Wall clock time and date at job start Tue Mar 31 2020 23:34:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30439 * 125.99278 * 2 1 4 4 N 1.39929 * 108.90076 * 180.02562 * 3 2 1 5 5 C 1.46501 * 125.75427 * 180.02562 * 4 3 2 6 6 C 1.34257 * 108.49157 * 359.97438 * 4 3 2 7 7 C 1.38042 * 107.41780 * 0.02562 * 6 4 3 8 8 C 1.47428 * 126.41835 * 180.26423 * 7 6 4 9 9 O 1.21598 * 120.00379 * 179.68712 * 8 7 6 10 10 N 1.34783 * 119.99757 * 359.68651 * 8 7 6 11 11 C 1.46496 * 119.99910 * 180.02562 * 10 8 7 12 12 C 1.50700 * 109.46961 * 179.97438 * 11 10 8 13 13 C 1.38253 * 120.01738 * 89.99976 * 12 11 10 14 14 C 1.38146 * 119.96000 * 180.02562 * 13 12 11 15 15 C 1.38442 * 120.10527 * 359.97312 * 14 13 12 16 16 C 1.38067 * 119.93527 * 0.02916 * 15 14 13 17 17 C 1.38148 * 120.02030 * 269.72497 * 12 11 10 18 18 C 1.50770 * 108.86365 * 180.02562 * 16 15 14 19 19 N 1.46637 * 107.70116 * 359.97438 * 18 16 15 20 20 C 1.36939 * 126.55956 * 180.02562 * 19 18 16 21 21 H 1.07993 * 120.00415 * 0.02562 * 20 19 18 22 22 C 1.38823 * 119.99523 * 180.02562 * 20 19 18 23 23 N 1.31613 * 119.99885 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 119.99631 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.47530 * 0.02562 * 24 22 20 26 26 H 1.48503 * 109.46897 * 120.00177 * 24 22 20 27 27 H 1.48498 * 109.46990 * 239.99996 * 24 22 20 28 28 C 1.46634 * 106.87559 * 0.02562 * 19 18 16 29 29 H 1.09000 * 109.46982 * 269.96001 * 1 2 3 30 30 H 1.09001 * 109.47371 * 29.95423 * 1 2 3 31 31 H 1.09000 * 109.47399 * 149.96059 * 1 2 3 32 32 H 1.09004 * 109.46860 * 89.98268 * 5 4 3 33 33 H 1.09005 * 109.47551 * 209.97541 * 5 4 3 34 34 H 1.08997 * 109.47830 * 329.98047 * 5 4 3 35 35 H 1.08008 * 126.29245 * 180.02562 * 6 4 3 36 36 H 0.96997 * 119.99754 * 359.97438 * 10 8 7 37 37 H 1.08999 * 109.47012 * 299.99854 * 11 10 8 38 38 H 1.08999 * 109.46984 * 59.99700 * 11 10 8 39 39 H 1.07996 * 120.02212 * 359.97438 * 13 12 11 40 40 H 1.08003 * 119.94540 * 180.02562 * 14 13 12 41 41 H 1.08000 * 119.94622 * 359.97438 * 17 12 11 42 42 H 1.08996 * 109.81833 * 119.54777 * 18 16 15 43 43 H 1.09006 * 109.81197 * 240.44869 * 18 16 15 44 44 H 0.97001 * 119.99887 * 179.97438 * 23 22 20 45 45 H 1.09000 * 109.81288 * 240.45150 * 28 19 18 46 46 H 1.08993 * 109.81009 * 119.54681 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2735 1.0554 0.0000 4 7 3.6110 0.6441 -0.0006 5 6 4.7787 1.5289 -0.0003 6 6 3.6438 -0.6981 -0.0004 7 6 2.3372 -1.1433 -0.0003 8 6 1.8914 -2.5486 0.0054 9 8 0.7038 -2.8097 0.0107 10 7 2.8002 -3.5439 0.0049 11 6 2.3573 -4.9403 0.0100 12 6 3.5597 -5.8487 0.0075 13 6 4.1162 -6.2627 1.2035 14 6 5.2188 -7.0950 1.1999 15 6 5.7673 -7.5158 0.0004 16 6 5.2116 -7.1023 -1.1940 17 6 4.1031 -6.2728 -1.1897 18 6 5.9979 -7.7033 -2.3314 19 7 7.0739 -8.5128 -1.7508 20 6 8.0173 -9.2292 -2.4378 21 1 8.0130 -9.2313 -3.5178 22 6 8.9792 -9.9526 -1.7461 23 7 8.9840 -9.9503 -0.4299 24 14 10.2656 -10.9304 -2.6833 25 1 10.0435 -10.7696 -4.1427 26 1 11.6195 -10.4320 -2.3313 27 1 10.1570 -12.3663 -2.3207 28 6 6.9463 -8.4085 -0.2937 29 1 -0.3633 -0.0007 1.0277 30 1 -0.3634 0.8904 -0.5131 31 1 -0.3634 -0.8896 -0.5144 32 1 5.0683 1.7479 1.0276 33 1 5.6059 1.0392 -0.5142 34 1 4.5309 2.4579 -0.5137 35 1 4.5297 -1.3159 -0.0003 36 1 3.7476 -3.3355 0.0003 37 1 1.7608 -5.1289 0.9025 38 1 1.7546 -5.1334 -0.8774 39 1 3.6898 -5.9349 2.1400 40 1 5.6531 -7.4186 2.1343 41 1 3.6652 -5.9531 -2.1238 42 1 5.3474 -8.3332 -2.9381 43 1 6.4234 -6.9100 -2.9461 44 1 9.6559 -10.4561 0.0534 45 1 7.8529 -7.9730 0.1263 46 1 6.7776 -9.3966 0.1340 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054258747.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:34:21 Heat of formation + Delta-G solvation = 96.479675 kcal Electronic energy + Delta-G solvation = -27836.182831 eV Core-core repulsion = 23921.172821 eV Total energy + Delta-G solvation = -3915.010010 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.71114 -39.85630 -39.04471 -36.36671 -34.61988 -34.17859 -32.35884 -31.51114 -30.69346 -29.75216 -29.56351 -27.52489 -26.32790 -25.83579 -24.44965 -22.65747 -22.04639 -20.59715 -20.45921 -20.31136 -19.77491 -17.99233 -17.05443 -16.31518 -16.13295 -15.90263 -15.53741 -15.20866 -14.71777 -14.53738 -14.51187 -14.31203 -14.20956 -13.81613 -13.71661 -13.43004 -13.21516 -13.04374 -12.87091 -12.52123 -12.33578 -12.24869 -11.96868 -11.86793 -11.68614 -11.57990 -11.16016 -11.11830 -10.89165 -10.50632 -10.24763 -10.15366 -9.98109 -9.84274 -9.67691 -9.22376 -8.99377 -8.86911 -8.44609 -8.05320 -6.89792 -5.86076 -3.19327 1.19219 1.55528 1.71639 1.91751 1.99899 3.26115 3.32898 3.33789 3.39238 3.41911 3.99917 4.13407 4.25051 4.37050 4.57701 4.66815 4.69472 4.89810 4.93951 4.96857 5.09949 5.16927 5.23631 5.30143 5.39019 5.50068 5.50732 5.55401 5.65688 5.73872 5.77294 5.83778 5.99935 6.08914 6.26971 6.33009 6.44811 6.47282 6.50539 6.51968 6.74184 6.77454 7.02118 7.24926 7.28641 7.31969 7.48919 7.49562 7.65042 8.08792 8.19938 9.07031 9.66846 10.33751 11.28103 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.018162 B = 0.002039 C = 0.001929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1541.289323 B =13732.223803 C =14509.385672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.132 3.868 3 N -0.305 5.305 4 N -0.361 5.361 5 C 0.096 3.904 6 C 0.102 3.898 7 C -0.289 4.289 8 C 0.594 3.406 9 O -0.544 6.544 10 N -0.723 5.723 11 C 0.172 3.828 12 C -0.131 4.131 13 C -0.103 4.103 14 C -0.113 4.113 15 C -0.081 4.081 16 C -0.107 4.107 17 C -0.084 4.084 18 C 0.175 3.825 19 N -0.601 5.601 20 C -0.226 4.226 21 H 0.084 0.916 22 C -0.008 4.008 23 N -0.923 5.923 24 Si 0.918 3.082 25 H -0.278 1.278 26 H -0.289 1.289 27 H -0.289 1.289 28 C 0.205 3.795 29 H 0.079 0.921 30 H 0.070 0.930 31 H 0.096 0.904 32 H 0.080 0.920 33 H 0.093 0.907 34 H 0.093 0.907 35 H 0.184 0.816 36 H 0.398 0.602 37 H 0.074 0.926 38 H 0.074 0.926 39 H 0.119 0.881 40 H 0.120 0.880 41 H 0.117 0.883 42 H 0.037 0.963 43 H 0.036 0.964 44 H 0.255 0.745 45 H 0.064 0.936 46 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.705 20.119 3.432 23.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.035 4.035 3 N -0.127 5.127 4 N -0.139 5.139 5 C -0.045 4.045 6 C -0.050 4.050 7 C -0.304 4.304 8 C 0.381 3.619 9 O -0.423 6.423 10 N -0.374 5.374 11 C 0.050 3.950 12 C -0.132 4.132 13 C -0.122 4.122 14 C -0.131 4.131 15 C -0.082 4.082 16 C -0.107 4.107 17 C -0.103 4.103 18 C 0.050 3.950 19 N -0.328 5.328 20 C -0.353 4.353 21 H 0.102 0.898 22 C -0.204 4.204 23 N -0.570 5.570 24 Si 0.748 3.252 25 H -0.203 1.203 26 H -0.216 1.216 27 H -0.216 1.216 28 C 0.081 3.919 29 H 0.098 0.902 30 H 0.089 0.911 31 H 0.115 0.885 32 H 0.099 0.901 33 H 0.111 0.889 34 H 0.112 0.888 35 H 0.201 0.799 36 H 0.232 0.768 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.137 0.863 40 H 0.138 0.862 41 H 0.135 0.865 42 H 0.054 0.946 43 H 0.054 0.946 44 H 0.065 0.935 45 H 0.082 0.918 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -11.190 21.154 3.454 24.180 hybrid contribution 1.507 -1.326 -0.332 2.034 sum -9.683 19.829 3.122 22.287 Atomic orbital electron populations 1.20345 0.85590 1.04048 1.03565 1.22487 0.97301 0.88701 0.95024 1.77197 0.85957 1.22683 1.26824 1.48306 1.06200 1.04785 1.54600 1.22022 0.83737 0.94766 1.03990 1.23148 0.99060 0.85331 0.97447 1.20267 0.92072 0.94529 1.23515 1.17229 0.85555 0.83417 0.75655 1.90736 1.16285 1.84269 1.50986 1.45987 1.09662 1.05859 1.75938 1.20081 0.93761 0.78386 1.02800 1.19487 0.98545 1.01704 0.93445 1.20832 0.96184 0.98184 0.97007 1.20501 0.96535 0.98814 0.97249 1.21546 0.97553 0.96165 0.92975 1.20721 0.95615 0.97404 0.96995 1.20316 0.95239 0.97533 0.97194 1.19707 0.89562 0.93460 0.92311 1.43971 1.31750 1.55811 1.01225 1.19029 1.04286 1.21499 0.90491 0.89790 1.24846 0.99341 1.00395 0.95833 1.69930 1.36677 1.45333 1.05048 0.85951 0.81022 0.79505 0.78723 1.20348 1.21620 1.21587 1.19739 0.90956 0.95626 0.85588 0.90217 0.91126 0.88521 0.90138 0.88856 0.88829 0.79915 0.76760 0.90770 0.90784 0.86302 0.86154 0.86512 0.94561 0.94638 0.93501 0.91829 0.91778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.75 9.91 36.00 0.36 -0.39 16 2 C 0.13 1.52 7.26 -82.02 -0.60 0.92 16 3 N -0.30 -3.45 12.50 33.89 0.42 -3.03 16 4 N -0.36 -3.09 3.98 -67.59 -0.27 -3.36 16 5 C 0.10 0.39 11.44 59.85 0.68 1.08 16 6 C 0.10 0.84 10.99 -16.56 -0.18 0.65 16 7 C -0.29 -3.17 6.13 -105.07 -0.64 -3.81 16 8 C 0.59 7.25 7.81 -12.52 -0.10 7.15 16 9 O -0.54 -8.18 14.92 5.28 0.08 -8.10 16 10 N -0.72 -7.57 5.54 -62.57 -0.35 -7.92 16 11 C 0.17 1.96 5.80 -5.20 -0.03 1.93 16 12 C -0.13 -1.70 5.25 -104.65 -0.55 -2.25 16 13 C -0.10 -1.37 9.70 -39.61 -0.38 -1.76 16 14 C -0.11 -1.78 10.05 -39.54 -0.40 -2.18 16 15 C -0.08 -1.57 6.22 -104.57 -0.65 -2.22 16 16 C -0.11 -1.95 6.22 -104.57 -0.65 -2.60 16 17 C -0.08 -1.23 9.70 -39.54 -0.38 -1.61 16 18 C 0.18 3.65 7.25 -5.09 -0.04 3.62 16 19 N -0.60 -15.26 3.41 -175.68 -0.60 -15.86 16 20 C -0.23 -6.14 10.32 -15.05 -0.16 -6.30 16 21 H 0.08 2.19 7.83 -52.49 -0.41 1.78 16 22 C -0.01 -0.21 5.49 -17.43 -0.10 -0.31 16 23 N -0.92 -26.28 10.44 55.49 0.58 -25.70 16 24 Si 0.92 21.47 29.55 -169.99 -5.02 16.45 16 25 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 26 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 27 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 28 C 0.21 4.92 5.39 -5.08 -0.03 4.89 16 29 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 30 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.10 1.04 6.57 -51.93 -0.34 0.70 16 32 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 33 H 0.09 0.18 8.14 -51.93 -0.42 -0.25 16 34 H 0.09 0.35 8.14 -51.93 -0.42 -0.08 16 35 H 0.18 0.84 7.46 -52.48 -0.39 0.45 16 36 H 0.40 3.44 7.39 -40.82 -0.30 3.13 16 37 H 0.07 0.85 8.09 -51.93 -0.42 0.43 16 38 H 0.07 0.87 8.08 -51.93 -0.42 0.45 16 39 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 40 H 0.12 1.74 8.06 -52.48 -0.42 1.31 16 41 H 0.12 1.51 8.06 -52.49 -0.42 1.08 16 42 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 43 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 45 H 0.06 1.66 7.49 -51.93 -0.39 1.27 16 46 H 0.06 1.69 7.49 -51.93 -0.39 1.30 16 LS Contribution 386.47 15.07 5.82 5.82 Total: -1.00 -33.97 386.47 -9.59 -43.56 By element: Atomic # 1 Polarization: 7.73 SS G_CDS: -6.43 Total: 1.30 kcal Atomic # 6 Polarization: 0.67 SS G_CDS: -3.84 Total: -3.17 kcal Atomic # 7 Polarization: -55.65 SS G_CDS: -0.21 Total: -55.86 kcal Atomic # 8 Polarization: -8.18 SS G_CDS: 0.08 Total: -8.10 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -33.97 -9.59 -43.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054258747.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.043 kcal (2) G-P(sol) polarization free energy of solvation -33.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.563 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds