Wall clock time and date at job start Tue Mar 31 2020 23:34:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35370 * 126.38475 * 2 1 4 4 C 1.41502 * 105.50158 * 180.08851 * 3 2 1 5 5 C 1.47703 * 126.51694 * 179.90206 * 4 3 2 6 6 O 1.21570 * 120.00459 * 359.71199 * 5 4 3 7 7 N 1.34782 * 120.00064 * 179.71221 * 5 4 3 8 8 C 1.46501 * 120.00096 * 180.02562 * 7 5 4 9 9 C 1.50694 * 109.47405 * 179.97438 * 8 7 5 10 10 C 1.38258 * 120.02332 * 270.22002 * 9 8 7 11 11 C 1.38143 * 119.96364 * 180.23476 * 10 9 8 12 12 C 1.38449 * 120.10356 * 359.52277 * 11 10 9 13 13 C 1.38065 * 119.93194 * 0.25758 * 12 11 10 14 14 C 1.38148 * 120.01921 * 89.99621 * 9 8 7 15 15 C 1.50781 * 108.86152 * 179.97438 * 13 12 11 16 16 N 1.46634 * 107.70246 * 0.02562 * 15 13 12 17 17 C 1.36929 * 126.56839 * 180.02562 * 16 15 13 18 18 H 1.08005 * 120.00070 * 0.02562 * 17 16 15 19 19 C 1.38814 * 120.00426 * 179.97438 * 17 16 15 20 20 N 1.31617 * 119.99648 * 359.97438 * 19 17 16 21 21 Si 1.86806 * 120.00072 * 179.97438 * 19 17 16 22 22 H 1.48495 * 109.47081 * 90.00069 * 21 19 17 23 23 H 1.48498 * 109.46993 * 210.00193 * 21 19 17 24 24 H 1.48497 * 109.47025 * 330.00126 * 21 19 17 25 25 C 1.46643 * 106.87045 * 359.97438 * 16 15 13 26 26 N 1.31813 * 106.96424 * 359.63679 * 4 3 2 27 27 N 1.28470 * 110.07263 * 0.23053 * 26 4 3 28 28 C 1.46500 * 124.88151 * 179.97438 * 27 26 4 29 29 H 1.08995 * 109.47006 * 270.31717 * 1 2 3 30 30 H 1.08994 * 109.46914 * 30.32191 * 1 2 3 31 31 H 1.09000 * 109.46957 * 150.31950 * 1 2 3 32 32 H 1.07997 * 127.24868 * 359.96992 * 3 2 1 33 33 H 0.96997 * 120.00206 * 359.97438 * 7 5 4 34 34 H 1.09005 * 109.47248 * 59.99819 * 8 7 5 35 35 H 1.09003 * 109.47210 * 300.00035 * 8 7 5 36 36 H 1.07998 * 120.01283 * 0.03461 * 10 9 8 37 37 H 1.08002 * 119.95132 * 179.80781 * 11 10 9 38 38 H 1.08002 * 119.94394 * 0.03126 * 14 9 8 39 39 H 1.09000 * 109.81260 * 119.54868 * 15 13 12 40 40 H 1.08998 * 109.81519 * 240.45467 * 15 13 12 41 41 H 0.97001 * 119.99333 * 179.97438 * 20 19 17 42 42 H 1.09002 * 109.80797 * 240.45438 * 25 16 15 43 43 H 1.08999 * 109.81012 * 119.54608 * 25 16 15 44 44 H 1.09000 * 109.47026 * 90.02865 * 28 27 26 45 45 H 1.09003 * 109.46864 * 210.02390 * 28 27 26 46 46 H 1.08997 * 109.47095 * 330.02073 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3100 1.0898 0.0000 4 6 3.6321 0.5854 -0.0021 5 6 4.8764 1.3812 -0.0050 6 8 4.8214 2.5956 -0.0110 7 7 6.0730 0.7609 -0.0009 8 6 7.3072 1.5502 -0.0031 9 6 8.4959 0.6240 0.0029 10 6 9.0372 0.2011 1.2028 11 6 10.1299 -0.6441 1.2069 12 6 10.6780 -1.0764 0.0113 13 6 10.1346 -0.6577 -1.1869 14 6 9.0426 0.1933 -1.1904 15 6 10.9183 -1.2726 -2.3188 16 7 11.9786 -2.0972 -1.7308 17 6 12.9149 -2.8290 -2.4110 18 1 12.9168 -2.8331 -3.4910 19 6 13.8624 -3.5647 -1.7126 20 7 13.8611 -3.5585 -0.3964 21 14 15.1393 -4.5636 -2.6407 22 1 16.3383 -3.7240 -2.8909 23 1 15.5245 -5.7482 -1.8322 24 1 14.5702 -5.0126 -3.9367 25 6 11.8450 -1.9873 -0.2746 26 7 3.5420 -0.7296 0.0048 27 7 2.3081 -1.0871 0.0061 28 6 1.8377 -2.4745 0.0126 29 1 -0.3633 0.0057 1.0276 30 1 -0.3633 0.8870 -0.5188 31 1 -0.3633 -0.8928 -0.5089 32 1 2.0057 2.1260 -0.0005 33 1 6.1171 -0.2080 0.0043 34 1 7.3356 2.1829 0.8840 35 1 7.3375 2.1749 -0.8959 36 1 8.6080 0.5339 2.1362 37 1 10.5545 -0.9719 2.1443 38 1 8.6177 0.5214 -2.1276 39 1 10.2619 -1.8944 -2.9276 40 1 11.3585 -0.4870 -2.9330 41 1 14.5230 -4.0730 0.0916 42 1 12.7561 -1.5648 0.1491 43 1 11.6587 -2.9717 0.1547 44 1 1.7202 -2.8134 1.0419 45 1 0.8786 -2.5354 -0.5017 46 1 2.5643 -3.1069 -0.4976 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054257778.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:34:18 Heat of formation + Delta-G solvation = 100.327993 kcal Electronic energy + Delta-G solvation = -27708.631139 eV Core-core repulsion = 23793.788005 eV Total energy + Delta-G solvation = -3914.843134 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.96696 -39.86367 -39.15042 -36.32633 -34.48718 -33.89028 -33.00577 -32.22431 -31.13779 -29.76442 -28.20650 -27.63076 -26.93993 -25.93572 -24.60274 -22.91486 -21.98136 -21.27207 -20.40465 -20.16428 -19.66067 -17.50898 -17.00979 -16.75118 -16.74639 -15.91844 -15.51903 -15.24342 -14.72271 -14.51325 -14.46339 -14.28529 -14.18988 -13.82702 -13.71675 -13.44075 -13.26776 -13.05901 -12.98571 -12.95057 -12.60311 -12.34035 -11.92280 -11.81616 -11.64439 -11.53191 -11.09569 -11.07820 -10.84402 -10.46229 -10.30109 -10.19352 -10.11830 -9.79601 -9.44676 -9.21896 -9.06736 -8.94765 -8.38224 -8.00022 -6.85167 -5.81755 -3.14902 1.36304 1.60989 1.78238 1.81627 2.12464 3.21712 3.32329 3.37210 3.41752 3.43997 4.00313 4.17755 4.24574 4.40883 4.53716 4.59673 4.63390 4.77149 4.89999 5.01469 5.02094 5.18804 5.28410 5.30271 5.35484 5.36961 5.42988 5.54175 5.60509 5.61222 5.72160 5.89436 6.05558 6.12125 6.14356 6.33954 6.43953 6.52833 6.56486 6.57046 6.79933 6.83211 7.07632 7.33748 7.35823 7.40300 7.53660 7.68995 7.69213 8.13233 8.13673 9.11225 9.71076 10.38467 11.32381 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.017917 B = 0.001997 C = 0.001885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1562.351531 B =14020.958851 C =14851.982618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.006 3.994 3 C -0.179 4.179 4 C -0.014 4.014 5 C 0.604 3.396 6 O -0.537 6.537 7 N -0.710 5.710 8 C 0.170 3.830 9 C -0.131 4.131 10 C -0.102 4.102 11 C -0.112 4.112 12 C -0.081 4.081 13 C -0.107 4.107 14 C -0.083 4.083 15 C 0.176 3.824 16 N -0.601 5.601 17 C -0.225 4.225 18 H 0.084 0.916 19 C -0.008 4.008 20 N -0.923 5.923 21 Si 0.918 3.082 22 H -0.287 1.287 23 H -0.290 1.290 24 H -0.280 1.280 25 C 0.206 3.794 26 N -0.259 5.259 27 N -0.281 5.281 28 C 0.084 3.916 29 H 0.078 0.922 30 H 0.086 0.914 31 H 0.069 0.931 32 H 0.162 0.838 33 H 0.409 0.591 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.119 0.881 37 H 0.121 0.879 38 H 0.117 0.883 39 H 0.036 0.964 40 H 0.037 0.963 41 H 0.255 0.745 42 H 0.064 0.936 43 H 0.064 0.936 44 H 0.086 0.914 45 H 0.095 0.905 46 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.040 5.382 3.431 27.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.118 4.118 3 C -0.207 4.207 4 C -0.174 4.174 5 C 0.388 3.612 6 O -0.413 6.413 7 N -0.362 5.362 8 C 0.047 3.953 9 C -0.132 4.132 10 C -0.121 4.121 11 C -0.131 4.131 12 C -0.082 4.082 13 C -0.108 4.108 14 C -0.102 4.102 15 C 0.050 3.950 16 N -0.327 5.327 17 C -0.353 4.353 18 H 0.101 0.899 19 C -0.204 4.204 20 N -0.570 5.570 21 Si 0.748 3.252 22 H -0.214 1.214 23 H -0.216 1.216 24 H -0.206 1.206 25 C 0.081 3.919 26 N -0.095 5.095 27 N -0.070 5.070 28 C -0.057 4.057 29 H 0.097 0.903 30 H 0.105 0.895 31 H 0.088 0.912 32 H 0.179 0.821 33 H 0.245 0.755 34 H 0.094 0.906 35 H 0.094 0.906 36 H 0.137 0.863 37 H 0.139 0.861 38 H 0.135 0.865 39 H 0.054 0.946 40 H 0.054 0.946 41 H 0.065 0.935 42 H 0.082 0.918 43 H 0.082 0.918 44 H 0.104 0.896 45 H 0.113 0.887 46 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -26.251 5.006 3.458 26.947 hybrid contribution 0.271 -0.432 -0.356 0.623 sum -25.980 4.573 3.102 26.561 Atomic orbital electron populations 1.20346 0.86605 1.03856 1.03296 1.21421 0.95472 0.86723 1.08166 1.21510 0.90469 0.99586 1.09094 1.21893 0.95158 0.89735 1.10640 1.16885 0.81637 0.86341 0.76347 1.90788 1.86872 1.12881 1.50711 1.46028 1.04842 1.11213 1.74098 1.20151 0.80113 0.92084 1.02913 1.19455 0.98390 1.01800 0.93530 1.20826 0.96353 0.97969 0.96938 1.20490 0.96583 0.98719 0.97295 1.21541 0.97454 0.96234 0.92978 1.20712 0.95758 0.97305 0.96999 1.20307 0.95415 0.97220 0.97209 1.19703 0.89745 0.93231 0.92322 1.43956 1.33052 1.54501 1.01210 1.18980 1.05233 1.20556 0.90522 0.89861 1.24844 0.99377 1.00396 0.95817 1.69927 1.37235 1.44988 1.04862 0.86020 0.81272 0.79370 0.78513 1.21444 1.21572 1.20557 1.19736 0.91195 0.95305 0.85630 1.73568 1.01790 1.14903 1.19219 1.45340 1.02796 1.07605 1.51284 1.22191 1.01653 0.77233 1.04577 0.90316 0.89529 0.91178 0.82070 0.75549 0.90596 0.90588 0.86300 0.86135 0.86514 0.94624 0.94575 0.93479 0.91795 0.91821 0.89575 0.88662 0.88256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.32 10.10 36.01 0.36 0.04 16 2 C 0.01 0.05 6.92 -82.21 -0.57 -0.52 16 3 C -0.18 -1.91 10.73 -39.36 -0.42 -2.33 16 4 C -0.01 -0.18 7.13 -82.77 -0.59 -0.77 16 5 C 0.60 8.51 7.82 -12.39 -0.10 8.41 16 6 O -0.54 -8.89 16.93 5.30 0.09 -8.80 16 7 N -0.71 -9.11 5.55 -62.47 -0.35 -9.46 16 8 C 0.17 2.17 5.80 -5.20 -0.03 2.14 16 9 C -0.13 -1.88 5.25 -104.65 -0.55 -2.43 16 10 C -0.10 -1.49 9.70 -39.61 -0.38 -1.87 16 11 C -0.11 -1.90 10.05 -39.54 -0.40 -2.30 16 12 C -0.08 -1.65 6.22 -104.57 -0.65 -2.30 16 13 C -0.11 -2.08 6.22 -104.57 -0.65 -2.73 16 14 C -0.08 -1.32 9.70 -39.54 -0.38 -1.70 16 15 C 0.18 3.81 7.25 -5.08 -0.04 3.78 16 16 N -0.60 -15.69 3.41 -175.67 -0.60 -16.28 16 17 C -0.23 -6.27 10.32 -15.06 -0.16 -6.43 16 18 H 0.08 2.21 7.83 -52.48 -0.41 1.80 16 19 C -0.01 -0.22 5.49 -17.43 -0.10 -0.32 16 20 N -0.92 -26.79 10.44 55.49 0.58 -26.21 16 21 Si 0.92 21.86 29.55 -169.99 -5.02 16.83 16 22 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 23 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 24 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 25 C 0.21 5.09 5.39 -5.08 -0.03 5.07 16 26 N -0.26 -3.05 11.67 33.42 0.39 -2.66 16 27 N -0.28 -2.48 3.70 -63.85 -0.24 -2.71 16 28 C 0.08 0.35 11.11 59.85 0.66 1.02 16 29 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.07 0.15 7.00 -51.93 -0.36 -0.21 16 32 H 0.16 1.54 8.06 -52.49 -0.42 1.12 16 33 H 0.41 5.07 8.19 -40.82 -0.33 4.74 16 34 H 0.08 0.94 8.09 -51.93 -0.42 0.52 16 35 H 0.08 0.97 8.09 -51.93 -0.42 0.55 16 36 H 0.12 1.44 8.06 -52.49 -0.42 1.02 16 37 H 0.12 1.85 8.06 -52.49 -0.42 1.43 16 38 H 0.12 1.64 8.06 -52.49 -0.42 1.22 16 39 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 42 H 0.06 1.73 7.49 -51.93 -0.39 1.34 16 43 H 0.06 1.72 7.49 -51.93 -0.39 1.33 16 44 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 45 H 0.09 0.14 6.95 -51.93 -0.36 -0.22 16 46 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 LS Contribution 388.27 15.07 5.85 5.85 Total: -1.00 -34.36 388.27 -9.75 -44.11 By element: Atomic # 1 Polarization: 9.02 SS G_CDS: -6.45 Total: 2.57 kcal Atomic # 6 Polarization: 0.78 SS G_CDS: -4.01 Total: -3.23 kcal Atomic # 7 Polarization: -57.12 SS G_CDS: -0.21 Total: -57.33 kcal Atomic # 8 Polarization: -8.89 SS G_CDS: 0.09 Total: -8.80 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -34.36 -9.75 -44.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054257778.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.440 kcal (2) G-P(sol) polarization free energy of solvation -34.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.112 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds