Wall clock time and date at job start Tue Mar 31 2020 23:59:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30850 * 125.42085 * 2 1 4 4 C 1.33319 * 109.68636 * 179.74296 * 3 2 1 5 5 C 1.36660 * 107.78505 * 0.37815 * 4 3 2 6 6 C 1.46766 * 126.84270 * 179.89548 * 5 4 3 7 7 O 1.21684 * 119.99931 * 185.01685 * 6 5 4 8 8 N 1.34775 * 120.00028 * 5.01668 * 6 5 4 9 9 C 1.46507 * 119.99707 * 174.64590 * 8 6 5 10 10 C 1.50702 * 109.46841 * 180.02562 * 9 8 6 11 11 C 1.38251 * 120.01965 * 270.21366 * 10 9 8 12 12 C 1.38148 * 119.96242 * 180.23473 * 11 10 9 13 13 C 1.38443 * 120.10045 * 359.53219 * 12 11 10 14 14 C 1.38071 * 119.93799 * 0.25515 * 13 12 11 15 15 C 1.38151 * 120.01846 * 90.00031 * 10 9 8 16 16 C 1.50779 * 108.86286 * 180.02562 * 14 13 12 17 17 N 1.46629 * 107.70143 * 359.97438 * 16 14 13 18 18 C 1.36938 * 126.56534 * 180.02562 * 17 16 14 19 19 H 1.08006 * 119.99592 * 359.97438 * 18 17 16 20 20 C 1.38808 * 120.00402 * 180.02562 * 18 17 16 21 21 N 1.31618 * 120.00023 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 120.00167 * 179.97438 * 20 18 17 23 23 H 1.48491 * 109.47119 * 89.99687 * 22 20 18 24 24 H 1.48503 * 109.46997 * 210.00104 * 22 20 18 25 25 H 1.48504 * 109.46863 * 329.99545 * 22 20 18 26 26 C 1.46637 * 106.87668 * 0.02562 * 17 16 14 27 27 N 1.34502 * 125.41430 * 179.97438 * 2 1 3 28 28 C 1.46497 * 126.47408 * 0.02562 * 27 2 1 29 29 H 1.08999 * 109.47487 * 270.02322 * 1 2 3 30 30 H 1.09007 * 109.46984 * 30.02654 * 1 2 3 31 31 H 1.08999 * 109.47040 * 150.02047 * 1 2 3 32 32 H 1.08007 * 126.10699 * 180.27675 * 4 3 2 33 33 H 0.96994 * 119.99945 * 354.65200 * 8 6 5 34 34 H 1.08993 * 109.46927 * 60.00046 * 9 8 6 35 35 H 1.09000 * 109.46914 * 299.99970 * 9 8 6 36 36 H 1.07994 * 120.01893 * 0.04739 * 11 10 9 37 37 H 1.07993 * 119.94807 * 179.80814 * 12 11 10 38 38 H 1.08005 * 119.94530 * 0.02562 * 15 10 9 39 39 H 1.08991 * 109.81469 * 119.54541 * 16 14 13 40 40 H 1.08999 * 109.80897 * 240.45341 * 16 14 13 41 41 H 0.97000 * 119.99891 * 179.97438 * 21 20 18 42 42 H 1.09001 * 109.81390 * 240.45219 * 26 17 16 43 43 H 1.08997 * 109.81315 * 119.55039 * 26 17 16 44 44 H 1.09004 * 109.46812 * 272.99560 * 28 27 2 45 45 H 1.08996 * 109.47017 * 32.99905 * 28 27 2 46 46 H 1.08999 * 109.47216 * 152.99918 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2654 1.0663 0.0000 4 6 3.5486 0.7048 0.0056 5 6 3.5975 -0.6609 0.0008 6 6 4.8028 -1.4984 0.0021 7 8 4.7038 -2.7073 -0.0949 8 7 6.0193 -0.9284 0.1106 9 6 7.2137 -1.7683 0.2300 10 6 8.4352 -0.8922 0.3369 11 6 9.1051 -0.4969 -0.8061 12 6 10.2275 0.3022 -0.7064 13 6 10.6772 0.7160 0.5358 14 6 10.0057 0.3248 1.6771 15 6 8.8837 -0.4800 1.5769 16 6 10.7027 0.9121 2.8782 17 7 11.8477 1.6893 2.3935 18 6 12.7446 2.3850 3.1596 19 1 12.6430 2.3948 4.2348 20 6 13.7836 3.0784 2.5542 21 7 13.9071 3.0669 1.2439 22 14 15.0066 4.0279 3.5993 23 1 16.1408 3.1409 3.9626 24 1 15.5153 5.1924 2.8308 25 1 14.3359 4.5053 4.8352 26 6 11.8486 1.5791 0.9312 27 7 2.2864 -1.0962 0.0005 28 6 1.8310 -2.4886 0.0006 29 1 -0.3634 0.0004 1.0276 30 1 -0.3633 0.8898 -0.5143 31 1 -0.3633 -0.8902 -0.5135 32 1 4.3978 1.3721 0.0112 33 1 6.1039 0.0379 0.1098 34 1 7.2991 -2.4057 -0.6500 35 1 7.1333 -2.3895 1.1221 36 1 8.7528 -0.8152 -1.7761 37 1 10.7524 0.6083 -1.5992 38 1 8.3585 -0.7864 2.4694 39 1 10.0176 1.5628 3.4215 40 1 11.0500 0.1119 3.5317 41 1 14.6330 3.5517 0.8209 42 1 12.7773 1.1173 0.5961 43 1 11.7455 2.5687 0.4861 44 1 1.6666 -2.8170 1.0269 45 1 0.8991 -2.5660 -0.5594 46 1 2.5885 -3.1186 -0.4656 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054278814.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:59:15 Heat of formation + Delta-G solvation = 82.429295 kcal Electronic energy + Delta-G solvation = -27866.826031 eV Core-core repulsion = 23951.206751 eV Total energy + Delta-G solvation = -3915.619280 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.58583 -39.94896 -39.23603 -36.42887 -34.91145 -34.16883 -32.52719 -32.13620 -31.19535 -29.84898 -28.46772 -27.45882 -26.87777 -25.93782 -24.51736 -22.99491 -22.05784 -20.80226 -20.45582 -20.37649 -19.88721 -18.09322 -17.04647 -16.59114 -16.47337 -16.05693 -15.56408 -15.33619 -14.79349 -14.54636 -14.46570 -14.28255 -14.22009 -14.03138 -13.72956 -13.49555 -13.31826 -13.18593 -13.04695 -12.85036 -12.74517 -12.46703 -11.98511 -11.87230 -11.70885 -11.58180 -11.10002 -10.86277 -10.69387 -10.51049 -10.25515 -10.16986 -10.13453 -10.04417 -9.82130 -9.36687 -8.98338 -8.75671 -8.45462 -8.06002 -6.88175 -5.83977 -3.17320 0.98896 1.49910 1.71277 2.17033 2.48070 3.07795 3.15977 3.36170 3.40865 3.43070 3.96769 4.09153 4.33650 4.38572 4.40145 4.58369 4.69383 4.75937 4.93293 4.93423 5.04441 5.10361 5.18262 5.21123 5.27949 5.39272 5.41018 5.44984 5.54747 5.58307 5.80464 5.83736 5.99232 6.07063 6.11571 6.20376 6.46304 6.51252 6.53028 6.67607 6.72922 6.74704 7.02210 7.22093 7.30058 7.32005 7.49889 7.58736 7.66421 7.90482 8.10742 9.08879 9.68743 10.35519 11.30150 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.021541 B = 0.001946 C = 0.001868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.529364 B =14388.171243 C =14989.375039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.226 3.774 3 N -0.493 5.493 4 C 0.044 3.956 5 C -0.090 4.090 6 C 0.595 3.405 7 O -0.551 6.551 8 N -0.709 5.709 9 C 0.174 3.826 10 C -0.135 4.135 11 C -0.102 4.102 12 C -0.112 4.112 13 C -0.079 4.079 14 C -0.107 4.107 15 C -0.082 4.082 16 C 0.175 3.825 17 N -0.601 5.601 18 C -0.226 4.226 19 H 0.084 0.916 20 C -0.007 4.007 21 N -0.923 5.923 22 Si 0.918 3.082 23 H -0.287 1.287 24 H -0.289 1.289 25 H -0.280 1.280 26 C 0.205 3.795 27 N -0.425 5.425 28 C 0.063 3.937 29 H 0.085 0.915 30 H 0.094 0.906 31 H 0.076 0.924 32 H 0.180 0.820 33 H 0.406 0.594 34 H 0.077 0.923 35 H 0.075 0.925 36 H 0.119 0.881 37 H 0.121 0.879 38 H 0.117 0.883 39 H 0.037 0.963 40 H 0.037 0.963 41 H 0.255 0.745 42 H 0.065 0.935 43 H 0.065 0.935 44 H 0.080 0.920 45 H 0.086 0.914 46 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.517 -10.107 -5.077 27.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.036 4.036 3 N -0.212 5.212 4 C -0.111 4.111 5 C -0.206 4.206 6 C 0.382 3.618 7 O -0.430 6.430 8 N -0.360 5.360 9 C 0.052 3.948 10 C -0.135 4.135 11 C -0.120 4.120 12 C -0.131 4.131 13 C -0.080 4.080 14 C -0.107 4.107 15 C -0.101 4.101 16 C 0.050 3.950 17 N -0.327 5.327 18 C -0.354 4.354 19 H 0.102 0.898 20 C -0.204 4.204 21 N -0.570 5.570 22 Si 0.748 3.252 23 H -0.214 1.214 24 H -0.215 1.215 25 H -0.205 1.205 26 C 0.080 3.920 27 N -0.105 5.105 28 C -0.079 4.079 29 H 0.103 0.897 30 H 0.113 0.887 31 H 0.094 0.906 32 H 0.198 0.802 33 H 0.241 0.759 34 H 0.095 0.905 35 H 0.094 0.906 36 H 0.137 0.863 37 H 0.139 0.861 38 H 0.135 0.865 39 H 0.054 0.946 40 H 0.054 0.946 41 H 0.066 0.934 42 H 0.082 0.918 43 H 0.083 0.917 44 H 0.098 0.902 45 H 0.105 0.895 46 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -24.714 -10.232 -5.137 27.237 hybrid contribution 1.121 0.130 0.468 1.222 sum -23.593 -10.103 -4.669 26.086 Atomic orbital electron populations 1.20283 0.84328 1.04377 1.03962 1.23476 0.95976 0.81158 1.03020 1.70126 1.02159 1.28052 1.20845 1.22702 0.95279 0.91268 1.01875 1.20711 0.85310 0.94917 1.19692 1.16752 0.82108 0.86505 0.76415 1.90770 1.86841 1.14232 1.51176 1.45816 1.05127 1.11075 1.73998 1.20137 0.80454 0.91497 1.02712 1.19420 0.97960 1.02564 0.93583 1.20827 0.95604 0.98199 0.97395 1.20504 0.96838 0.98981 0.96741 1.21567 0.97594 0.95873 0.92954 1.20727 0.95288 0.97492 0.97208 1.20304 0.95702 0.97496 0.96616 1.19707 0.89435 0.93819 0.92076 1.43954 1.29002 1.58022 1.01730 1.18978 1.03488 1.23073 0.89832 0.89843 1.24842 0.98984 1.00501 0.96050 1.69919 1.33340 1.46255 1.07485 0.86020 0.80994 0.79188 0.78969 1.21445 1.21543 1.20531 1.19753 0.91240 0.96002 0.84961 1.45073 1.05115 1.08335 1.52021 1.22322 1.02440 0.78944 1.04157 0.89651 0.88688 0.90559 0.80246 0.75859 0.90482 0.90636 0.86267 0.86063 0.86503 0.94556 0.94586 0.93445 0.91756 0.91712 0.90167 0.89543 0.87327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.35 10.18 36.01 0.37 0.01 16 2 C 0.23 2.14 7.88 -155.61 -1.23 0.91 16 3 N -0.49 -5.79 11.20 -10.58 -0.12 -5.91 16 4 C 0.04 0.47 11.37 -17.48 -0.20 0.27 16 5 C -0.09 -1.00 6.91 -82.14 -0.57 -1.57 16 6 C 0.60 7.07 7.78 -12.82 -0.10 6.97 16 7 O -0.55 -7.76 14.81 5.20 0.08 -7.68 16 8 N -0.71 -7.41 5.53 -62.77 -0.35 -7.76 16 9 C 0.17 1.93 5.80 -5.19 -0.03 1.90 16 10 C -0.13 -1.73 5.25 -104.65 -0.55 -2.28 16 11 C -0.10 -1.35 9.70 -39.61 -0.38 -1.74 16 12 C -0.11 -1.79 10.05 -39.54 -0.40 -2.19 16 13 C -0.08 -1.54 6.22 -104.57 -0.65 -2.19 16 14 C -0.11 -1.96 6.22 -104.57 -0.65 -2.62 16 15 C -0.08 -1.21 9.70 -39.54 -0.38 -1.59 16 16 C 0.18 3.69 7.25 -5.08 -0.04 3.65 16 17 N -0.60 -15.36 3.41 -175.68 -0.60 -15.96 16 18 C -0.23 -6.21 10.32 -15.06 -0.16 -6.36 16 19 H 0.08 2.19 7.83 -52.48 -0.41 1.78 16 20 C -0.01 -0.20 5.49 -17.43 -0.10 -0.30 16 21 N -0.92 -26.47 10.44 55.49 0.58 -25.89 16 22 Si 0.92 21.66 29.55 -169.99 -5.02 16.63 16 23 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 24 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 25 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 26 C 0.20 4.95 5.39 -5.08 -0.03 4.92 16 27 N -0.42 -4.13 3.17 -117.28 -0.37 -4.50 16 28 C 0.06 0.42 10.57 59.85 0.63 1.06 16 29 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.09 0.44 8.14 -51.92 -0.42 0.02 16 31 H 0.08 0.22 7.09 -51.93 -0.37 -0.15 16 32 H 0.18 1.52 7.47 -52.48 -0.39 1.13 16 33 H 0.41 3.72 7.41 -40.82 -0.30 3.41 16 34 H 0.08 0.84 8.09 -51.93 -0.42 0.42 16 35 H 0.08 0.84 8.08 -51.93 -0.42 0.42 16 36 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 37 H 0.12 1.76 8.06 -52.49 -0.42 1.34 16 38 H 0.12 1.50 8.06 -52.48 -0.42 1.08 16 39 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 41 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 42 H 0.06 1.71 7.49 -51.93 -0.39 1.32 16 43 H 0.07 1.71 7.49 -51.93 -0.39 1.32 16 44 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.09 0.32 7.11 -51.93 -0.37 -0.05 16 46 H 0.11 0.92 6.24 -51.93 -0.32 0.60 16 LS Contribution 383.01 15.07 5.77 5.77 Total: -1.00 -33.66 383.01 -10.79 -44.45 By element: Atomic # 1 Polarization: 8.30 SS G_CDS: -6.30 Total: 2.00 kcal Atomic # 6 Polarization: 3.31 SS G_CDS: -4.45 Total: -1.15 kcal Atomic # 7 Polarization: -59.16 SS G_CDS: -0.86 Total: -60.02 kcal Atomic # 8 Polarization: -7.76 SS G_CDS: 0.08 Total: -7.68 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -33.66 -10.79 -44.45 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054278814.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.875 kcal (2) G-P(sol) polarization free energy of solvation -33.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.445 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds