Wall clock time and date at job start Tue Mar 31 2020 23:49:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.39668 * 127.31760 * 2 1 4 4 N 1.30870 * 107.85527 * 180.23886 * 3 2 1 5 5 N 1.28439 * 110.93377 * 359.77151 * 4 3 2 6 6 C 1.46494 * 125.19507 * 180.02562 * 5 4 3 7 7 C 1.36603 * 109.61356 * 0.02562 * 5 4 3 8 8 C 1.47167 * 126.88083 * 179.97438 * 7 5 4 9 9 O 1.21618 * 120.00240 * 99.43674 * 8 7 5 10 10 N 1.34779 * 119.99515 * 279.43399 * 8 7 5 11 11 C 1.46502 * 119.99550 * 174.85019 * 10 8 7 12 12 C 1.50705 * 109.47253 * 180.02562 * 11 10 8 13 13 C 1.38253 * 120.01770 * 270.21871 * 12 11 10 14 14 C 1.38154 * 119.95746 * 180.23273 * 13 12 11 15 15 C 1.38444 * 120.09966 * 359.52784 * 14 13 12 16 16 C 1.38062 * 119.93953 * 0.25699 * 15 14 13 17 17 C 1.38143 * 120.01585 * 89.99705 * 12 11 10 18 18 C 1.50779 * 108.86158 * 179.97438 * 16 15 14 19 19 N 1.46633 * 107.70047 * 0.02562 * 18 16 15 20 20 C 1.36945 * 126.56127 * 180.02562 * 19 18 16 21 21 H 1.08001 * 119.99416 * 359.97438 * 20 19 18 22 22 C 1.38807 * 119.99968 * 179.97438 * 20 19 18 23 23 N 1.31624 * 120.00046 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 120.00088 * 179.97438 * 22 20 19 25 25 H 1.48505 * 109.46868 * 90.00024 * 24 22 20 26 26 H 1.48495 * 109.47122 * 210.00234 * 24 22 20 27 27 H 1.48504 * 109.46769 * 330.00380 * 24 22 20 28 28 C 1.46633 * 106.87439 * 0.02562 * 19 18 16 29 29 H 1.08998 * 109.46756 * 270.13991 * 1 2 3 30 30 H 1.08994 * 109.46775 * 30.14192 * 1 2 3 31 31 H 1.09000 * 109.47076 * 150.14140 * 1 2 3 32 32 H 1.08000 * 126.07510 * 0.04606 * 3 2 1 33 33 H 1.09003 * 109.47069 * 274.84860 * 6 5 4 34 34 H 1.08996 * 109.47073 * 34.84281 * 6 5 4 35 35 H 1.08996 * 109.47619 * 154.84962 * 6 5 4 36 36 H 0.96994 * 120.00581 * 354.85668 * 10 8 7 37 37 H 1.09006 * 109.47155 * 60.00335 * 11 10 8 38 38 H 1.09006 * 109.47442 * 300.00553 * 11 10 8 39 39 H 1.07993 * 120.02035 * 0.04089 * 13 12 11 40 40 H 1.07991 * 119.94773 * 179.80745 * 14 13 12 41 41 H 1.08002 * 119.95036 * 0.02859 * 17 12 11 42 42 H 1.09001 * 109.80889 * 119.54722 * 18 16 15 43 43 H 1.08995 * 109.81208 * 240.44882 * 18 16 15 44 44 H 0.96993 * 119.99995 * 179.97438 * 23 22 20 45 45 H 1.09008 * 109.80674 * 240.45223 * 28 19 18 46 46 H 1.09001 * 109.81349 * 119.55202 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3538 1.1108 0.0000 4 7 3.5877 0.6747 -0.0052 5 7 3.6207 -0.6092 -0.0038 6 6 4.8391 -1.4225 -0.0079 7 6 2.3461 -1.1007 0.0022 8 6 1.9456 -2.5168 0.0051 9 8 1.6184 -3.0541 1.0459 10 7 1.9412 -3.2181 -1.1458 11 6 1.6522 -4.6543 -1.1273 12 6 1.7103 -5.1966 -2.5322 13 6 0.5719 -5.2084 -3.3166 14 6 0.6254 -5.7103 -4.6026 15 6 1.8196 -6.1925 -5.1106 16 6 2.9574 -6.1765 -4.3288 17 6 2.9021 -5.6779 -3.0385 18 6 4.1021 -6.7544 -5.1221 19 7 3.5864 -7.1246 -6.4439 20 6 4.2993 -7.6850 -7.4701 21 1 5.3513 -7.8953 -7.3449 22 6 3.6700 -7.9826 -8.6710 23 7 2.3882 -7.7258 -8.8236 24 14 4.6427 -8.7462 -10.0711 25 1 4.5884 -10.2263 -9.9619 26 1 4.0573 -8.3237 -11.3687 27 1 6.0558 -8.2958 -9.9954 28 6 2.1611 -6.7801 -6.4565 29 1 -0.3633 0.0025 1.0277 30 1 -0.3633 0.8887 -0.5160 31 1 -0.3633 -0.8913 -0.5116 32 1 2.0451 2.1457 0.0007 33 1 5.1852 -1.5533 -1.0332 34 1 5.6120 -0.9221 0.5754 35 1 4.6268 -2.3974 0.4309 36 1 2.1295 -2.7722 -1.9864 37 1 0.6569 -4.8193 -0.7146 38 1 2.3909 -5.1656 -0.5100 39 1 -0.3593 -4.8285 -2.9232 40 1 -0.2646 -5.7223 -5.2141 41 1 3.7920 -5.6656 -2.4265 42 1 4.8906 -6.0095 -5.2290 43 1 4.4929 -7.6375 -4.6169 44 1 1.9485 -7.9334 -9.6629 45 1 1.5658 -7.6769 -6.6289 46 1 1.9647 -6.0489 -7.2406 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054277110.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:49:53 Heat of formation + Delta-G solvation = 101.022345 kcal Electronic energy + Delta-G solvation = -28217.763326 eV Core-core repulsion = 24302.950301 eV Total energy + Delta-G solvation = -3914.813025 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.79675 -40.04001 -39.34835 -36.47034 -34.67868 -34.29880 -32.50859 -32.11166 -31.21473 -29.86599 -28.80209 -27.47490 -26.46398 -26.07062 -24.74238 -22.79845 -22.08775 -21.24445 -20.50953 -20.43205 -19.90235 -18.22381 -17.08931 -16.84450 -16.18787 -15.99500 -15.60312 -15.47172 -14.89477 -14.67171 -14.43340 -14.33959 -14.13972 -13.77033 -13.70101 -13.61658 -13.26417 -13.10657 -12.95105 -12.78131 -12.55028 -12.42866 -12.05493 -11.93112 -11.76611 -11.63381 -11.13693 -10.93985 -10.88707 -10.57859 -10.50247 -10.29174 -10.19380 -9.86156 -9.46569 -9.41717 -9.02682 -8.96594 -8.51184 -8.10767 -6.92485 -5.87754 -3.21359 1.28846 1.52358 1.65564 1.81335 2.38199 2.46871 3.00280 3.33278 3.37998 3.40225 4.02275 4.13913 4.33054 4.35468 4.60510 4.71698 4.73654 4.82269 4.87618 4.99800 5.08341 5.15363 5.21504 5.31523 5.37328 5.38458 5.42562 5.49198 5.52138 5.68204 5.76660 5.78506 5.93295 6.00819 6.02400 6.26493 6.40637 6.42785 6.45435 6.47601 6.66857 6.69019 6.96858 7.10834 7.25592 7.26344 7.45404 7.62367 7.74250 7.77466 8.06766 9.04944 9.64816 10.31293 11.26372 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.018508 B = 0.002148 C = 0.002075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1512.494402 B =13031.896092 C =13492.349974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.156 4.156 3 C 0.004 3.996 4 N -0.282 5.282 5 N -0.272 5.272 6 C 0.086 3.914 7 C -0.034 4.034 8 C 0.592 3.408 9 O -0.521 6.521 10 N -0.710 5.710 11 C 0.169 3.831 12 C -0.135 4.135 13 C -0.101 4.101 14 C -0.112 4.112 15 C -0.078 4.078 16 C -0.107 4.107 17 C -0.083 4.083 18 C 0.176 3.824 19 N -0.600 5.600 20 C -0.228 4.228 21 H 0.084 0.916 22 C -0.006 4.006 23 N -0.923 5.923 24 Si 0.918 3.082 25 H -0.287 1.287 26 H -0.289 1.289 27 H -0.280 1.280 28 C 0.205 3.795 29 H 0.070 0.930 30 H 0.072 0.928 31 H 0.063 0.937 32 H 0.186 0.814 33 H 0.090 0.910 34 H 0.099 0.901 35 H 0.092 0.908 36 H 0.407 0.593 37 H 0.079 0.921 38 H 0.076 0.924 39 H 0.120 0.880 40 H 0.122 0.878 41 H 0.116 0.884 42 H 0.036 0.964 43 H 0.037 0.963 44 H 0.256 0.744 45 H 0.065 0.935 46 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.267 13.648 17.214 22.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.167 4.167 3 C -0.173 4.173 4 N -0.113 5.113 5 N -0.061 5.061 6 C -0.055 4.055 7 C -0.163 4.163 8 C 0.375 3.625 9 O -0.396 6.396 10 N -0.362 5.362 11 C 0.047 3.953 12 C -0.135 4.135 13 C -0.120 4.120 14 C -0.130 4.130 15 C -0.079 4.079 16 C -0.107 4.107 17 C -0.102 4.102 18 C 0.050 3.950 19 N -0.327 5.327 20 C -0.355 4.355 21 H 0.102 0.898 22 C -0.203 4.203 23 N -0.570 5.570 24 Si 0.748 3.252 25 H -0.214 1.214 26 H -0.215 1.215 27 H -0.205 1.205 28 C 0.080 3.920 29 H 0.089 0.911 30 H 0.091 0.909 31 H 0.082 0.918 32 H 0.203 0.797 33 H 0.108 0.892 34 H 0.117 0.883 35 H 0.111 0.889 36 H 0.242 0.758 37 H 0.097 0.903 38 H 0.095 0.905 39 H 0.138 0.862 40 H 0.140 0.860 41 H 0.134 0.866 42 H 0.054 0.946 43 H 0.054 0.946 44 H 0.066 0.934 45 H 0.083 0.917 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -1.233 13.392 17.731 22.254 hybrid contribution -0.218 -0.459 -1.199 1.303 sum -1.452 12.933 16.531 21.040 Atomic orbital electron populations 1.20132 0.88294 1.02714 1.02444 1.20707 0.96934 0.90688 1.08332 1.23458 0.87689 0.99947 1.06194 1.73147 1.24504 0.93197 1.20447 1.45536 1.05464 1.03745 1.51325 1.22211 0.83825 0.94522 1.04911 1.21338 0.86147 0.94666 1.14102 1.17023 0.78078 0.83381 0.84048 1.90854 1.47160 1.69748 1.31804 1.46234 1.70767 1.09931 1.09275 1.20204 1.02277 0.78849 0.93962 1.19410 0.94265 1.04640 0.95226 1.20834 0.97453 0.99805 0.93895 1.20517 0.97248 0.99913 0.95352 1.21568 0.92990 0.94697 0.98687 1.20730 0.97294 0.98834 0.93881 1.20282 0.96869 0.98828 0.94255 1.19705 0.92450 0.96389 0.86468 1.43956 1.05624 1.73275 1.09847 1.18977 0.92732 1.33575 0.90212 0.89837 1.24843 0.96232 1.01192 0.98039 1.69916 1.08800 1.52667 1.25594 0.86021 0.78836 0.78926 0.81391 1.21397 1.21512 1.20531 1.19757 0.86070 0.98339 0.87814 0.91093 0.90895 0.91831 0.79694 0.89200 0.88256 0.88904 0.75829 0.90290 0.90539 0.86217 0.86020 0.86575 0.94648 0.94563 0.93410 0.91713 0.91710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.62 10.28 36.01 0.37 -0.25 16 2 C -0.16 -1.59 6.30 -104.02 -0.65 -2.25 16 3 C 0.00 0.04 12.00 -17.43 -0.21 -0.17 16 4 N -0.28 -3.16 11.90 30.59 0.36 -2.80 16 5 N -0.27 -2.84 3.75 -63.89 -0.24 -3.08 16 6 C 0.09 0.60 11.21 59.84 0.67 1.27 16 7 C -0.03 -0.38 6.71 -82.06 -0.55 -0.93 16 8 C 0.59 6.87 6.77 -12.63 -0.09 6.78 16 9 O -0.52 -7.72 17.12 5.26 0.09 -7.63 16 10 N -0.71 -7.04 5.54 -62.64 -0.35 -7.39 16 11 C 0.17 1.76 5.80 -5.19 -0.03 1.73 16 12 C -0.13 -1.66 5.25 -104.65 -0.55 -2.21 16 13 C -0.10 -1.31 9.70 -39.61 -0.38 -1.69 16 14 C -0.11 -1.75 10.05 -39.54 -0.40 -2.14 16 15 C -0.08 -1.50 6.22 -104.57 -0.65 -2.15 16 16 C -0.11 -1.91 6.22 -104.57 -0.65 -2.56 16 17 C -0.08 -1.17 9.70 -39.54 -0.38 -1.55 16 18 C 0.18 3.60 7.25 -5.08 -0.04 3.57 16 19 N -0.60 -15.13 3.41 -175.67 -0.60 -15.73 16 20 C -0.23 -6.16 10.32 -15.06 -0.16 -6.32 16 21 H 0.08 2.16 7.83 -52.49 -0.41 1.75 16 22 C -0.01 -0.18 5.49 -17.43 -0.10 -0.27 16 23 N -0.92 -26.20 10.45 55.49 0.58 -25.62 16 24 Si 0.92 21.40 29.55 -169.99 -5.02 16.38 16 25 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16 26 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 27 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 28 C 0.20 4.87 5.39 -5.08 -0.03 4.84 16 29 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.52 8.07 -51.93 -0.42 0.11 16 32 H 0.19 1.20 8.06 -52.49 -0.42 0.78 16 33 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.09 0.60 7.66 -51.93 -0.40 0.20 16 36 H 0.41 3.72 8.45 -40.82 -0.34 3.38 16 37 H 0.08 0.82 8.09 -51.93 -0.42 0.40 16 38 H 0.08 0.78 8.09 -51.93 -0.42 0.36 16 39 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 40 H 0.12 1.73 8.06 -52.49 -0.42 1.31 16 41 H 0.12 1.38 8.06 -52.49 -0.42 0.95 16 42 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 45 H 0.07 1.70 7.49 -51.92 -0.39 1.31 16 46 H 0.07 1.69 7.49 -51.93 -0.39 1.30 16 LS Contribution 390.25 15.07 5.88 5.88 Total: -1.00 -32.91 390.25 -9.67 -42.57 By element: Atomic # 1 Polarization: 8.27 SS G_CDS: -6.55 Total: 1.72 kcal Atomic # 6 Polarization: -0.48 SS G_CDS: -3.82 Total: -4.30 kcal Atomic # 7 Polarization: -54.38 SS G_CDS: -0.24 Total: -54.62 kcal Atomic # 8 Polarization: -7.72 SS G_CDS: 0.09 Total: -7.63 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -32.91 -9.67 -42.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054277110.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.597 kcal (2) G-P(sol) polarization free energy of solvation -32.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.575 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds