Wall clock time and date at job start Tue Mar 31 2020 23:34:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35370 * 126.38475 * 2 1 4 4 C 1.41502 * 105.50158 * 180.08851 * 3 2 1 5 5 C 1.47703 * 126.51694 * 179.90206 * 4 3 2 6 6 O 1.21570 * 120.00459 * 359.71199 * 5 4 3 7 7 N 1.34782 * 120.00064 * 179.71221 * 5 4 3 8 8 C 1.46501 * 120.00096 * 180.02562 * 7 5 4 9 9 C 1.50694 * 109.47405 * 179.97438 * 8 7 5 10 10 C 1.38258 * 120.02332 * 270.22002 * 9 8 7 11 11 C 1.38143 * 119.96364 * 180.23476 * 10 9 8 12 12 C 1.38449 * 120.10356 * 359.52277 * 11 10 9 13 13 C 1.38065 * 119.93194 * 0.25758 * 12 11 10 14 14 C 1.38148 * 120.01921 * 89.99621 * 9 8 7 15 15 C 1.50781 * 108.86152 * 179.97438 * 13 12 11 16 16 N 1.46634 * 107.70246 * 0.02562 * 15 13 12 17 17 C 1.36929 * 126.56839 * 180.02562 * 16 15 13 18 18 H 1.08005 * 120.00070 * 0.02562 * 17 16 15 19 19 C 1.38814 * 120.00426 * 179.97438 * 17 16 15 20 20 N 1.31617 * 119.99648 * 359.97438 * 19 17 16 21 21 Si 1.86806 * 120.00072 * 179.97438 * 19 17 16 22 22 H 1.48495 * 109.47081 * 90.00069 * 21 19 17 23 23 H 1.48498 * 109.46993 * 210.00193 * 21 19 17 24 24 H 1.48497 * 109.47025 * 330.00126 * 21 19 17 25 25 C 1.46643 * 106.87045 * 359.97438 * 16 15 13 26 26 N 1.31813 * 106.96424 * 359.63679 * 4 3 2 27 27 N 1.28470 * 110.07263 * 0.23053 * 26 4 3 28 28 C 1.46500 * 124.88151 * 179.97438 * 27 26 4 29 29 H 1.08995 * 109.47006 * 270.31717 * 1 2 3 30 30 H 1.08994 * 109.46914 * 30.32191 * 1 2 3 31 31 H 1.09000 * 109.46957 * 150.31950 * 1 2 3 32 32 H 1.07997 * 127.24868 * 359.96992 * 3 2 1 33 33 H 0.96997 * 120.00206 * 359.97438 * 7 5 4 34 34 H 1.09005 * 109.47248 * 59.99819 * 8 7 5 35 35 H 1.09003 * 109.47210 * 300.00035 * 8 7 5 36 36 H 1.07998 * 120.01283 * 0.03461 * 10 9 8 37 37 H 1.08002 * 119.95132 * 179.80781 * 11 10 9 38 38 H 1.08002 * 119.94394 * 0.03126 * 14 9 8 39 39 H 1.09000 * 109.81260 * 119.54868 * 15 13 12 40 40 H 1.08998 * 109.81519 * 240.45467 * 15 13 12 41 41 H 0.97001 * 119.99333 * 179.97438 * 20 19 17 42 42 H 1.09002 * 109.80797 * 240.45438 * 25 16 15 43 43 H 1.08999 * 109.81012 * 119.54608 * 25 16 15 44 44 H 1.09000 * 109.47026 * 90.02865 * 28 27 26 45 45 H 1.09003 * 109.46864 * 210.02390 * 28 27 26 46 46 H 1.08997 * 109.47095 * 330.02073 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3100 1.0898 0.0000 4 6 3.6321 0.5854 -0.0021 5 6 4.8764 1.3812 -0.0050 6 8 4.8214 2.5956 -0.0110 7 7 6.0730 0.7609 -0.0009 8 6 7.3072 1.5502 -0.0031 9 6 8.4959 0.6240 0.0029 10 6 9.0372 0.2011 1.2028 11 6 10.1299 -0.6441 1.2069 12 6 10.6780 -1.0764 0.0113 13 6 10.1346 -0.6577 -1.1869 14 6 9.0426 0.1933 -1.1904 15 6 10.9183 -1.2726 -2.3188 16 7 11.9786 -2.0972 -1.7308 17 6 12.9149 -2.8290 -2.4110 18 1 12.9168 -2.8331 -3.4910 19 6 13.8624 -3.5647 -1.7126 20 7 13.8611 -3.5585 -0.3964 21 14 15.1393 -4.5636 -2.6407 22 1 16.3383 -3.7240 -2.8909 23 1 15.5245 -5.7482 -1.8322 24 1 14.5702 -5.0126 -3.9367 25 6 11.8450 -1.9873 -0.2746 26 7 3.5420 -0.7296 0.0048 27 7 2.3081 -1.0871 0.0061 28 6 1.8377 -2.4745 0.0126 29 1 -0.3633 0.0057 1.0276 30 1 -0.3633 0.8870 -0.5188 31 1 -0.3633 -0.8928 -0.5089 32 1 2.0057 2.1260 -0.0005 33 1 6.1171 -0.2080 0.0043 34 1 7.3356 2.1829 0.8840 35 1 7.3375 2.1749 -0.8959 36 1 8.6080 0.5339 2.1362 37 1 10.5545 -0.9719 2.1443 38 1 8.6177 0.5214 -2.1276 39 1 10.2619 -1.8944 -2.9276 40 1 11.3585 -0.4870 -2.9330 41 1 14.5230 -4.0730 0.0916 42 1 12.7561 -1.5648 0.1491 43 1 11.6587 -2.9717 0.1547 44 1 1.7202 -2.8134 1.0419 45 1 0.8786 -2.5354 -0.5017 46 1 2.5643 -3.1069 -0.4976 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054257778.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:34:17 Heat of formation + Delta-G solvation = 78.123756 kcal Electronic energy + Delta-G solvation = -27709.593987 eV Core-core repulsion = 23793.788005 eV Total energy + Delta-G solvation = -3915.805982 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.67046 -41.22504 -40.34994 -37.88925 -35.78804 -34.57306 -34.06628 -33.54619 -32.50025 -31.43466 -29.35313 -28.39230 -27.92409 -27.51626 -25.98959 -23.94414 -23.48214 -22.11679 -22.02082 -21.45098 -20.63028 -19.00768 -18.28083 -17.55028 -17.40702 -17.22593 -16.92573 -16.48174 -16.15825 -16.06485 -15.86613 -15.64216 -15.09147 -14.95694 -14.77365 -14.51358 -14.04624 -13.93828 -13.71945 -13.52214 -13.48372 -13.41954 -13.31820 -13.28937 -13.06582 -13.04364 -12.95173 -12.70534 -12.11173 -12.00205 -11.85419 -11.83600 -11.66509 -11.38545 -10.92412 -10.31241 -9.97964 -9.89401 -9.73726 -9.60852 -8.86316 -7.94204 -5.31278 0.24726 0.43564 0.50502 1.11960 1.45168 1.48190 1.56957 1.57452 2.18969 2.34828 2.44046 2.84191 3.28079 3.35154 3.43961 3.52514 3.75599 3.77825 3.95119 3.98539 4.12027 4.24154 4.33057 4.35793 4.49167 4.54571 4.60618 4.64961 4.67889 4.72720 4.76413 4.81276 4.82548 4.95670 5.04371 5.11270 5.16184 5.28239 5.28468 5.30855 5.37934 5.42937 5.50716 5.55264 5.84400 5.88988 6.02748 6.08651 6.39688 6.88520 6.99365 7.12146 7.64108 8.32349 9.19042 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.017917 B = 0.001997 C = 0.001885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1562.351531 B =14020.958851 C =14851.982618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.020 3.980 3 C -0.206 4.206 4 C -0.044 4.044 5 C 0.604 3.396 6 O -0.569 6.569 7 N -0.705 5.705 8 C 0.174 3.826 9 C -0.110 4.110 10 C -0.088 4.088 11 C -0.110 4.110 12 C -0.111 4.111 13 C -0.118 4.118 14 C -0.076 4.076 15 C 0.172 3.828 16 N -0.624 5.624 17 C -0.245 4.245 18 H 0.091 0.909 19 C -0.066 4.066 20 N -0.952 5.952 21 Si 0.989 3.011 22 H -0.284 1.284 23 H -0.292 1.292 24 H -0.266 1.266 25 C 0.222 3.778 26 N -0.280 5.280 27 N -0.279 5.279 28 C 0.072 3.928 29 H 0.093 0.907 30 H 0.094 0.906 31 H 0.093 0.907 32 H 0.163 0.837 33 H 0.412 0.588 34 H 0.087 0.913 35 H 0.081 0.919 36 H 0.154 0.846 37 H 0.132 0.868 38 H 0.139 0.861 39 H 0.042 0.958 40 H 0.042 0.958 41 H 0.251 0.749 42 H 0.025 0.975 43 H 0.025 0.975 44 H 0.101 0.899 45 H 0.128 0.872 46 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.173 5.644 3.261 30.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.104 4.104 3 C -0.234 4.234 4 C -0.202 4.202 5 C 0.390 3.610 6 O -0.447 6.447 7 N -0.355 5.355 8 C 0.052 3.948 9 C -0.110 4.110 10 C -0.106 4.106 11 C -0.129 4.129 12 C -0.112 4.112 13 C -0.118 4.118 14 C -0.094 4.094 15 C 0.047 3.953 16 N -0.351 5.351 17 C -0.373 4.373 18 H 0.108 0.892 19 C -0.259 4.259 20 N -0.601 5.601 21 Si 0.816 3.184 22 H -0.210 1.210 23 H -0.218 1.218 24 H -0.190 1.190 25 C 0.097 3.903 26 N -0.117 5.117 27 N -0.068 5.068 28 C -0.067 4.067 29 H 0.111 0.889 30 H 0.113 0.887 31 H 0.112 0.888 32 H 0.181 0.819 33 H 0.248 0.752 34 H 0.105 0.895 35 H 0.099 0.901 36 H 0.172 0.828 37 H 0.150 0.850 38 H 0.157 0.843 39 H 0.059 0.941 40 H 0.059 0.941 41 H 0.060 0.940 42 H 0.043 0.957 43 H 0.043 0.957 44 H 0.120 0.880 45 H 0.146 0.854 46 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -29.402 5.260 3.271 30.047 hybrid contribution 1.067 -0.502 -0.281 1.212 sum -28.335 4.757 2.990 28.887 Atomic orbital electron populations 1.20536 0.83260 1.05481 1.04680 1.22011 0.97255 0.85694 1.05482 1.21727 0.90295 1.00656 1.10692 1.21827 0.95258 0.90387 1.12778 1.17088 0.82262 0.86080 0.75607 1.90759 1.87377 1.14154 1.52374 1.45940 1.04598 1.11286 1.73712 1.20141 0.79228 0.91621 1.03828 1.19628 0.98051 1.00488 0.92868 1.21160 0.94782 0.96147 0.98533 1.20681 0.97007 0.98681 0.96494 1.21209 0.97275 0.97644 0.95061 1.20571 0.97078 0.98813 0.95341 1.20499 0.94019 0.95951 0.98980 1.19796 0.89151 0.92979 0.93357 1.44260 1.33823 1.54925 1.02056 1.19409 1.05853 1.20833 0.91193 0.89160 1.25790 1.01579 1.01755 0.96755 1.70160 1.37824 1.45704 1.06371 0.84927 0.78426 0.77433 0.77602 1.21030 1.21812 1.19036 1.19276 0.91762 0.94350 0.84927 1.73497 1.03632 1.14437 1.20124 1.45816 1.02083 1.09315 1.49567 1.22619 1.03020 0.74920 1.06126 0.88873 0.88701 0.88795 0.81922 0.75206 0.89457 0.90096 0.82830 0.84976 0.84281 0.94051 0.94054 0.93998 0.95743 0.95675 0.88032 0.85406 0.88400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.34 10.10 71.24 0.72 0.38 16 2 C 0.02 0.29 6.92 41.40 0.29 0.58 16 3 C -0.21 -4.21 10.73 22.41 0.24 -3.97 16 4 C -0.04 -1.10 7.13 42.45 0.30 -0.79 16 5 C 0.60 16.56 7.82 86.74 0.68 17.24 16 6 O -0.57 -18.55 16.93 -3.94 -0.07 -18.61 16 7 N -0.70 -16.85 5.55 -469.83 -2.61 -19.45 16 8 C 0.17 3.98 5.80 85.63 0.50 4.48 16 9 C -0.11 -2.85 5.25 -19.88 -0.10 -2.96 16 10 C -0.09 -2.31 9.70 22.25 0.22 -2.10 16 11 C -0.11 -3.65 10.05 22.30 0.22 -3.43 16 12 C -0.11 -4.63 6.22 -19.83 -0.12 -4.75 16 13 C -0.12 -4.55 6.22 -19.83 -0.12 -4.67 16 14 C -0.08 -2.27 9.70 22.30 0.22 -2.06 16 15 C 0.17 7.63 7.25 85.63 0.62 8.25 16 16 N -0.62 -34.07 3.41 -709.69 -2.42 -36.49 16 17 C -0.24 -14.09 10.32 84.04 0.87 -13.22 16 18 H 0.09 4.89 7.83 -2.91 -0.02 4.87 16 19 C -0.07 -3.79 5.49 84.86 0.47 -3.33 16 20 N -0.95 -58.04 10.44 21.65 0.23 -57.82 16 21 Si 0.99 45.95 29.55 68.60 2.03 47.98 16 22 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 23 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 24 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 25 C 0.22 11.71 5.39 85.63 0.46 12.17 16 26 N -0.28 -6.27 11.67 -48.18 -0.56 -6.83 16 27 N -0.28 -4.30 3.70 -355.92 -1.32 -5.62 16 28 C 0.07 0.39 11.11 127.77 1.42 1.81 16 29 H 0.09 0.19 8.14 -2.39 -0.02 0.17 16 30 H 0.09 0.29 8.14 -2.39 -0.02 0.27 16 31 H 0.09 -0.03 7.00 -2.39 -0.02 -0.04 16 32 H 0.16 3.07 8.06 -2.91 -0.02 3.05 16 33 H 0.41 9.51 8.19 -92.71 -0.76 8.75 16 34 H 0.09 1.88 8.09 -2.38 -0.02 1.86 16 35 H 0.08 1.84 8.09 -2.39 -0.02 1.82 16 36 H 0.15 3.06 8.06 -2.91 -0.02 3.04 16 37 H 0.13 3.99 8.06 -2.91 -0.02 3.97 16 38 H 0.14 3.55 8.06 -2.91 -0.02 3.53 16 39 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 40 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 41 H 0.25 14.73 8.31 -92.71 -0.77 13.96 16 42 H 0.02 1.44 7.49 -2.39 -0.02 1.42 16 43 H 0.03 1.48 7.49 -2.39 -0.02 1.46 16 44 H 0.10 0.28 8.14 -2.39 -0.02 0.26 16 45 H 0.13 -0.15 6.95 -2.39 -0.02 -0.17 16 46 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 Total: -1.00 -79.26 388.27 2.40 -76.86 By element: Atomic # 1 Polarization: 16.11 SS G_CDS: 0.25 Total: 16.36 kcal Atomic # 6 Polarization: -3.24 SS G_CDS: 6.86 Total: 3.63 kcal Atomic # 7 Polarization: -119.53 SS G_CDS: -6.67 Total: -126.21 kcal Atomic # 8 Polarization: -18.55 SS G_CDS: -0.07 Total: -18.61 kcal Atomic # 14 Polarization: 45.95 SS G_CDS: 2.03 Total: 47.98 kcal Total: -79.26 2.40 -76.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054257778.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.984 kcal (2) G-P(sol) polarization free energy of solvation -79.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.860 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds