 287.41079 * 14 12 11 39 39 H 1.09004 * 109.19628 * 46.70735 * 14 12 11 40 40 H 1.08005 * 119.70553 * 359.56154 * 16 15 14 41 41 H 1.07998 * 120.08907 * 179.97438 * 17 16 15 42 42 H 1.07998 * 120.14170 * 180.25711 * 18 17 16 43 43 H 1.07993 * 119.74793 * 179.97438 * 19 18 17 44 44 H 1.08999 * 109.43596 * 228.84878 * 21 20 15 45 45 H 1.08994 * 109.43496 * 108.96890 * 21 20 15 46 46 H 0.96998 * 119.99656 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2926 1.0772 0.0000 4 6 3.5478 0.7072 -0.0059 5 7 3.6122 -0.6362 -0.0049 6 1 4.4189 -1.1749 -0.0081 7 6 2.3124 -1.1041 0.0022 8 6 1.8821 -2.5072 0.0056 9 8 0.6962 -2.7800 0.0120 10 7 2.8004 -3.4937 0.0016 11 6 2.3710 -4.8944 0.0055 12 6 3.6005 -5.8048 0.0003 13 1 4.1668 -5.6649 0.9212 14 6 3.1630 -7.2637 -0.1209 15 6 4.3367 -8.1506 -0.4434 16 6 4.2083 -9.5094 -0.1819 17 6 5.2415 -10.3788 -0.4624 18 6 6.4163 -9.8969 -1.0094 19 6 6.5482 -8.5478 -1.2663 20 6 5.5102 -7.6712 -0.9804 21 6 5.7241 -6.2078 -1.2760 22 7 4.4504 -5.4894 -1.1599 23 6 4.0673 -4.5633 -2.0928 24 1 3.0182 -4.3860 -2.2786 25 6 5.0271 -3.8523 -2.8000 26 7 4.6945 -3.2147 -3.9023 27 14 6.7910 -3.8004 -2.1870 28 1 7.5315 -4.9766 -2.7101 29 1 7.4434 -2.5537 -2.6614 30 1 6.8002 -3.8299 -0.7024 31 1 -0.3633 0.0020 1.0277 32 1 -0.3634 0.8889 -0.5157 33 1 -0.3633 -0.8911 -0.5120 34 1 4.3969 1.3745 -0.0106 35 1 3.7458 -3.2763 -0.0039 36 1 1.7683 -5.0921 -0.8809 37 1 1.7781 -5.0900 0.8990 38 1 2.7197 -7.5845 0.8218 39 1 2.4198 -7.3504 -0.9136 40 1 3.2911 -9.8881 0.2445 41 1 5.1331 -11.4332 -0.2555 42 1 7.2271 -10.5736 -1.2350 43 1 7.4658 -8.1708 -1.6931 44 1 6.1131 -6.0953 -2.2880 45 1 6.4396 -5.7949 -0.5649 46 1 5.3652 -2.7176 -4.3962 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054062015.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:48:33 Heat of formation + Delta-G solvation = 54.382270 kcal Electronic energy + Delta-G solvation = -30003.204967 eV Core-core repulsion = 26086.369477 eV Total energy + Delta-G solvation = -3916.835490 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.15511 -41.05741 -40.14404 -38.23539 -35.59885 -34.67441 -34.05971 -33.39981 -32.30107 -31.84756 -30.82369 -28.42120 -27.36801 -26.71365 -24.97570 -23.91139 -23.00483 -22.68576 -21.88426 -21.03943 -20.61762 -19.72948 -18.36462 -17.85803 -17.15962 -16.97480 -16.80659 -16.63266 -16.42666 -15.94383 -15.86097 -15.43634 -15.32805 -15.17495 -14.85390 -14.41332 -14.19688 -14.13700 -13.91362 -13.87899 -13.73020 -13.69732 -13.23877 -13.05556 -12.89686 -12.77409 -12.49290 -12.27360 -12.16675 -11.84892 -11.56229 -11.51421 -11.42657 -10.99353 -10.85695 -10.77606 -10.04140 -9.64450 -9.43445 -9.39698 -8.94515 -8.12271 -5.51257 0.33691 0.50537 0.52071 1.29255 1.35503 1.46599 1.86276 1.98873 2.23347 2.39351 2.41582 2.88656 2.97467 3.23475 3.55972 3.71595 3.88834 3.92229 4.09539 4.13682 4.16053 4.28867 4.30108 4.35166 4.36752 4.50034 4.54931 4.64211 4.75277 4.77355 4.82049 4.82996 4.85759 4.90648 4.98632 5.08439 5.15681 5.17475 5.33648 5.51193 5.59401 5.61809 5.64545 5.76535 5.88912 6.17762 6.19653 6.31292 6.55083 6.83203 6.92379 7.20154 7.57262 7.99709 9.06074 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014877 B = 0.003813 C = 0.003244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1881.635870 B = 7340.773362 C = 8629.550251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.072 3.928 3 N -0.528 5.528 4 C 0.230 3.770 5 N -0.545 5.545 6 H 0.431 0.569 7 C -0.104 4.104 8 C 0.588 3.412 9 O -0.569 6.569 10 N -0.690 5.690 11 C 0.142 3.858 12 C 0.162 3.838 13 H 0.065 0.935 14 C -0.087 4.087 15 C -0.075 4.075 16 C -0.126 4.126 17 C -0.125 4.125 18 C -0.126 4.126 19 C -0.138 4.138 20 C -0.108 4.108 21 C 0.159 3.841 22 N -0.611 5.611 23 C -0.226 4.226 24 H 0.056 0.944 25 C -0.025 4.025 26 N -0.953 5.953 27 Si 0.931 3.069 28 H -0.286 1.286 29 H -0.313 1.313 30 H -0.246 1.246 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.070 0.930 34 H 0.260 0.740 35 H 0.404 0.596 36 H 0.044 0.956 37 H 0.088 0.912 38 H 0.104 0.896 39 H 0.067 0.933 40 H 0.143 0.857 41 H 0.149 0.851 42 H 0.144 0.856 43 H 0.118 0.882 44 H 0.057 0.943 45 H 0.043 0.957 46 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.058 -5.947 12.239 13.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.063 4.063 3 N -0.249 5.249 4 C -0.054 4.054 5 N -0.149 5.149 6 H 0.271 0.729 7 C -0.220 4.220 8 C 0.375 3.625 9 O -0.450 6.450 10 N -0.339 5.339 11 C 0.018 3.982 12 C 0.057 3.943 13 H 0.083 0.917 14 C -0.126 4.126 15 C -0.076 4.076 16 C -0.143 4.143 17 C -0.143 4.143 18 C -0.144 4.144 19 C -0.156 4.156 20 C -0.109 4.109 21 C 0.034 3.966 22 N -0.336 5.336 23 C -0.355 4.355 24 H 0.074 0.926 25 C -0.220 4.220 26 N -0.599 5.599 27 Si 0.760 3.240 28 H -0.213 1.213 29 H -0.242 1.242 30 H -0.170 1.170 31 H 0.101 0.899 32 H 0.097 0.903 33 H 0.089 0.911 34 H 0.275 0.725 35 H 0.239 0.761 36 H 0.063 0.937 37 H 0.106 0.894 38 H 0.123 0.877 39 H 0.085 0.915 40 H 0.160 0.840 41 H 0.167 0.833 42 H 0.162 0.838 43 H 0.136 0.864 44 H 0.075 0.925 45 H 0.061 0.939 46 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 1.962 -5.281 12.136 13.380 hybrid contribution 2.251 -0.602 -0.842 2.478 sum 4.213 -5.883 11.294 13.413 Atomic orbital electron populations 1.20209 0.86110 1.03109 1.03260 1.21335 0.97650 0.87105 1.00175 1.70103 1.01551 1.30421 1.22786 1.26010 0.97836 0.82194 0.99333 1.43342 1.07716 1.09272 1.54592 0.72874 1.20900 0.85537 0.94792 1.20784 1.16986 0.85624 0.83432 0.76418 1.90724 1.17140 1.83640 1.53520 1.45657 1.09588 1.06015 1.72594 1.21283 0.96107 0.79486 1.01334 1.20940 0.90612 0.92957 0.89839 0.91704 1.20836 0.95369 0.93629 1.02725 1.19618 0.94397 0.94956 0.98591 1.21457 1.00159 0.92019 1.00708 1.21382 0.93193 1.00727 0.98994 1.21320 0.98996 0.94670 0.99390 1.21254 0.98544 0.94453 1.01365 1.20283 0.95001 0.96062 0.99558 1.20271 0.88747 0.88490 0.99064 1.44432 1.19806 1.44383 1.24959 1.18584 0.92558 1.11930 1.12460 0.92649 1.25793 1.00917 0.98056 0.97205 1.69956 1.35215 1.37729 1.16960 0.86240 0.82248 0.75488 0.79985 1.21317 1.24185 1.16987 0.89888 0.90257 0.91092 0.72456 0.76051 0.93719 0.89371 0.87738 0.91494 0.83961 0.83293 0.83801 0.86360 0.92505 0.93911 0.93231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.16 9.88 71.23 0.70 -1.46 16 2 C 0.07 2.51 7.15 41.96 0.30 2.81 16 3 N -0.53 -16.97 11.20 -187.59 -2.10 -19.07 16 4 C 0.23 5.89 13.01 180.33 2.35 8.23 16 5 N -0.54 -15.69 6.07 -188.05 -1.14 -16.83 16 6 H 0.43 10.90 8.32 -92.71 -0.77 10.13 16 7 C -0.10 -3.70 7.08 40.01 0.28 -3.42 16 8 C 0.59 22.88 7.79 86.47 0.67 23.56 16 9 O -0.57 -24.46 14.82 -4.32 -0.06 -24.53 16 10 N -0.69 -24.90 4.09 -467.02 -1.91 -26.82 16 11 C 0.14 4.82 4.43 86.37 0.38 5.20 16 12 C 0.16 5.27 2.99 44.78 0.13 5.40 16 13 H 0.07 1.93 8.14 -2.38 -0.02 1.91 16 14 C -0.09 -2.46 5.21 29.75 0.16 -2.30 16 15 C -0.08 -2.26 5.76 -19.85 -0.11 -2.37 16 16 C -0.13 -3.01 9.59 22.37 0.21 -2.79 16 17 C -0.13 -2.69 10.04 22.20 0.22 -2.47 16 18 C -0.13 -2.95 10.05 22.21 0.22 -2.73 16 19 C -0.14 -4.04 9.62 22.35 0.22 -3.83 16 20 C -0.11 -3.64 5.82 -19.82 -0.12 -3.75 16 21 C 0.16 6.20 3.97 85.64 0.34 6.54 16 22 N -0.61 -24.80 2.63 -680.29 -1.79 -26.59 16 23 C -0.23 -11.16 7.51 84.04 0.63 -10.53 16 24 H 0.06 3.16 6.42 -2.91 -0.02 3.15 16 25 C -0.02 -1.28 5.30 84.86 0.45 -0.83 16 26 N -0.95 -55.81 13.97 21.65 0.30 -55.50 16 27 Si 0.93 40.57 24.16 68.60 1.66 42.23 16 28 H -0.29 -12.47 6.47 99.48 0.64 -11.82 16 29 H -0.31 -14.10 7.11 99.48 0.71 -13.40 16 30 H -0.25 -9.50 6.58 99.48 0.65 -8.84 16 31 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 32 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 33 H 0.07 2.47 6.49 -2.39 -0.02 2.45 16 34 H 0.26 3.65 8.06 -2.91 -0.02 3.63 16 35 H 0.40 14.29 6.73 -92.70 -0.62 13.66 16 36 H 0.04 1.79 7.25 -2.39 -0.02 1.77 16 37 H 0.09 2.57 8.14 -2.39 -0.02 2.55 16 38 H 0.10 2.22 8.11 -2.39 -0.02 2.20 16 39 H 0.07 2.09 8.03 -2.38 -0.02 2.07 16 40 H 0.14 2.61 8.05 -2.91 -0.02 2.59 16 41 H 0.15 2.20 8.06 -2.91 -0.02 2.17 16 42 H 0.14 2.51 8.06 -2.91 -0.02 2.48 16 43 H 0.12 3.29 8.05 -2.91 -0.02 3.26 16 44 H 0.06 2.52 5.11 -2.39 -0.01 2.50 16 45 H 0.04 1.62 6.35 -2.39 -0.02 1.60 16 46 H 0.26 14.65 8.31 -92.71 -0.77 13.87 16 Total: -1.00 -70.94 366.28 1.52 -69.41 By element: Atomic # 1 Polarization: 42.89 SS G_CDS: -0.47 Total: 42.42 kcal Atomic # 6 Polarization: 8.22 SS G_CDS: 7.04 Total: 15.27 kcal Atomic # 7 Polarization: -138.16 SS G_CDS: -6.64 Total: -144.80 kcal Atomic # 8 Polarization: -24.46 SS G_CDS: -0.06 Total: -24.53 kcal Atomic # 14 Polarization: 40.57 SS G_CDS: 1.66 Total: 42.23 kcal Total: -70.94 1.52 -69.41 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054062015.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.795 kcal (2) G-P(sol) polarization free energy of solvation -70.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.413 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds