Wall clock time and date at job start Tue Mar 31 2020 23:34:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30439 * 125.99278 * 2 1 4 4 N 1.39929 * 108.90076 * 180.02562 * 3 2 1 5 5 C 1.46501 * 125.75427 * 180.02562 * 4 3 2 6 6 C 1.34257 * 108.49157 * 359.97438 * 4 3 2 7 7 C 1.38042 * 107.41780 * 0.02562 * 6 4 3 8 8 C 1.47428 * 126.41835 * 180.26423 * 7 6 4 9 9 O 1.21598 * 120.00379 * 179.68712 * 8 7 6 10 10 N 1.34783 * 119.99757 * 359.68651 * 8 7 6 11 11 C 1.46496 * 119.99910 * 180.02562 * 10 8 7 12 12 C 1.50700 * 109.46961 * 179.97438 * 11 10 8 13 13 C 1.38253 * 120.01738 * 89.99976 * 12 11 10 14 14 C 1.38146 * 119.96000 * 180.02562 * 13 12 11 15 15 C 1.38442 * 120.10527 * 359.97312 * 14 13 12 16 16 C 1.38067 * 119.93527 * 0.02916 * 15 14 13 17 17 C 1.38148 * 120.02030 * 269.72497 * 12 11 10 18 18 C 1.50770 * 108.86365 * 180.02562 * 16 15 14 19 19 N 1.46637 * 107.70116 * 359.97438 * 18 16 15 20 20 C 1.36939 * 126.55956 * 180.02562 * 19 18 16 21 21 H 1.07993 * 120.00415 * 0.02562 * 20 19 18 22 22 C 1.38823 * 119.99523 * 180.02562 * 20 19 18 23 23 N 1.31613 * 119.99885 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 119.99631 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.47530 * 0.02562 * 24 22 20 26 26 H 1.48503 * 109.46897 * 120.00177 * 24 22 20 27 27 H 1.48498 * 109.46990 * 239.99996 * 24 22 20 28 28 C 1.46634 * 106.87559 * 0.02562 * 19 18 16 29 29 H 1.09000 * 109.46982 * 269.96001 * 1 2 3 30 30 H 1.09001 * 109.47371 * 29.95423 * 1 2 3 31 31 H 1.09000 * 109.47399 * 149.96059 * 1 2 3 32 32 H 1.09004 * 109.46860 * 89.98268 * 5 4 3 33 33 H 1.09005 * 109.47551 * 209.97541 * 5 4 3 34 34 H 1.08997 * 109.47830 * 329.98047 * 5 4 3 35 35 H 1.08008 * 126.29245 * 180.02562 * 6 4 3 36 36 H 0.96997 * 119.99754 * 359.97438 * 10 8 7 37 37 H 1.08999 * 109.47012 * 299.99854 * 11 10 8 38 38 H 1.08999 * 109.46984 * 59.99700 * 11 10 8 39 39 H 1.07996 * 120.02212 * 359.97438 * 13 12 11 40 40 H 1.08003 * 119.94540 * 180.02562 * 14 13 12 41 41 H 1.08000 * 119.94622 * 359.97438 * 17 12 11 42 42 H 1.08996 * 109.81833 * 119.54777 * 18 16 15 43 43 H 1.09006 * 109.81197 * 240.44869 * 18 16 15 44 44 H 0.97001 * 119.99887 * 179.97438 * 23 22 20 45 45 H 1.09000 * 109.81288 * 240.45150 * 28 19 18 46 46 H 1.08993 * 109.81009 * 119.54681 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2735 1.0554 0.0000 4 7 3.6110 0.6441 -0.0006 5 6 4.7787 1.5289 -0.0003 6 6 3.6438 -0.6981 -0.0004 7 6 2.3372 -1.1433 -0.0003 8 6 1.8914 -2.5486 0.0054 9 8 0.7038 -2.8097 0.0107 10 7 2.8002 -3.5439 0.0049 11 6 2.3573 -4.9403 0.0100 12 6 3.5597 -5.8487 0.0075 13 6 4.1162 -6.2627 1.2035 14 6 5.2188 -7.0950 1.1999 15 6 5.7673 -7.5158 0.0004 16 6 5.2116 -7.1023 -1.1940 17 6 4.1031 -6.2728 -1.1897 18 6 5.9979 -7.7033 -2.3314 19 7 7.0739 -8.5128 -1.7508 20 6 8.0173 -9.2292 -2.4378 21 1 8.0130 -9.2313 -3.5178 22 6 8.9792 -9.9526 -1.7461 23 7 8.9840 -9.9503 -0.4299 24 14 10.2656 -10.9304 -2.6833 25 1 10.0435 -10.7696 -4.1427 26 1 11.6195 -10.4320 -2.3313 27 1 10.1570 -12.3663 -2.3207 28 6 6.9463 -8.4085 -0.2937 29 1 -0.3633 -0.0007 1.0277 30 1 -0.3634 0.8904 -0.5131 31 1 -0.3634 -0.8896 -0.5144 32 1 5.0683 1.7479 1.0276 33 1 5.6059 1.0392 -0.5142 34 1 4.5309 2.4579 -0.5137 35 1 4.5297 -1.3159 -0.0003 36 1 3.7476 -3.3355 0.0003 37 1 1.7608 -5.1289 0.9025 38 1 1.7546 -5.1334 -0.8774 39 1 3.6898 -5.9349 2.1400 40 1 5.6531 -7.4186 2.1343 41 1 3.6652 -5.9531 -2.1238 42 1 5.3474 -8.3332 -2.9381 43 1 6.4234 -6.9100 -2.9461 44 1 9.6559 -10.4561 0.0534 45 1 7.8529 -7.9730 0.1263 46 1 6.7776 -9.3966 0.1340 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054258747.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:34:20 Heat of formation + Delta-G solvation = 74.752728 kcal Electronic energy + Delta-G solvation = -27837.124982 eV Core-core repulsion = 23921.172821 eV Total energy + Delta-G solvation = -3915.952161 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.40874 -41.14508 -40.05359 -37.82903 -35.73154 -34.87104 -34.09988 -32.66980 -31.77073 -31.08364 -30.30707 -28.90832 -27.70703 -26.89498 -25.71940 -23.65507 -23.30601 -22.08114 -21.50060 -21.32130 -20.66041 -18.99054 -18.75640 -17.20568 -17.07465 -16.80622 -16.74519 -16.34346 -16.07978 -16.01183 -15.72805 -15.49149 -15.24183 -14.92463 -14.61795 -14.46834 -14.32837 -14.04181 -13.51924 -13.45676 -13.41881 -13.37708 -13.25425 -13.03548 -13.02636 -12.97839 -12.92807 -12.71565 -12.04875 -11.96489 -11.89581 -11.81965 -11.60973 -11.01101 -10.84472 -10.37313 -10.10905 -9.69562 -9.58342 -9.56026 -8.83831 -7.93438 -5.30042 0.30307 0.48136 0.53676 1.11353 1.46412 1.47196 1.47748 1.58445 2.32452 2.44793 2.48539 2.91430 3.29161 3.40672 3.49349 3.55746 3.72361 3.84513 3.99398 4.08190 4.16402 4.27140 4.40457 4.41556 4.43842 4.48332 4.54336 4.69729 4.71301 4.78181 4.80446 4.82953 4.85909 4.99659 5.00679 5.02260 5.21078 5.30896 5.33858 5.45490 5.48668 5.53442 5.54767 5.61090 5.88912 5.89939 6.07677 6.10509 6.51800 6.70060 7.01049 7.34413 7.65887 8.33620 9.19876 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.018162 B = 0.002039 C = 0.001929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1541.289323 B =13732.223803 C =14509.385672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.114 3.886 3 N -0.333 5.333 4 N -0.360 5.360 5 C 0.085 3.915 6 C 0.121 3.879 7 C -0.318 4.318 8 C 0.596 3.404 9 O -0.579 6.579 10 N -0.713 5.713 11 C 0.178 3.822 12 C -0.106 4.106 13 C -0.087 4.087 14 C -0.111 4.111 15 C -0.112 4.112 16 C -0.116 4.116 17 C -0.075 4.075 18 C 0.171 3.829 19 N -0.625 5.625 20 C -0.242 4.242 21 H 0.090 0.910 22 C -0.065 4.065 23 N -0.952 5.952 24 Si 0.987 3.013 25 H -0.263 1.263 26 H -0.289 1.289 27 H -0.291 1.291 28 C 0.221 3.779 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.094 0.906 33 H 0.121 0.879 34 H 0.095 0.905 35 H 0.222 0.778 36 H 0.410 0.590 37 H 0.081 0.919 38 H 0.075 0.925 39 H 0.154 0.846 40 H 0.130 0.870 41 H 0.140 0.860 42 H 0.039 0.961 43 H 0.044 0.956 44 H 0.250 0.750 45 H 0.025 0.975 46 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.113 21.869 3.313 24.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.053 4.053 3 N -0.156 5.156 4 N -0.137 5.137 5 C -0.054 4.054 6 C -0.032 4.032 7 C -0.333 4.333 8 C 0.385 3.615 9 O -0.460 6.460 10 N -0.364 5.364 11 C 0.055 3.945 12 C -0.107 4.107 13 C -0.105 4.105 14 C -0.129 4.129 15 C -0.113 4.113 16 C -0.117 4.117 17 C -0.094 4.094 18 C 0.046 3.954 19 N -0.352 5.352 20 C -0.370 4.370 21 H 0.108 0.892 22 C -0.258 4.258 23 N -0.601 5.601 24 Si 0.814 3.186 25 H -0.187 1.187 26 H -0.216 1.216 27 H -0.218 1.218 28 C 0.096 3.904 29 H 0.102 0.898 30 H 0.099 0.901 31 H 0.102 0.898 32 H 0.112 0.888 33 H 0.140 0.860 34 H 0.113 0.887 35 H 0.239 0.761 36 H 0.246 0.754 37 H 0.100 0.900 38 H 0.093 0.907 39 H 0.172 0.828 40 H 0.148 0.852 41 H 0.158 0.842 42 H 0.057 0.943 43 H 0.061 0.939 44 H 0.060 0.940 45 H 0.043 0.957 46 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -11.593 22.946 3.316 25.921 hybrid contribution 1.590 -1.742 -0.275 2.374 sum -10.003 21.204 3.040 23.641 Atomic orbital electron populations 1.20302 0.85333 1.03823 1.03740 1.22747 0.97977 0.89217 0.95327 1.77133 0.87467 1.23172 1.27811 1.48692 1.06182 1.05597 1.53197 1.22411 0.82920 0.94667 1.05378 1.23668 0.99259 0.85455 0.94866 1.20270 0.93315 0.93745 1.26004 1.17373 0.85146 0.84044 0.74958 1.90720 1.17755 1.84791 1.52752 1.45798 1.10097 1.05111 1.75423 1.20008 0.92733 0.78399 1.03356 1.19630 0.97961 1.00417 0.92651 1.21152 0.94470 0.96233 0.98659 1.20675 0.97099 0.98825 0.96293 1.21176 0.97231 0.97711 0.95142 1.20551 0.97006 0.98995 0.95130 1.20499 0.93681 0.96160 0.99018 1.19810 0.88877 0.93227 0.93480 1.44277 1.32551 1.56209 1.02126 1.19437 1.04857 1.21638 0.91116 0.89177 1.25759 1.01576 1.01745 0.96764 1.70158 1.37259 1.46113 1.06521 0.84891 0.78029 0.77461 0.78205 1.18699 1.21615 1.21812 1.19278 0.91820 0.94498 0.84820 0.89838 0.90139 0.89841 0.88786 0.86039 0.88676 0.76129 0.75418 0.90042 0.90684 0.82808 0.85218 0.84228 0.94280 0.93854 0.94036 0.95677 0.95997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.41 9.91 71.24 0.71 -0.71 16 2 C 0.11 2.52 7.26 43.52 0.32 2.83 16 3 N -0.33 -7.11 12.50 -46.68 -0.58 -7.70 16 4 N -0.36 -5.20 3.98 -367.77 -1.46 -6.67 16 5 C 0.09 0.44 11.44 127.77 1.46 1.90 16 6 C 0.12 1.58 10.99 84.28 0.93 2.51 16 7 C -0.32 -6.34 6.13 -20.15 -0.12 -6.46 16 8 C 0.60 13.22 7.81 86.66 0.68 13.90 16 9 O -0.58 -16.67 14.92 -4.02 -0.06 -16.73 16 10 N -0.71 -12.34 5.54 -470.11 -2.60 -14.94 16 11 C 0.18 3.36 5.80 85.63 0.50 3.86 16 12 C -0.11 -2.33 5.25 -19.88 -0.10 -2.43 16 13 C -0.09 -1.97 9.70 22.25 0.22 -1.75 16 14 C -0.11 -3.33 10.05 22.30 0.22 -3.11 16 15 C -0.11 -4.35 6.22 -19.83 -0.12 -4.47 16 16 C -0.12 -4.14 6.22 -19.83 -0.12 -4.27 16 17 C -0.07 -1.97 9.70 22.30 0.22 -1.75 16 18 C 0.17 7.17 7.25 85.63 0.62 7.79 16 19 N -0.63 -32.95 3.41 -709.71 -2.42 -35.37 16 20 C -0.24 -13.58 10.32 84.04 0.87 -12.71 16 21 H 0.09 4.77 7.83 -2.91 -0.02 4.74 16 22 C -0.07 -3.69 5.49 84.87 0.47 -3.22 16 23 N -0.95 -56.84 10.44 21.65 0.23 -56.61 16 24 Si 0.99 45.02 29.55 68.60 2.03 47.04 16 25 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 26 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 27 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 28 C 0.22 11.21 5.39 85.63 0.46 11.67 16 29 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.08 1.82 6.57 -2.39 -0.02 1.80 16 32 H 0.09 0.27 8.14 -2.38 -0.02 0.25 16 33 H 0.12 -0.04 8.14 -2.38 -0.02 -0.06 16 34 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16 35 H 0.22 0.95 7.46 -2.91 -0.02 0.93 16 36 H 0.41 5.26 7.39 -92.71 -0.68 4.58 16 37 H 0.08 1.52 8.09 -2.39 -0.02 1.50 16 38 H 0.07 1.49 8.08 -2.39 -0.02 1.47 16 39 H 0.15 2.53 8.06 -2.91 -0.02 2.50 16 40 H 0.13 3.60 8.06 -2.91 -0.02 3.58 16 41 H 0.14 3.07 8.06 -2.91 -0.02 3.04 16 42 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 43 H 0.04 1.74 8.14 -2.38 -0.02 1.72 16 44 H 0.25 14.40 8.31 -92.71 -0.77 13.63 16 45 H 0.03 1.42 7.49 -2.39 -0.02 1.40 16 46 H 0.02 1.26 7.49 -2.39 -0.02 1.24 16 Total: -1.00 -78.40 386.47 2.63 -75.76 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: 0.32 Total: 11.65 kcal Atomic # 6 Polarization: -3.61 SS G_CDS: 7.18 Total: 3.57 kcal Atomic # 7 Polarization: -114.45 SS G_CDS: -6.84 Total: -121.29 kcal Atomic # 8 Polarization: -16.67 SS G_CDS: -0.06 Total: -16.73 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.04 kcal Total: -78.40 2.63 -75.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054258747.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.516 kcal (2) G-P(sol) polarization free energy of solvation -78.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.764 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds